Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0014359

Physical Location & Seq

Genomic Coordinates Reverse (-)

4411432 .. 4413132

Gene Structure 1701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0058900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGTGGAACTCTCTGCTCTCCATGTACTGGAAATGTGGTCAAGAAAGGGATGCAGTTAAGGTGTTCGAGGAAATGCCTGTGAGAGATACGGTTTCGTGGAATACTATGATATCAGGGTTTTTGAGAAATGGGGAGTGTGAGATTGGTTCTGGGTACTTCAAGCGAATGCGGGAGTCGGGTTTTTATCGATTTGAGAAAGCTACTTTGACTTGCATTATAGCGGGTTTTGATGGGGTGGAGTGTTGTTACCTGAACAAGATGATGCATGGTTTGGTGGTTTTGAATGGGTTTGAGAGGGAAACTGAAGTGGGGAATGCTTTGATAACATCGTATTGTAAATGTGGGTGTTTTGGCTCAGCAAGACGGGTTTTCGATGAGATGTTTGAGAGGAATGTGATTACATGGACAGCGATGATTTCGGGCCTTGCACAGAATGGTTTCTATGTTGAGAGCTTGAAGGTGTTTGCGGAGATGCGGAGTGGTGTGGTGGAACCGAATGCTATGACGTTTTTGGGCTCACTCATGGCGTGTTCTGGATTGCAGGCGATAAGGGCGGGGCGTCAAATTCATGGACTTGTATGGAAATTGGGAGTTCAATCAGACCTGTGCATTGAGAGTTCATTGATGGACATGTACTCAAAATGTGGTAGTGTGGAAGATGCATGGAGAATTTTTGAGTCCACCGAAGAACTTGATGAGGTTTCCATGACTGTTATCCTTGTGGGATTTGCACAAAATGGGTTTGAGACTGATGCTATCCAGATTTTTGTGAAAATGATGAAGGCAGGGATTGAAATTGACCCAGACATGGTTTCAGCAGTTCTTGGGGTATTTGGTGTTGATACTTCTTTAGGCCTGGGAAAGCAACTCCACTCTTTAATTGTCAAAAAGAATTTTGGTTATAACTCTTTTGTTACAAATGGGCTTATAAATATGTATTCCAAGTGTGGAGAGCTGGAGGATTCGGCTAAAGTGTTCACTCGAATGCCTCAAAGGAACTCGGTTTCATGGAATTCAATGATTGCAGCTTTTGCCCGTCACGGAGATGGCTCCAAAGCATTACAATTGTATGAAAAGATGCAAATGGAAGGCGTACAACCAACAGACATTACATTTCTGTCTCTACTTCATGCTTGTAGCCATGTTGGGTTGATCGAAAGGGGCATGGAGTTTCTGAACTCTATGAAAGAAGAACATGGGATGAGTCCGAGGCCAGAACACTATGCCTGTATTGTTGACATGTTAGGTCGGGCAGGACTTCTAACTGAGGCTAAAAATTTCATTAAAGAACTGCCTGAGAATCCTGGTGTACTTGTTTGGCAAGCATTGCTTGGTGCTTGTAGCATTCATGGTAATTCTGACATCGGTAAATATGCTGCAGATCAGTTGGTTTTGGCAGCACCGCAGAGTCCCGCACCATATGTTTTGCTTGCCAATATATATTCTTCTGAAGGAAGGTGGAAAGACAGAGCAAAGACTATTAAGGGGATGAAGGAGATGGGGGTGGCAAAAGAAACGGGTATTAGTTGGATTGAAATTGAAAAGAAAGTTCAGAGCTTTGTTGTTGGTGATAAAATGCATCCACAAGCAGAGATCATTTATAGGGTTTTGGCAGAATTGCTTAGACTTATGAAAGATGAAGGATATGTACCGGATGAGAGGTTTTTACTTTATTACTTAGATCAAGATGAAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009059 GO:0009250 GO:0009664 GO:0009827 GO:0009987 GO:0010383 GO:0010393 GO:0010410 GO:0012505 GO:0016020 GO:0016043 GO:0016051 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042545 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045488 GO:0045489 GO:0045491 GO:0045492 GO:0051273 GO:0051274 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1990538

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

566

Amino Acids

63.4

Weight (kDa)

5.51

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	31 - 61	6.9e-07	PPR repeat
PPR_2	PF13041	130 - 170	5.8e-07	PPR repeat family
PPR	PF01535	133 - 160	1.3e-06	PPR repeat
PPR_2	PF13041	332 - 380	4.3e-13	PPR repeat family
PPR	PF01535	335 - 365	1.4e-08	PPR repeat
E_motif	PF20431	450 - 512	2.1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01360 AT5G01360
fragaria_vesca	FvH4_6g11230 FvH4_6g11230
malus_domestica	MD00G1172500.v1.1 MD12G1171500.v1.1
prunus_persica	Prupe.6G279700_v2.0.a1
pyrus_communis	pycom04g14210 pycom12g16280
rosa_chinensis	RchiOBHm_Chr3g0462741
rosa_laevigata	RLG00000024836
rosa_multiflora	Rmu_sc0000766.1_g000003 Rmu_sc0011057.1_g000007
rosa_roxburghii	Rroxscaffold_6G00417240
rosa_rugosa	Rorug03G0058900
rosa_samantha	Rh3DG122300
rosa_wichuraiana	Rw3G009900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	903, 929
AccB7I	CCANNNNNTGG	1 cut(s)	27
AciI	CCGC	7 cut(s)	169, 221, 467, 475, 554, 1403, 1413
AcsI	RAATTY	5 cut(s)	564, 669, 892, 1012, 1276
AcuI	CTGAAG	2 cut(s)	324, 1470
AcyI	GRCGYC	1 cut(s)	559
AfaI	GTAC	6 cut(s)	26, 155, 635, 1095, 1311, 1650
AfiI	CCNNNNNNNGG	2 cut(s)	27, 808
AflIII	ACRYGT	2 cut(s)	630, 1239
AgsI	TTSAA	8 cut(s)	160, 283, 457, 596, 794, 1017, 1535, 1541
AjnI	CCWGG	2 cut(s)	855, 1303
AluBI	AGCT	5 cut(s)	200, 453, 955, 1028, 1557
AluI	AGCT	5 cut(s)	200, 453, 955, 1028, 1557
Alw26I	GTCTC	2 cut(s)	740, 1125
AoxI	GGCC	3 cut(s)	421, 853, 1211
ApeKI	GCWGC	3 cut(s)	1025, 1376, 1397
ApoI	RAATTY	5 cut(s)	564, 669, 892, 1012, 1276
Asp700I	GAANNNNTTC	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	1580
BanII	GRGCYC	1 cut(s)	518
BarI	GAAGNNNNNNTAC	2 cut(s)	1632, 1664
BbvI	GCAGC	3 cut(s)	1037, 1363, 1409
BccI	CCATC	4 cut(s)	224, 619, 1040, 1492
BciT130I	CCWGG	2 cut(s)	857, 1305
BcoDI	GTCTC	2 cut(s)	740, 1125
BfmI	CTRYAG	1 cut(s)	1377
BisI	GCNGC	3 cut(s)	1026, 1377, 1398
BlpI	GCTNAGC	1 cut(s)	355
BlsI	GCNGC	3 cut(s)	1027, 1378, 1399
Bme1390I	CCNGG	2 cut(s)	857, 1305
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	2 cut(s)	492, 1051
BmrFI	CCNGG	2 cut(s)	857, 1305
BmsI	GCATC	7 cut(s)	40, 252, 462, 649, 742, 1068, 1588
BpmI	CTGGAG	1 cut(s)	977
Bpu1102I	GCTNAGC	1 cut(s)	355
Bsa29I	ATCGAT	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	559
BsaJI	CCNNGG	2 cut(s)	856, 1208
BsaWI	WCCGGW	1 cut(s)	1651
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 808
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	1325
BseBI	CCWGG	2 cut(s)	857, 1305
BseCI	ATCGAT	1 cut(s)	187
BseDI	CCNNGG	2 cut(s)	856, 1208
BseGI	GGATG	5 cut(s)	55, 1206, 1494, 1579, 1660
BseLI	CCNNNNNNNGG	2 cut(s)	27, 808
BseMI	GCAATG	1 cut(s)	1325
BseMII	CTCAG	3 cut(s)	369, 1257, 1287
BseNI	ACTGG	1 cut(s)	32
BseXI	GCAGC	3 cut(s)	1037, 1363, 1409
BshFI	GGCC	3 cut(s)	423, 855, 1213
BshVI	ATCGAT	1 cut(s)	187
BsiSI	CCGG	1 cut(s)	1652
BslFI	GGGAC	1 cut(s)	1395
BslI	CCNNNNNNNGG	2 cut(s)	27, 808
BsmAI	GTCTC	2 cut(s)	740, 1125
BsmFI	GGGAC	1 cut(s)	1395
BsmI	GAATGC	5 cut(s)	171, 319, 502, 990, 1344
BsnI	GGCC	3 cut(s)	423, 855, 1213
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp143I	GATC	4 cut(s)	1152, 1381, 1593, 1681
Bsp1720I	GCTNAGC	1 cut(s)	355
BspACI	CCGC	7 cut(s)	169, 221, 467, 475, 554, 1403, 1413
BspANI	GGCC	3 cut(s)	423, 855, 1213
BspCNI	CTCAG	3 cut(s)	368, 1258, 1288
BspDI	ATCGAT	1 cut(s)	187
BspLI	GGNNCC	2 cut(s)	492, 1051
BspMAI	CTGCAG	1 cut(s)	1381
BsrDI	GCAATG	1 cut(s)	1325
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	856, 1208
BssMI	GATC	4 cut(s)	1152, 1381, 1593, 1681
BssNI	GRCGYC	1 cut(s)	559
Bst2UI	CCWGG	2 cut(s)	857, 1305
Bst4CI	ACNGT	2 cut(s)	91, 712
BstACI	GRCGYC	1 cut(s)	559
BstAPI	GCANNNNNTGC	2 cut(s)	1031, 1327
BstC8I	GCNNGC	3 cut(s)	543, 1323, 1431
BstDEI	CTNAG	5 cut(s)	355, 1266, 1296, 1622, 1678
BstF5I	GGATG	5 cut(s)	55, 1206, 1494, 1579, 1660
BstKTI	GATC	4 cut(s)	1155, 1384, 1596, 1684
BstMAI	GTCTC	2 cut(s)	740, 1125
BstMBI	GATC	4 cut(s)	1152, 1381, 1593, 1681
BstMWI	GCNNNNNNNGC	3 cut(s)	551, 1031, 1327
BstNI	CCWGG	2 cut(s)	857, 1305
BstNSI	RCATGY	2 cut(s)	634, 1243
BstSCI	CCNGG	2 cut(s)	855, 1303
BstSFI	CTRYAG	1 cut(s)	1377
BstV1I	GCAGC	3 cut(s)	1037, 1363, 1409
Bsu15I	ATCGAT	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	423, 855, 1213
BsuTUI	ATCGAT	1 cut(s)	187
BtgZI	GCGATG	1 cut(s)	425
BtsCI	GGATG	5 cut(s)	55, 1206, 1494, 1579, 1660
Cac8I	GCNNGC	3 cut(s)	543, 1323, 1431
Cfr13I	GGNCC	1 cut(s)	421
ClaI	ATCGAT	1 cut(s)	187
CseI	GACGC	1 cut(s)	548
Csp6I	GTAC	6 cut(s)	25, 154, 634, 1094, 1310, 1649
CviQI	GTAC	6 cut(s)	25, 154, 634, 1094, 1310, 1649
DdeI	CTNAG	5 cut(s)	355, 1266, 1296, 1622, 1678
DpnI	GATC	4 cut(s)	1154, 1383, 1595, 1683
DpnII	GATC	4 cut(s)	1152, 1381, 1593, 1681
Eco147I	AGGCCT	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	518
Eco32I	GATATC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	324, 1470
EcoRI	GAATTC	1 cut(s)	1012
EcoRII	CCWGG	2 cut(s)	855, 1303
EcoRV	GATATC	1 cut(s)	111
EcoT22I	ATGCAT	3 cut(s)	267, 664, 1581
EcoT38I	GRGCYC	1 cut(s)	518
FalI	AAGNNNNNCTT	2 cut(s)	1314, 1346
FaqI	GGGAC	1 cut(s)	1395
FauI	CCCGC	4 cut(s)	162, 214, 547, 1420
FauNDI	CATATG	1 cut(s)	1420
Fnu4HI	GCNGC	3 cut(s)	1026, 1377, 1398
FokI	GGATG	5 cut(s)	62, 1213, 1501, 1566, 1667
FriOI	GRGCYC	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	1026, 1377, 1398
GluI	GCNGC	3 cut(s)	1026, 1377, 1398
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	3 cut(s)	423, 855, 1213
HapII	CCGG	1 cut(s)	1652
HgaI	GACGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	559
HincII	GTYRAC	1 cut(s)	1237
HindII	GTYRAC	1 cut(s)	1237
HinfI	GANTC	6 cut(s)	173, 677, 962, 1204, 1300, 1408
HpaII	CCGG	1 cut(s)	1652
HphI	GGTGA	1 cut(s)	1580
Hpy166II	GTNNAC	4 cut(s)	681, 978, 1237, 1310
Hpy188I	TCNGA	6 cut(s)	601, 1176, 1209, 1360, 1450, 1554
Hpy188III	TCNNGA	4 cut(s)	41, 534, 760, 1685
Hpy8I	GTNNAC	4 cut(s)	681, 978, 1237, 1310
HpyAV	CCTTC	7 cut(s)	451, 775, 1082, 1445, 1449, 1486, 1634
HpyCH4III	ACNGT	2 cut(s)	91, 712
HpyCH4IV	ACGT	1 cut(s)	506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	551, 1031, 1327
HpyF3I	CTNAG	5 cut(s)	355, 1266, 1296, 1622, 1678
HpySE526I	ACGT	1 cut(s)	506
Hsp92I	GRCGYC	1 cut(s)	559
Kzo9I	GATC	4 cut(s)	1152, 1381, 1593, 1681
LmnI	GCTCC	1 cut(s)	1055
Lsp1109I	GCAGC	3 cut(s)	1037, 1363, 1409
LweI	GCATC	7 cut(s)	40, 252, 462, 649, 742, 1068, 1588
MaeII	ACGT	1 cut(s)	506
MaeIII	GTNAC	3 cut(s)	245, 913, 1037
MalI	GATC	4 cut(s)	1154, 1383, 1595, 1683
MboI	GATC	4 cut(s)	1152, 1381, 1593, 1681
MboII	GAAGA	4 cut(s)	668, 698, 1202, 1437
MfeI	CAATTG	1 cut(s)	1064
MhlI	GDGCHC	1 cut(s)	518
MlyI	GAGTC	4 cut(s)	182, 686, 1213, 1417
MmeI	TCCRAC	1 cut(s)	1508
MnlI	CCTC	9 cut(s)	61, 288, 381, 691, 952, 999, 1203, 1261, 1653
Mph1103I	ATGCAT	3 cut(s)	267, 664, 1581
MroXI	GAANNNNTTC	1 cut(s)	437
MseI	TTAA	4 cut(s)	57, 878, 1284, 1482
MslI	CAYNNNNRTG	2 cut(s)	983, 1044
MspI	CCGG	1 cut(s)	1652
MspR9I	CCNGG	2 cut(s)	857, 1305
MunI	CAATTG	1 cut(s)	1064
Mva1269I	GAATGC	5 cut(s)	171, 319, 502, 990, 1344
MvaI	CCWGG	2 cut(s)	857, 1305
MwoI	GCNNNNNNNGC	3 cut(s)	551, 1031, 1327
NdeI	CATATG	1 cut(s)	1420
NdeII	GATC	4 cut(s)	1152, 1381, 1593, 1681
NlaIV	GGNNCC	2 cut(s)	492, 1051
NmuCI	GTSAC	1 cut(s)	1037
NsiI	ATGCAT	3 cut(s)	267, 664, 1581
NspI	RCATGY	2 cut(s)	634, 1243
PceI	AGGCCT	1 cut(s)	855
PciI	ACATGT	2 cut(s)	630, 1239
PctI	GAATGC	5 cut(s)	171, 319, 502, 990, 1344
PdmI	GAANNNNTTC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	962, 1300
PflMI	CCANNNNNTGG	1 cut(s)	27
PkrI	GCNGC	3 cut(s)	1027, 1378, 1399
PleI	GAGTC	4 cut(s)	181, 685, 1212, 1416
PpsI	GAGTC	4 cut(s)	181, 685, 1212, 1416
PscI	ACATGT	2 cut(s)	630, 1239
PsiI	TTATAA	2 cut(s)	903, 929
Psp6I	CCWGG	2 cut(s)	855, 1303
PspGI	CCWGG	2 cut(s)	855, 1303
PspN4I	GGNNCC	2 cut(s)	492, 1051
PspPI	GGNCC	1 cut(s)	421
PstI	CTGCAG	1 cut(s)	1381
RsaI	GTAC	6 cut(s)	26, 155, 635, 1095, 1311, 1650
RsaNI	GTAC	6 cut(s)	25, 154, 634, 1094, 1310, 1649
RseI	CAYNNNNRTG	2 cut(s)	983, 1044
SaqAI	TTAA	4 cut(s)	57, 878, 1284, 1482
SatI	GCNGC	3 cut(s)	1026, 1377, 1398
Sau3AI	GATC	4 cut(s)	1152, 1381, 1593, 1681
Sau96I	GGNCC	1 cut(s)	421
SchI	GAGTC	4 cut(s)	182, 686, 1213, 1417
ScrFI	CCNGG	2 cut(s)	857, 1305
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	7 cut(s)	40, 252, 462, 649, 742, 1068, 1588
SfcI	CTRYAG	1 cut(s)	1377
SmiMI	CAYNNNNRTG	2 cut(s)	983, 1044
SseBI	AGGCCT	1 cut(s)	855
SsiI	CCGC	7 cut(s)	169, 221, 467, 475, 554, 1403, 1413
StuI	AGGCCT	1 cut(s)	855
StyD4I	CCNGG	2 cut(s)	855, 1303
TaaI	ACNGT	2 cut(s)	91, 712
TaiI	ACGT	1 cut(s)	509
TaqI	TCGA	5 cut(s)	66, 187, 372, 982, 1155
TatI	WGTACW	3 cut(s)	24, 633, 1309
TfiI	GAWTC	2 cut(s)	962, 1300
Tru1I	TTAA	4 cut(s)	57, 878, 1284, 1482
Tru9I	TTAA	4 cut(s)	57, 878, 1284, 1482
TseFI	GTSAC	1 cut(s)	1037
TseI	GCWGC	3 cut(s)	1025, 1376, 1397
Tsp45I	GTSAC	1 cut(s)	1037
TspGWI	ACGGA	1 cut(s)	1056
Van91I	CCANNNNNTGG	1 cut(s)	27
XapI	RAATTY	5 cut(s)	564, 669, 892, 1012, 1276
XceI	RCATGY	2 cut(s)	634, 1243
XmnI	GAANNNNTTC	1 cut(s)	437
Zsp2I	ATGCAT	3 cut(s)	267, 664, 1581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.