MD00G1172500.v1.1

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
39574511 .. 39576858
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1172500.v1.1.491

Sequence Viewer

Length: 1296 bp
ATGAGCTTCCCTCCTTCTGCATCAGGCGCGATGAAAGCAGTTCGAGGAAAGCTACATTTTCCTGTTATCATGGTTTGCGCTATCGCCTTTATCAGTCTCCTCTACGCCGAACGAACTAGCATCATTCTTTCCTCCAACCCTTTTTTCAAAATTAAATCATGTTCCAAACCCGAAGCCATTACGAAAAATAAAAACAGAAATGCTACCGAGGATAAGTTAAGGGATTCCATATTAGATGATAGGTTTGCTTTCAACCCCGAGGAGTGCAGTGTTGAGAATGGAGAATGGGTGTTCAACCGTTCGATCAAGCCTCTTTACTCAGACAGAAGTTGCCCGTATCTTGATAGACAAGTTTCGTGTGTCAAGAATGGACGTCCGGATTCTGGCTATCGCTACTGGCAATGGCAGATTGAAGATTGTACATTGCCAAGATTTGATCCAGAAGTTACACTTAAGAAACTCAGAGGAAAGAGACTACTTTTTGTTGGGGATTCTTTGCAAAGAGGTCAATGGCAATCTTTAGTCTGTATGGTCGAATCCATCATACCCGAGAACCAAAAATCCATTCAACGAGGGCGGTCTCATACAGTCTTCAGAGCCAAGGAGTATAATGCTACTATTGAATTCTACTGGGCGCCATTTCTGGTTGAGTCCAATTCTGATGAACATATAATAGGAAATCCAAGGGAAAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCGAAATACTGGACAGGAGTTGATATCCTTGCGTTCAACACTTACGTTTGGTGGATGAGCGGCTACACGATCAAATCATACTGGGGATCGTTTCCAAATGGTGAAGAAGGGTATGAAGAATTGGATGCACCGGTTGCCTACAGAATGGCATTGAAGACATGGGCAAACTGGGTCGACTTAAATATCAATCCGAACAAGACTCGTGTTTTTTTCACTACTATGTCCCCTACACACATGAGAAGTGCAGACTGGGAAAATCCAGATGGGATGAAATGCTTCAACGAAACAAAGCCGTACATGAAAAAGGGATTCTGGGGAACAGGTTCGGACAAGAGGGTCATGCGCGTGGTGTCCGAAGTAATCCGCAAAATGAAAGTTCCGGTTTCAGTACTTAATGTAACGCAGATGTCAAATCACAGAGTTGATGCTCACACAAAAGTTTACACCGAAACCGGAGGCAACCTACTAACTGATGAACAAAAGGCTGATGTGCTGCACAATTCAGATTGTATACATTGGTGCCTTCCTGGAGTTCCAGACGCATGGAATCAAATTTTTATGGCACATTTGTAG

Protein Analysis

432

Amino Acids

49.69

Weight (kDa)

8.84

Isoelectric Point (pI)

38.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMR5N PF14416 87 - 140 1.8e-18 PMR5 N terminal Domain
PC-Esterase PF13839 142 - 429 7.8e-95 GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1058
AatII GACGTC 1 cut(s) 376
AccB1I GGYRCC 2 cut(s) 634, 1242
AccBSI CCGCTC 1 cut(s) 783
AccI GTMKAC 2 cut(s) 897, 1234
AccII CGCG 2 cut(s) 29, 1068
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 3 cut(s) 577, 783, 1087
AclWI GGATC 2 cut(s) 431, 817
AcsI RAATTY 2 cut(s) 623, 1275
AcuI CTGAAG 1 cut(s) 577
AcyI GRCGYC 2 cut(s) 373, 635
AfaI GTAC 3 cut(s) 421, 1019, 1113
AfiI CCNNNNNNNGG 1 cut(s) 383
AflII CTTAAG 1 cut(s) 452
AgeI ACCGGT 1 cut(s) 853
AgsI TTSAA 9 cut(s) 148, 253, 295, 413, 569, 623, 760, 877, 1003
AjnI CCWGG 1 cut(s) 1249
AjuI GAANNNNNNNTTGG 4 cut(s) 128, 160, 549, 581
AloI GAACNNNNNNTCC 2 cut(s) 545, 577
AluBI AGCT 2 cut(s) 6, 52
AluI AGCT 2 cut(s) 6, 52
Alw26I GTCTC 3 cut(s) 101, 466, 585
AlwI GGATC 2 cut(s) 431, 817
Ama87I CYCGRG 2 cut(s) 257, 548
Aor13HI TCCGGA 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 1216
ApoI RAATTY 2 cut(s) 623, 1275
AsiGI ACCGGT 1 cut(s) 853
Asp700I GAANNNNTTC 2 cut(s) 998, 1045
AspLEI GCGC 4 cut(s) 29, 80, 637, 1068
AsuHPI GGTGA 1 cut(s) 836
AvaI CYCGRG 2 cut(s) 257, 548
BanI GGYRCC 2 cut(s) 634, 1242
BauI CACGAG 1 cut(s) 924
BbsI GAAGAC 2 cut(s) 583, 884
BbvI GCAGC 1 cut(s) 1203
BccI CCATC 2 cut(s) 548, 980
BceAI ACGGC 1 cut(s) 1000
BciT130I CCWGG 1 cut(s) 1251
BcoDI GTCTC 3 cut(s) 101, 466, 585
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 1 cut(s) 862
BfoI RGCGCY 1 cut(s) 638
BfrI CTTAAG 1 cut(s) 452
BisI GCNGC 2 cut(s) 784, 1217
BlsI GCNGC 2 cut(s) 785, 1218
BmcAI AGTACT 1 cut(s) 1113
Bme1390I CCNGG 1 cut(s) 1251
BmeT110I CYCGRG 2 cut(s) 257, 548
BmiI GGNNCC 2 cut(s) 636, 1244
BmrFI CCNGG 1 cut(s) 1251
BmrI ACTGGG 4 cut(s) 640, 814, 901, 982
BmsI GCATC 4 cut(s) 29, 129, 838, 1138
BmuI ACTGGG 4 cut(s) 640, 814, 901, 982
BpiI GAAGAC 2 cut(s) 583, 884
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 1272
BsaHI GRCGYC 2 cut(s) 373, 635
BsaI GGTCTC 1 cut(s) 585
BsaJI CCNNGG 4 cut(s) 207, 258, 600, 683
BsaWI WCCGGW 4 cut(s) 376, 853, 1102, 1175
BsaXI ACNNNNNCTCC 2 cut(s) 273, 303
Bsc4I CCNNNNNNNGG 1 cut(s) 383
Bse118I RCCGGY 1 cut(s) 853
Bse1I ACTGG 6 cut(s) 401, 635, 737, 809, 896, 977
Bse3DI GCAATG 2 cut(s) 407, 422
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 1251
BseDI CCNNGG 4 cut(s) 207, 258, 600, 683
BseGI GGATG 3 cut(s) 783, 853, 996
BseLI CCNNNNNNNGG 1 cut(s) 383
BseMI GCAATG 2 cut(s) 407, 422
BseMII CTCAG 2 cut(s) 333, 475
BseNI ACTGG 6 cut(s) 401, 635, 737, 809, 896, 977
BseRI GAGGAG 2 cut(s) 89, 275
BseXI GCAGC 1 cut(s) 1203
BsgI GTGCAG 3 cut(s) 286, 987, 1202
Bsh1236I CGCG 2 cut(s) 29, 1068
BshNI GGYRCC 2 cut(s) 634, 1242
BshTI ACCGGT 1 cut(s) 853
BsiHKCI CYCGRG 2 cut(s) 257, 548
BsiSI CCGG 4 cut(s) 377, 854, 1103, 1176
BslFI GGGAC 1 cut(s) 931
BslI CCNNNNNNNGG 1 cut(s) 383
BsmAI GTCTC 3 cut(s) 101, 466, 585
BsmFI GGGAC 1 cut(s) 931
Bso31I GGTCTC 1 cut(s) 585
BsoBI CYCGRG 2 cut(s) 257, 548
Bsp13I TCCGGA 1 cut(s) 376
Bsp1407I TGTACA 1 cut(s) 419
Bsp143I GATC 4 cut(s) 303, 436, 792, 809
BspACI CCGC 3 cut(s) 577, 783, 1087
BspCNI CTCAG 2 cut(s) 332, 474
BspEI TCCGGA 1 cut(s) 376
BspFNI CGCG 2 cut(s) 29, 1068
BspLI GGNNCC 2 cut(s) 636, 1244
BspPI GGATC 2 cut(s) 431, 817
BspT107I GGYRCC 2 cut(s) 634, 1242
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 585
BsrBI CCGCTC 1 cut(s) 783
BsrDI GCAATG 2 cut(s) 407, 422
BsrFI RCCGGY 1 cut(s) 853
BsrGI TGTACA 1 cut(s) 419
BsrI ACTGG 6 cut(s) 401, 635, 737, 809, 896, 977
BssAI RCCGGY 1 cut(s) 853
BssECI CCNNGG 4 cut(s) 207, 258, 600, 683
BssMI GATC 4 cut(s) 303, 436, 792, 809
BssNAI GTATAC 1 cut(s) 1235
BssNI GRCGYC 2 cut(s) 373, 635
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 2 cut(s) 600, 683
Bst1107I GTATAC 1 cut(s) 1235
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 1 cut(s) 1251
Bst4CI ACNGT 2 cut(s) 299, 589
BstACI GRCGYC 2 cut(s) 373, 635
BstAFI CTTAAG 1 cut(s) 452
BstAPI GCANNNNNTGC 1 cut(s) 857
BstAUI TGTACA 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 2 cut(s) 319, 461
BstF5I GGATG 3 cut(s) 783, 853, 996
BstFNI CGCG 2 cut(s) 29, 1068
BstH2I RGCGCY 1 cut(s) 638
BstHHI GCGC 4 cut(s) 29, 80, 637, 1068
BstKTI GATC 4 cut(s) 306, 439, 795, 812
BstMAI GTCTC 3 cut(s) 101, 466, 585
BstMBI GATC 4 cut(s) 303, 436, 792, 809
BstMWI GCNNNNNNNGC 4 cut(s) 26, 35, 722, 857
BstNI CCWGG 1 cut(s) 1251
BstNSI RCATGY 1 cut(s) 725
BstSCI CCNGG 1 cut(s) 1249
BstSFI CTRYAG 1 cut(s) 862
BstUI CGCG 2 cut(s) 29, 1068
BstV1I GCAGC 1 cut(s) 1203
BstV2I GAAGAC 2 cut(s) 583, 884
BstXI CCANNNNNNTGG 1 cut(s) 1266
BstZ17I GTATAC 1 cut(s) 1235
BtgZI GCGATG 1 cut(s) 44
BtsCI GGATG 3 cut(s) 783, 853, 996
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 1 cut(s) 723
CfoI GCGC 4 cut(s) 29, 80, 637, 1068
Cfr10I RCCGGY 1 cut(s) 853
CseI GACGC 1 cut(s) 1271
Csp6I GTAC 3 cut(s) 420, 1018, 1112
CspAI ACCGGT 1 cut(s) 853
CviAII CATG 8 cut(s) 70, 159, 722, 882, 958, 1021, 1063, 1266
CviJI RGCY 9 cut(s) 6, 52, 176, 310, 387, 599, 786, 1015, 1208
CviKI_1 RGCY 9 cut(s) 6, 52, 176, 310, 387, 599, 786, 1015, 1208
CviQI GTAC 3 cut(s) 420, 1018, 1112
DdeI CTNAG 2 cut(s) 319, 461
DinI GGCGCC 1 cut(s) 636
DpnI GATC 4 cut(s) 305, 438, 794, 811
DpnII GATC 4 cut(s) 303, 436, 792, 809
DrdI GACNNNNNNGTC 1 cut(s) 1058
DseDI GACNNNNNNGTC 1 cut(s) 1058
Eco130I CCWWGG 2 cut(s) 600, 683
Eco31I GGTCTC 1 cut(s) 585
Eco32I GATATC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 577
Eco88I CYCGRG 2 cut(s) 257, 548
EcoRI GAATTC 1 cut(s) 623
EcoRII CCWGG 1 cut(s) 1249
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 2 cut(s) 600, 683
EgeI GGCGCC 1 cut(s) 636
EheI GGCGCC 1 cut(s) 636
ErhI CCWWGG 2 cut(s) 600, 683
FaeI CATG 8 cut(s) 73, 162, 725, 885, 961, 1024, 1066, 1269
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 931
FatI CATG 8 cut(s) 69, 158, 721, 881, 957, 1020, 1062, 1265
FblI GTMKAC 2 cut(s) 897, 1234
Fnu4HI GCNGC 2 cut(s) 784, 1217
FokI GGATG 3 cut(s) 790, 860, 1003
Fsp4HI GCNGC 2 cut(s) 784, 1217
FspBI CTAG 1 cut(s) 117
GlaI GCGC 4 cut(s) 28, 79, 636, 1067
GluI GCNGC 2 cut(s) 784, 1217
GsuI CTGGAG 1 cut(s) 1272
HaeII RGCGCY 1 cut(s) 638
HapII CCGG 4 cut(s) 377, 854, 1103, 1176
HgaI GACGC 1 cut(s) 1271
HhaI GCGC 4 cut(s) 29, 80, 637, 1068
Hin1I GRCGYC 2 cut(s) 373, 635
Hin1II CATG 8 cut(s) 73, 162, 725, 885, 961, 1024, 1066, 1269
Hin6I GCGC 4 cut(s) 27, 78, 635, 1066
HinP1I GCGC 4 cut(s) 27, 78, 635, 1066
HincII GTYRAC 1 cut(s) 898
HindII GTYRAC 1 cut(s) 898
HinfI GANTC 9 cut(s) 224, 380, 491, 536, 650, 707, 922, 1032, 1270
HpaII CCGG 4 cut(s) 377, 854, 1103, 1176
HphI GGTGA 1 cut(s) 836
Hpy166II GTNNAC 3 cut(s) 898, 1165, 1235
Hpy188I TCNGA 8 cut(s) 322, 464, 596, 661, 915, 1051, 1078, 1228
Hpy188III TCNNGA 6 cut(s) 341, 364, 377, 440, 983, 1259
Hpy8I GTNNAC 3 cut(s) 898, 1165, 1235
HpyAV CCTTC 3 cut(s) 24, 824, 1256
HpyCH4III ACNGT 2 cut(s) 299, 589
HpyCH4IV ACGT 2 cut(s) 373, 768
HpyCH4V TGCA 6 cut(s) 20, 267, 499, 851, 968, 1219
HpyF10VI GCNNNNNNNGC 4 cut(s) 26, 35, 722, 857
HpyF3I CTNAG 2 cut(s) 319, 461
HpySE526I ACGT 2 cut(s) 373, 768
Hsp92I GRCGYC 2 cut(s) 373, 635
Hsp92II CATG 8 cut(s) 73, 162, 725, 885, 961, 1024, 1066, 1269
HspAI GCGC 4 cut(s) 27, 78, 635, 1066
KasI GGCGCC 1 cut(s) 634
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 4 cut(s) 303, 436, 792, 809
Lsp1109I GCAGC 1 cut(s) 1203
LweI GCATC 4 cut(s) 29, 129, 838, 1138
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 373, 768
MaeIII GTNAC 2 cut(s) 445, 1120
MalI GATC 4 cut(s) 305, 438, 794, 811
MbiI CCGCTC 1 cut(s) 783
MboI GATC 4 cut(s) 303, 436, 792, 809
MboII GAAGA 5 cut(s) 425, 583, 839, 851, 889
MluCI AATT 6 cut(s) 150, 623, 655, 842, 1222, 1275
Mly113I GGCGCC 1 cut(s) 635
MlyI GAGTC 2 cut(s) 659, 916
MmeI TCCRAC 1 cut(s) 159
MroI TCCGGA 1 cut(s) 376
MroXI GAANNNNTTC 2 cut(s) 998, 1045
MseI TTAA 5 cut(s) 153, 218, 453, 902, 1116
MslI CAYNNNNRTG 2 cut(s) 941, 1067
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 4 cut(s) 377, 854, 1103, 1176
MspR9I CCNGG 1 cut(s) 1251
MvaI CCWGG 1 cut(s) 1251
MvnI CGCG 2 cut(s) 29, 1068
MwoI GCNNNNNNNGC 4 cut(s) 26, 35, 722, 857
NarI GGCGCC 1 cut(s) 635
NdeII GATC 4 cut(s) 303, 436, 792, 809
NlaIII CATG 8 cut(s) 73, 162, 725, 885, 961, 1024, 1066, 1269
NlaIV GGNNCC 2 cut(s) 636, 1244
NspI RCATGY 1 cut(s) 725
PaeI GCATGC 1 cut(s) 725
PdmI GAANNNNTTC 2 cut(s) 998, 1045
PfeI GAWTC 7 cut(s) 224, 380, 491, 536, 707, 1032, 1270
PfoI TCCNGGA 1 cut(s) 1249
PinAI ACCGGT 1 cut(s) 853
PkrI GCNGC 2 cut(s) 785, 1218
PleI GAGTC 2 cut(s) 658, 916
PluTI GGCGCC 1 cut(s) 638
PpsI GAGTC 2 cut(s) 658, 916
Psp6I CCWGG 1 cut(s) 1249
PspGI CCWGG 1 cut(s) 1249
PspN4I GGNNCC 2 cut(s) 636, 1244
RsaI GTAC 3 cut(s) 421, 1019, 1113
RsaNI GTAC 3 cut(s) 420, 1018, 1112
RseI CAYNNNNRTG 2 cut(s) 941, 1067
SalI GTCGAC 1 cut(s) 896
SaqAI TTAA 5 cut(s) 153, 218, 453, 902, 1116
SatI GCNGC 2 cut(s) 784, 1217
Sau3AI GATC 4 cut(s) 303, 436, 792, 809
ScaI AGTACT 1 cut(s) 1113
SchI GAGTC 2 cut(s) 659, 916
ScrFI CCNGG 1 cut(s) 1251
SetI ASST 8 cut(s) 8, 54, 245, 376, 508, 771, 1048, 1188
SfaNI GCATC 4 cut(s) 29, 129, 838, 1138
SfcI CTRYAG 1 cut(s) 862
SfoI GGCGCC 1 cut(s) 636
SmiMI CAYNNNNRTG 2 cut(s) 941, 1067
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SphI GCATGC 1 cut(s) 725
Sse9I AATT 6 cut(s) 150, 623, 655, 842, 1222, 1275
SsiI CCGC 3 cut(s) 577, 783, 1087
SspDI GGCGCC 1 cut(s) 634
SspMI CTAG 1 cut(s) 117
StyD4I CCNGG 1 cut(s) 1249
StyI CCWWGG 2 cut(s) 600, 683
TaaI ACNGT 2 cut(s) 299, 589
TaiI ACGT 2 cut(s) 376, 771
TaqI TCGA 4 cut(s) 43, 302, 534, 897
TasI AATT 6 cut(s) 150, 623, 655, 842, 1222, 1275
TatI WGTACW 2 cut(s) 419, 1111
TauI GCSGC 1 cut(s) 786
TfiI GAWTC 7 cut(s) 224, 380, 491, 536, 707, 1032, 1270
Tru1I TTAA 5 cut(s) 153, 218, 453, 902, 1116
Tru9I TTAA 5 cut(s) 153, 218, 453, 902, 1116
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 1216
TspDTI ATGAA 7 cut(s) 47, 678, 852, 1007, 1037, 1109, 1212
TspRI CASTG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 452
XapI RAATTY 2 cut(s) 623, 1275
XceI RCATGY 1 cut(s) 725
XmiI GTMKAC 2 cut(s) 897, 1234
XmnI GAANNNNTTC 2 cut(s) 998, 1045
XspI CTAG 1 cut(s) 117
ZraI GACGTC 1 cut(s) 374
ZrmI AGTACT 1 cut(s) 1113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.