pycom12g16280

Protein trichome birefringence-like 3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
18661853 .. 18663979
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16280.4

Sequence Viewer

Length: 1389 bp
ATGAGCTTCCCTCCATCGACTGCATCTGGCGCAATGAAAGTGTTTCGCGGAAAGCTACATTTTCCAATTATCATGGTCTGCGCTATCGCCTTCATCAGTCTCCTCTACACCGAACGGATTGGCATCATTCTTTCCTCCAACCCTTTTTTCAAAGTTAAATCATGTTCCAAAACCAATGCCACTTCGAAAAATAAAAATAGAAATGCTACACTGGATAAGTTGAGGGATACCATATTAGATGATAGGTTTGAGTTTGACCCTGAGGAGTGCAGCATTGAAAATGGAAAGTGGGTGTTCAACCGTTCGATCGAGCCTCTTTACTCGGATAGAAGTTGCCCGTATCTTGATAGGCAAGTTTCGTGTGTCAAGAATGGACGTCCGGATTCTGGCTATCGCTACTGGCAATGGCAGATCCAAGATTGCACATTGCCAAGGCATACGCAATCTTCATGGATTAATTTAAATACGTACTGCATGAAGTTCTGTTTTTCTAAACAGTTAATTTCTTACAACTTTGTATGTAGATTTGATCCAGAAGTTGTTCTTAAGAAACTTAGCGGAAAGAGGCTACTTTTTGTTGGGGATTCTTTGCAAAGAGGTCAATGGCAATCTCTAGTCTGTATGGTTGAATCCATCATACCAGAGGACCAAAAGTCCATAAGACGCGGGCACTCTCACACAGTCTTCAGTGCCAAGGAGTATAATGCAAGTATTGAATTCTACTGGGCTCCATTTCTCGTTGATTCCAATTCTGATGAACAGATAATCGGAAATCCGAAGGAAAGAATACTAAAAGTGGATTCAGTTGCCAAGCATGCCAAATACTGGACAGGAGTTGATATCCTTGTGTTCAACACTTACGTTTGGTGGATGAGCGGCTACACGATCAAATCATACTGGGGCTCGTTTCCAAACGGAGAAGAAGGGTACGAAGAATTGGAAGCACCGGCTGCCTACAGAATAGCATTGAAGACATGGGCTAACTGGGTCGACACAAATGTGAATCCGAACAAGACCCGTGTTTTTTTCACTACTATGTCCCCTACACACATGAGAAGCGCAGACTGGGAAAATCCAGATGGGATGAGATGCTTCAACGAAACAAAGCCATACATGAAAAAGGGATTCTGGGGAACTGGTTCGGACAAGAAGATCATGCGTGTGGTGTCCGAAGTAATAAACAAAATGAAATTTCCGGTTTCAGTACTCAATGTAACGCAGATGTCAAATTACAGAGTTGATGCTCACACAAAAGTTTACACCGAAACCGGAGGCCAAGTACTAACTGATGAGCAAAAGGCTGATGTGCTGCACAATTCAGATTGCATACATTGGTGCCTTCCTGGAGTTCCGGACACATGGAATCAAATTTTTGTGGCACATTTATAG

Protein Analysis

463

Amino Acids

53.38

Weight (kDa)

8.72

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014359)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01360 AT5G01360
fragaria_vesca FvH4_6g11230 FvH4_6g11230
malus_domestica MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica Prupe.6G279700_v2.0.a1
pyrus_communis pycom04g14210 pycom12g16280
rosa_chinensis RchiOBHm_Chr3g0462741
rosa_laevigata RLG00000024836
rosa_multiflora Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii Rroxscaffold_6G00417240
rosa_rugosa Rorug03G0058900
rosa_samantha Rh3DG122300
rosa_wichuraiana Rw3G009900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 1335
AccB7I CCANNNNNTGG 1 cut(s) 825
AccBSI CCGCTC 1 cut(s) 876
AccI GTMKAC 1 cut(s) 990
AccII CGCG 2 cut(s) 48, 666
AccIII TCCGGA 2 cut(s) 379, 1351
AciI CCGC 4 cut(s) 48, 558, 666, 876
AclWI GGATC 2 cut(s) 406, 524
AcsI RAATTY 3 cut(s) 716, 1190, 1368
AcuI CTGAAG 1 cut(s) 670
AcyI GRCGYC 1 cut(s) 376
AfaI GTAC 4 cut(s) 470, 929, 1206, 1281
AfiI CCNNNNNNNGG 2 cut(s) 386, 825
AflII CTTAAG 1 cut(s) 545
AgsI TTSAA 8 cut(s) 151, 278, 298, 629, 716, 853, 970, 1096
AhdI GACNNNNNGTC 1 cut(s) 652
AjnI CCWGG 1 cut(s) 1342
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AleI CACNNNNGTG 1 cut(s) 998
AluBI AGCT 2 cut(s) 6, 55
AluI AGCT 2 cut(s) 6, 55
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 2 cut(s) 406, 524
Aor13HI TCCGGA 2 cut(s) 379, 1351
AoxI GGCC 1 cut(s) 1273
ApeKI GCWGC 3 cut(s) 270, 950, 1309
ApoI RAATTY 3 cut(s) 716, 1190, 1368
AseI ATTAAT 1 cut(s) 456
Asp700I GAANNNNTTC 2 cut(s) 540, 1138
AspLEI GCGC 3 cut(s) 32, 83, 1061
AspS9I GGNCC 1 cut(s) 646
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 646
AxyI CCTNAGG 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 1 cut(s) 1335
BanII GRGCYC 2 cut(s) 730, 905
BbsI GAAGAC 2 cut(s) 676, 977
BbvI GCAGC 3 cut(s) 282, 937, 1296
BccI CCATC 3 cut(s) 22, 641, 1073
BciT130I CCWGG 1 cut(s) 1344
BciVI GTATCC 1 cut(s) 220
BcoDI GTCTC 1 cut(s) 104
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 955
BfrI CTTAAG 1 cut(s) 545
BfuI GTATCC 1 cut(s) 220
BisI GCNGC 4 cut(s) 271, 877, 951, 1310
BlsI GCNGC 4 cut(s) 272, 878, 952, 1311
BmcAI AGTACT 2 cut(s) 1206, 1281
Bme1390I CCNGG 1 cut(s) 1344
Bme18I GGWCC 1 cut(s) 646
BmeRI GACNNNNNGTC 1 cut(s) 652
BmgT120I GGNCC 1 cut(s) 646
BmiI GGNNCC 2 cut(s) 729, 1337
BmrFI CCNGG 1 cut(s) 1344
BmrI ACTGGG 4 cut(s) 733, 907, 994, 1075
BmsI GCATC 4 cut(s) 32, 132, 1079, 1231
BmuI ACTGGG 4 cut(s) 733, 907, 994, 1075
BpiI GAAGAC 2 cut(s) 676, 977
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 1365
Bpu14I TTCGAA 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 468
BsaBI GATNNNNATC 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 376
BsaJI CCNNGG 2 cut(s) 431, 693
BsaWI WCCGGW 4 cut(s) 379, 1195, 1268, 1351
BsaXI ACNNNNNCTCC 2 cut(s) 1263, 1293
Bsc4I CCNNNNNNNGG 2 cut(s) 386, 825
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 8 cut(s) 216, 404, 728, 830, 902, 989, 1070, 1141
Bse21I CCTNAGG 1 cut(s) 261
Bse3DI GCAATG 3 cut(s) 39, 410, 425
Bse8I GATNNNNATC 1 cut(s) 122
BseAI TCCGGA 2 cut(s) 379, 1351
BseBI CCWGG 1 cut(s) 1344
BseDI CCNNGG 2 cut(s) 431, 693
BseGI GGATG 2 cut(s) 876, 1089
BseJI GATNNNNATC 1 cut(s) 122
BseLI CCNNNNNNNGG 2 cut(s) 386, 825
BseMI GCAATG 3 cut(s) 39, 410, 425
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 8 cut(s) 216, 404, 728, 830, 902, 989, 1070, 1141
BseRI GAGGAG 2 cut(s) 92, 278
BseSI GKGCMC 1 cut(s) 672
BseXI GCAGC 3 cut(s) 282, 937, 1296
BsgI GTGCAG 2 cut(s) 289, 1295
Bsh1236I CGCG 2 cut(s) 48, 666
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 1 cut(s) 1275
BshNI GGYRCC 1 cut(s) 1335
BsiEI CGRYCG 1 cut(s) 309
BsiSI CCGG 5 cut(s) 380, 947, 1196, 1269, 1352
BslFI GGGAC 1 cut(s) 1024
BslI CCNNNNNNNGG 2 cut(s) 386, 825
BsmAI GTCTC 1 cut(s) 104
BsmFI GGGAC 1 cut(s) 1024
BsnI GGCC 1 cut(s) 1275
Bsp119I TTCGAA 1 cut(s) 185
Bsp1286I GDGCHC 3 cut(s) 672, 730, 905
Bsp13I TCCGGA 2 cut(s) 379, 1351
Bsp143I GATC 5 cut(s) 306, 411, 529, 885, 1152
BspACI CCGC 4 cut(s) 48, 558, 666, 876
BspANI GGCC 1 cut(s) 1275
BspCNI CTCAG 1 cut(s) 253
BspEI TCCGGA 2 cut(s) 379, 1351
BspFNI CGCG 2 cut(s) 48, 666
BspLI GGNNCC 2 cut(s) 729, 1337
BspPI GGATC 2 cut(s) 406, 524
BspT104I TTCGAA 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 1335
BspTI CTTAAG 1 cut(s) 545
BsrBI CCGCTC 1 cut(s) 876
BsrDI GCAATG 3 cut(s) 39, 410, 425
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 8 cut(s) 216, 404, 728, 830, 902, 989, 1070, 1141
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 431, 693
BssMI GATC 5 cut(s) 306, 411, 529, 885, 1152
BssNI GRCGYC 1 cut(s) 376
BssT1I CCWWGG 2 cut(s) 431, 693
Bst2UI CCWGG 1 cut(s) 1344
Bst4CI ACNGT 3 cut(s) 302, 498, 682
BstACI GRCGYC 1 cut(s) 376
BstAFI CTTAAG 1 cut(s) 545
BstAPI GCANNNNNTGC 1 cut(s) 950
BstBAI YACGTR 1 cut(s) 468
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 2 cut(s) 668, 816
BstDEI CTNAG 2 cut(s) 261, 554
BstF5I GGATG 2 cut(s) 876, 1089
BstFNI CGCG 2 cut(s) 48, 666
BstHHI GCGC 3 cut(s) 32, 83, 1061
BstKTI GATC 5 cut(s) 309, 414, 532, 888, 1155
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 5 cut(s) 306, 411, 529, 885, 1152
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 29, 815, 950
BstNI CCWGG 1 cut(s) 1344
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 1342
BstSFI CTRYAG 1 cut(s) 955
BstSLI GKGCMC 1 cut(s) 672
BstSNI TACGTA 1 cut(s) 468
BstUI CGCG 2 cut(s) 48, 666
BstV1I GCAGC 3 cut(s) 282, 937, 1296
BstV2I GAAGAC 2 cut(s) 676, 977
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
Bsu36I CCTNAGG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 1 cut(s) 1275
BtsCI GGATG 2 cut(s) 876, 1089
BtsIMutI CAGTG 2 cut(s) 209, 694
Cac8I GCNNGC 2 cut(s) 668, 816
CfoI GCGC 3 cut(s) 32, 83, 1061
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 1 cut(s) 646
CseI GACGC 1 cut(s) 672
Csp6I GTAC 4 cut(s) 469, 928, 1205, 1280
CviQI GTAC 4 cut(s) 469, 928, 1205, 1280
DdeI CTNAG 2 cut(s) 261, 554
DpnI GATC 5 cut(s) 308, 413, 531, 887, 1154
DpnII GATC 5 cut(s) 306, 411, 529, 885, 1152
DraI TTTAAA 1 cut(s) 462
DriI GACNNNNNGTC 1 cut(s) 652
Eam1105I GACNNNNNGTC 1 cut(s) 652
Eco105I TACGTA 1 cut(s) 468
Eco130I CCWWGG 2 cut(s) 431, 693
Eco24I GRGCYC 2 cut(s) 730, 905
Eco32I GATATC 1 cut(s) 841
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 670
Eco81I CCTNAGG 1 cut(s) 261
EcoRI GAATTC 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 1342
EcoRV GATATC 1 cut(s) 841
EcoT14I CCWWGG 2 cut(s) 431, 693
EcoT38I GRGCYC 2 cut(s) 730, 905
ErhI CCWWGG 2 cut(s) 431, 693
FalI AAGNNNNNCTT 2 cut(s) 528, 560
FaqI GGGAC 1 cut(s) 1024
FauI CCCGC 1 cut(s) 659
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 4 cut(s) 271, 877, 951, 1310
FokI GGATG 2 cut(s) 883, 1096
FriOI GRGCYC 2 cut(s) 730, 905
Fsp4HI GCNGC 4 cut(s) 271, 877, 951, 1310
FspBI CTAG 1 cut(s) 614
GlaI GCGC 3 cut(s) 31, 82, 1060
GluI GCNGC 4 cut(s) 271, 877, 951, 1310
GsuI CTGGAG 1 cut(s) 1365
HaeIII GGCC 1 cut(s) 1275
HapII CCGG 5 cut(s) 380, 947, 1196, 1269, 1352
HgaI GACGC 1 cut(s) 672
HhaI GCGC 3 cut(s) 32, 83, 1061
Hin1I GRCGYC 1 cut(s) 376
Hin6I GCGC 3 cut(s) 30, 81, 1059
HinP1I GCGC 3 cut(s) 30, 81, 1059
HincII GTYRAC 1 cut(s) 991
HindII GTYRAC 1 cut(s) 991
HinfI GANTC 8 cut(s) 383, 584, 629, 743, 800, 1003, 1125, 1363
HpaII CCGG 5 cut(s) 380, 947, 1196, 1269, 1352
Hpy166II GTNNAC 2 cut(s) 991, 1258
Hpy188I TCNGA 8 cut(s) 325, 754, 770, 777, 1008, 1144, 1171, 1321
Hpy188III TCNNGA 6 cut(s) 344, 367, 380, 533, 1076, 1352
Hpy8I GTNNAC 2 cut(s) 991, 1258
HpyAV CCTTC 4 cut(s) 100, 772, 917, 1349
HpyCH4III ACNGT 3 cut(s) 302, 498, 682
HpyCH4IV ACGT 3 cut(s) 376, 467, 861
HpyCH4V TGCA 8 cut(s) 23, 270, 423, 474, 592, 707, 1312, 1326
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 815, 950
HpyF3I CTNAG 2 cut(s) 261, 554
HpySE526I ACGT 3 cut(s) 376, 467, 861
Hsp92I GRCGYC 1 cut(s) 376
HspAI GCGC 3 cut(s) 30, 81, 1059
Kpn2I TCCGGA 2 cut(s) 379, 1351
Kzo9I GATC 5 cut(s) 306, 411, 529, 885, 1152
LmnI GCTCC 1 cut(s) 733
Lsp1109I GCAGC 3 cut(s) 282, 937, 1296
LweI GCATC 4 cut(s) 32, 132, 1079, 1231
MaeI CTAG 1 cut(s) 614
MaeII ACGT 3 cut(s) 376, 467, 861
MaeIII GTNAC 1 cut(s) 1213
MalI GATC 5 cut(s) 308, 413, 531, 887, 1154
MbiI CCGCTC 1 cut(s) 876
MboI GATC 5 cut(s) 306, 411, 529, 885, 1152
MboII GAAGA 6 cut(s) 438, 676, 932, 944, 982, 1162
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 672, 730, 905
MmeI TCCRAC 1 cut(s) 162
MroI TCCGGA 2 cut(s) 379, 1351
MroXI GAANNNNTTC 2 cut(s) 540, 1138
MseI TTAA 5 cut(s) 156, 456, 461, 500, 546
MslI CAYNNNNRTG 3 cut(s) 998, 1034, 1160
MspCI CTTAAG 1 cut(s) 545
MspI CCGG 5 cut(s) 380, 947, 1196, 1269, 1352
MspR9I CCNGG 1 cut(s) 1344
MvaI CCWGG 1 cut(s) 1344
MvnI CGCG 2 cut(s) 48, 666
MwoI GCNNNNNNNGC 3 cut(s) 29, 815, 950
NdeII GATC 5 cut(s) 306, 411, 529, 885, 1152
NlaIV GGNNCC 2 cut(s) 729, 1337
NspI RCATGY 1 cut(s) 818
NspV TTCGAA 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 998
PaeI GCATGC 1 cut(s) 818
PdmI GAANNNNTTC 2 cut(s) 540, 1138
PfeI GAWTC 8 cut(s) 383, 584, 629, 743, 800, 1003, 1125, 1363
PflMI CCANNNNNTGG 1 cut(s) 825
PfoI TCCNGGA 1 cut(s) 1342
PkrI GCNGC 4 cut(s) 272, 878, 952, 1311
Ple19I CGATCG 1 cut(s) 309
Ppu21I YACGTR 1 cut(s) 468
PshBI ATTAAT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 1342
PspN4I GGNNCC 2 cut(s) 729, 1337
PspPI GGNCC 1 cut(s) 646
PsuI RGATCY 1 cut(s) 411
PvuI CGATCG 1 cut(s) 309
RsaI GTAC 4 cut(s) 470, 929, 1206, 1281
RsaNI GTAC 4 cut(s) 469, 928, 1205, 1280
RseI CAYNNNNRTG 3 cut(s) 998, 1034, 1160
SalI GTCGAC 1 cut(s) 989
SaqAI TTAA 5 cut(s) 156, 456, 461, 500, 546
SatI GCNGC 4 cut(s) 271, 877, 951, 1310
Sau3AI GATC 5 cut(s) 306, 411, 529, 885, 1152
Sau96I GGNCC 1 cut(s) 646
ScaI AGTACT 2 cut(s) 1206, 1281
ScrFI CCNGG 1 cut(s) 1344
SduI GDGCHC 3 cut(s) 672, 730, 905
SetI ASST 7 cut(s) 8, 57, 248, 379, 470, 601, 864
SfaNI GCATC 4 cut(s) 32, 132, 1079, 1231
SfcI CTRYAG 1 cut(s) 955
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 646
SmiI ATTTAAAT 1 cut(s) 462
SmiMI CAYNNNNRTG 3 cut(s) 998, 1034, 1160
SmlI CTYRAG 1 cut(s) 545
SmoI CTYRAG 1 cut(s) 545
SnaBI TACGTA 1 cut(s) 468
SphI GCATGC 1 cut(s) 818
SsiI CCGC 4 cut(s) 48, 558, 666, 876
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 1 cut(s) 1342
StyI CCWWGG 2 cut(s) 431, 693
SwaI ATTTAAAT 1 cut(s) 462
TaaI ACNGT 3 cut(s) 302, 498, 682
TaiI ACGT 3 cut(s) 379, 470, 864
TaqI TCGA 5 cut(s) 17, 185, 305, 309, 990
TatI WGTACW 2 cut(s) 1204, 1279
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 8 cut(s) 383, 584, 629, 743, 800, 1003, 1125, 1363
Tru1I TTAA 5 cut(s) 156, 456, 461, 500, 546
Tru9I TTAA 5 cut(s) 156, 456, 461, 500, 546
TscAI CASTG 2 cut(s) 216, 694
TseI GCWGC 3 cut(s) 270, 950, 1309
TspDTI ATGAA 7 cut(s) 50, 82, 438, 491, 771, 1130, 1202
TspGWI ACGGA 2 cut(s) 130, 930
TspRI CASTG 2 cut(s) 216, 694
Van91I CCANNNNNTGG 1 cut(s) 825
Vha464I CTTAAG 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 646
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 3 cut(s) 716, 1190, 1368
XceI RCATGY 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 990
XmnI GAANNNNTTC 2 cut(s) 540, 1138
XspI CTAG 1 cut(s) 614
ZraI GACGTC 1 cut(s) 377
ZrmI AGTACT 2 cut(s) 1206, 1281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.