AT5G01370

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011783
Physical Location & Seq
Forward (+)
152446 .. 154467
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G01370.1

Sequence Viewer

Length: 1284 bp
ATGACCCAACGAGCCAACCCTAAGACCGGCTGCCTCACGGCGGTAGTCCGCCGTCTTCTATGCTCTGGTAGCCAACAGACTCACCCTTCCGACAACATCCTCGACTCTGACGAAACACTCCAACTACTAATCTCTTACGAAGAAAACGAAGAGCCAAAGAAAGAGATCAAAACCGAAACCGAAACCCAAAACGATGACGTCTCTCTTCACCCTCCACCACCTCCTCCTCCTCCCAACGTTGTAGCCAAACTCATGGGGCTAGATCATCCCGCACCCGGATCAAAACGGTTCCGGTACTTTGATGATTCCGGTTCGGCTGTCACAAGGAGCAAATCGGTTAACTTCATGGACTACATCCTAAAAGGTCACGAGGAAGAAGAAGAAAACGAAGACGAGAAAGACGGTCAACGTCAGTGCCGGAGAGTCAAAGCTTCCGTTTCTTTCCGTGAGATAGTCCCAACCTCGGCGAGATGGAGCTCTAATAACCAACAAAAGAAACATGATTTCCTGCTGTTGTATCTTGACAAGCTTGACGAGAAGAGAGAACTTGTCGGATCATCGTCTTTTTCGAGGTCTAAAAGGTTCGAGAAGGTTGTGGAAGATTCCAAGAAGCCGCCATTGCCACCTTCGGCGCCGAAGAAGAAGGAGAACGAGAAAGTTGCTAAGAAGTTTAAAGATGAGCCGAGGAAAGTTGCGAAGAAGAAGAAGAGTGAGAATCGAAATGACGTTAACGGAGCCAAGAAAGTTCGTTGGTTTCTTTCTCCATCTAAGAGTAAGTCGTCGTCGGAGAAGACTGCGCTTCTAGGAGAATCAAAGAATATTCGGGCTGATGAGTTTATCGGAAAAGAGAGTGAGTCGCCGGAGAATAAGTCTAACGCGAGTCCGGTTTCGGTTCTTGATCGAGATCTTTATGATTATCTAATCCTTGACGATGATTACTACTTCTCAGGAGGAGATTCAGAAAGTGCATCGGAGTTGTCAACAAAGCAAGTAGAGACAGCAACAAAATCTTCATGTTCTTCATCACCAGCAAAAACAAAAACAAGTACCAAGAAAGAAAACAACAATAGCACCAACAATGATTCAGAAGAGACAGAGTTTATCACAAAACTAATGAATATGCTCTCAGATCTGTCTGAAGAAGACATGAAGTCTTCCACTTGGGTTTCTACTTCGTCAACTAAACCCGTTGACTTTACTCAGGTCGAAGATTTTTGTGTCGAATTTGGTCAAGAGATTCTTGACCTTGTTATGGACCAGCTAGTTGATGAACTCTGTATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

427

Amino Acids

48.12

Weight (kDa)

5.38

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 201
AccB1I GGYRCC 1 cut(s) 631
AccII CGCG 1 cut(s) 878
AciI CCGC 4 cut(s) 41, 49, 270, 614
AclI AACGTT 1 cut(s) 237
AclWI GGATC 2 cut(s) 286, 562
AcsI RAATTY 1 cut(s) 1223
AcuI CTGAAG 1 cut(s) 1158
AcyI GRCGYC 2 cut(s) 198, 632
AfaI GTAC 2 cut(s) 296, 1048
AfiI CCNNNNNNNGG 5 cut(s) 26, 40, 275, 463, 1252
AhdI GACNNNNNGTC 1 cut(s) 1150
AluBI AGCT 4 cut(s) 431, 477, 529, 1261
AluI AGCT 4 cut(s) 431, 477, 529, 1261
Alw21I GWGCWC 1 cut(s) 479
Alw26I GTCTC 3 cut(s) 205, 989, 1085
AlwI GGATC 2 cut(s) 286, 562
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 1 cut(s) 1223
AspLEI GCGC 2 cut(s) 634, 799
AspS9I GGNCC 1 cut(s) 1255
AsuC2I CCSGG 1 cut(s) 276
AsuHPI GGTGA 3 cut(s) 74, 200, 1017
AvaII GGWCC 1 cut(s) 1255
BanI GGYRCC 1 cut(s) 631
BanII GRGCYC 1 cut(s) 479
BauI CACGAG 1 cut(s) 368
BbsI GAAGAC 5 cut(s) 47, 396, 797, 1146, 1149
Bbv12I GWGCWC 1 cut(s) 479
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 465, 772
BceAI ACGGC 2 cut(s) 36, 54
BcgI CGANNNNNNTGC 2 cut(s) 641, 675
BcnI CCSGG 1 cut(s) 276
BcoDI GTCTC 3 cut(s) 205, 989, 1085
BfaI CTAG 4 cut(s) 260, 803, 1262, 1282
BfoI RGCGCY 1 cut(s) 635
BglII AGATCT 2 cut(s) 904, 1129
BisI GCNGC 2 cut(s) 31, 614
BlsI GCNGC 2 cut(s) 32, 615
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 1255
BmeRI GACNNNNNGTC 1 cut(s) 1150
BmgT120I GGNCC 1 cut(s) 1255
BmiI GGNNCC 3 cut(s) 290, 633, 736
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 1 cut(s) 977
BpiI GAAGAC 5 cut(s) 47, 396, 797, 1146, 1149
BpuMI CCSGG 1 cut(s) 276
BsaBI GATNNNNATC 1 cut(s) 903
BsaHI GRCGYC 2 cut(s) 198, 632
BsaJI CCNNGG 2 cut(s) 462, 683
BsaWI WCCGGW 3 cut(s) 291, 308, 883
BsaXI ACNNNNNCTCC 2 cut(s) 854, 884
Bsc4I CCNNNNNNNGG 5 cut(s) 26, 40, 275, 463, 1252
Bse118I RCCGGY 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 617
Bse8I GATNNNNATC 1 cut(s) 903
BseDI CCNNGG 2 cut(s) 462, 683
BseGI GGATG 3 cut(s) 96, 265, 354
BseJI GATNNNNATC 1 cut(s) 903
BseLI CCNNNNNNNGG 5 cut(s) 26, 40, 275, 463, 1252
BseMI GCAATG 1 cut(s) 617
BseMII CTCAG 3 cut(s) 960, 1140, 1214
BseRI GAGGAG 4 cut(s) 213, 216, 219, 966
BseXI GCAGC 1 cut(s) 17
Bsh1236I CGCG 1 cut(s) 878
BshNI GGYRCC 1 cut(s) 631
BsiHKAI GWGCWC 1 cut(s) 479
BsiSI CCGG 7 cut(s) 27, 276, 292, 309, 418, 860, 884
BslFI GGGAC 1 cut(s) 440
BslI CCNNNNNNNGG 5 cut(s) 26, 40, 275, 463, 1252
BsmAI GTCTC 3 cut(s) 205, 989, 1085
BsmBI CGTCTC 1 cut(s) 205
BsmFI GGGAC 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 479
Bsp143I GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
BspACI CCGC 4 cut(s) 41, 49, 270, 614
BspCNI CTCAG 3 cut(s) 959, 1139, 1213
BspFNI CGCG 1 cut(s) 878
BspLI GGNNCC 3 cut(s) 290, 633, 736
BspPI GGATC 2 cut(s) 286, 562
BspQI GCTCTTC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 631
BsrDI GCAATG 1 cut(s) 617
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 462, 683
BssMI GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
BssNI GRCGYC 2 cut(s) 198, 632
BssSI CACGAG 1 cut(s) 368
Bst2BI CACGAG 1 cut(s) 368
Bst4CI ACNGT 2 cut(s) 288, 404
Bst6I CTCTTC 5 cut(s) 144, 210, 533, 701, 1083
BstACI GRCGYC 2 cut(s) 198, 632
BstDEI CTNAG 6 cut(s) 21, 663, 768, 946, 1126, 1200
BstF5I GGATG 3 cut(s) 96, 265, 354
BstFNI CGCG 1 cut(s) 878
BstH2I RGCGCY 1 cut(s) 635
BstHHI GCGC 2 cut(s) 634, 799
BstKTI GATC 7 cut(s) 168, 265, 281, 557, 901, 907, 1132
BstMAI GTCTC 3 cut(s) 205, 989, 1085
BstMBI GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
BstMWI GCNNNNNNNGC 2 cut(s) 69, 619
BstSCI CCNGG 1 cut(s) 274
BstUI CGCG 1 cut(s) 878
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 5 cut(s) 47, 396, 797, 1146, 1149
BstX2I RGATCY 2 cut(s) 904, 1129
BstXI CCANNNNNNTGG 1 cut(s) 253
BstYI RGATCY 2 cut(s) 904, 1129
BtsCI GGATG 3 cut(s) 96, 265, 354
BtsIMutI CAGTG 1 cut(s) 419
CfoI GCGC 2 cut(s) 634, 799
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 1255
Csp6I GTAC 2 cut(s) 295, 1047
CviAII CATG 5 cut(s) 253, 346, 500, 1014, 1147
CviQI GTAC 2 cut(s) 295, 1047
DdeI CTNAG 6 cut(s) 21, 663, 768, 946, 1126, 1200
DinI GGCGCC 1 cut(s) 633
DpnI GATC 7 cut(s) 167, 264, 280, 556, 900, 906, 1131
DpnII GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
DraI TTTAAA 1 cut(s) 673
DriI GACNNNNNGTC 1 cut(s) 1150
Eam1104I CTCTTC 5 cut(s) 144, 210, 533, 701, 1083
Eam1105I GACNNNNNGTC 1 cut(s) 1150
EarI CTCTTC 5 cut(s) 144, 210, 533, 701, 1083
EciI GGCGGA 1 cut(s) 38
Ecl136II GAGCTC 1 cut(s) 477
Eco24I GRGCYC 1 cut(s) 479
Eco47I GGWCC 1 cut(s) 1255
Eco53kI GAGCTC 1 cut(s) 477
Eco57I CTGAAG 1 cut(s) 1158
EcoICRI GAGCTC 1 cut(s) 477
EcoT38I GRGCYC 1 cut(s) 479
EgeI GGCGCC 1 cut(s) 633
EheI GGCGCC 1 cut(s) 633
Esp3I CGTCTC 1 cut(s) 205
FaeI CATG 5 cut(s) 256, 349, 503, 1017, 1150
FaiI YATR 9 cut(s) 61, 254, 347, 501, 912, 1015, 1121, 1148, 1253
FalI AAGNNNNNCTT 2 cut(s) 1224, 1256
FaqI GGGAC 1 cut(s) 440
FatI CATG 5 cut(s) 252, 345, 499, 1013, 1146
FauI CCCGC 1 cut(s) 277
Fnu4HI GCNGC 2 cut(s) 31, 614
FokI GGATG 3 cut(s) 83, 252, 341
FriOI GRGCYC 1 cut(s) 479
Fsp4HI GCNGC 2 cut(s) 31, 614
FspBI CTAG 4 cut(s) 260, 803, 1262, 1282
GlaI GCGC 2 cut(s) 633, 798
GluI GCNGC 2 cut(s) 31, 614
HaeII RGCGCY 1 cut(s) 635
HapII CCGG 7 cut(s) 27, 276, 292, 309, 418, 860, 884
HhaI GCGC 2 cut(s) 634, 799
Hin1I GRCGYC 2 cut(s) 198, 632
Hin1II CATG 5 cut(s) 256, 349, 503, 1017, 1150
Hin6I GCGC 2 cut(s) 632, 797
HinP1I GCGC 2 cut(s) 632, 797
HincII GTYRAC 6 cut(s) 340, 407, 730, 981, 1179, 1192
HindII GTYRAC 6 cut(s) 340, 407, 730, 981, 1179, 1192
HindIII AAGCTT 2 cut(s) 429, 527
HpaI GTTAAC 2 cut(s) 340, 730
HpaII CCGG 7 cut(s) 27, 276, 292, 309, 418, 860, 884
HphI GGTGA 3 cut(s) 74, 200, 1017
Hpy166II GTNNAC 6 cut(s) 340, 407, 730, 981, 1179, 1192
Hpy188III TCNNGA 8 cut(s) 368, 521, 586, 896, 902, 948, 1232, 1241
Hpy8I GTNNAC 6 cut(s) 340, 407, 730, 981, 1179, 1192
Hpy99I CGWCG 2 cut(s) 784, 787
HpyAV CCTTC 4 cut(s) 96, 583, 636, 637
HpyCH4III ACNGT 2 cut(s) 288, 404
HpyCH4IV ACGT 4 cut(s) 198, 237, 409, 726
HpyCH4V TGCA 1 cut(s) 968
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 619
HpyF3I CTNAG 6 cut(s) 21, 663, 768, 946, 1126, 1200
HpySE526I ACGT 4 cut(s) 198, 237, 409, 726
Hsp92I GRCGYC 2 cut(s) 198, 632
Hsp92II CATG 5 cut(s) 256, 349, 503, 1017, 1150
HspAI GCGC 2 cut(s) 632, 797
KasI GGCGCC 1 cut(s) 631
KspAI GTTAAC 2 cut(s) 340, 730
Kzo9I GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
LguI GCTCTTC 1 cut(s) 144
LmnI GCTCC 3 cut(s) 327, 474, 734
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 977
MaeI CTAG 4 cut(s) 260, 803, 1262, 1282
MaeII ACGT 4 cut(s) 198, 237, 409, 726
MaeIII GTNAC 2 cut(s) 319, 365
MalI GATC 7 cut(s) 167, 264, 280, 556, 900, 906, 1131
MboI GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
MflI RGATCY 2 cut(s) 904, 1129
MhlI GDGCHC 1 cut(s) 479
MluCI AATT 1 cut(s) 1223
Mly113I GGCGCC 1 cut(s) 632
MlyI GAGTC 5 cut(s) 73, 98, 432, 863, 889
MmeI TCCRAC 4 cut(s) 114, 145, 532, 765
MseI TTAA 3 cut(s) 339, 672, 729
MspI CCGG 7 cut(s) 27, 276, 292, 309, 418, 860, 884
MspR9I CCNGG 1 cut(s) 276
MvnI CGCG 1 cut(s) 878
MwoI GCNNNNNNNGC 2 cut(s) 69, 619
NarI GGCGCC 1 cut(s) 632
NciI CCSGG 1 cut(s) 276
NdeII GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
NlaIII CATG 5 cut(s) 256, 349, 503, 1017, 1150
NlaIV GGNNCC 3 cut(s) 290, 633, 736
NmeAIII GCCGAG 2 cut(s) 443, 708
NmuCI GTSAC 2 cut(s) 319, 365
PciSI GCTCTTC 1 cut(s) 144
PcsI WCGNNNNNNNCGW 3 cut(s) 108, 144, 566
PfeI GAWTC 7 cut(s) 305, 602, 715, 809, 956, 1082, 1237
PkrI GCNGC 2 cut(s) 32, 615
PleI GAGTC 5 cut(s) 73, 98, 431, 862, 888
PluTI GGCGCC 1 cut(s) 635
PpsI GAGTC 5 cut(s) 73, 98, 431, 862, 888
Psp124BI GAGCTC 1 cut(s) 479
Psp1406I AACGTT 1 cut(s) 237
PspN4I GGNNCC 3 cut(s) 290, 633, 736
PspPI GGNCC 1 cut(s) 1255
PsuI RGATCY 2 cut(s) 904, 1129
RsaI GTAC 2 cut(s) 296, 1048
RsaNI GTAC 2 cut(s) 295, 1047
SacI GAGCTC 1 cut(s) 479
SapI GCTCTTC 1 cut(s) 144
SaqAI TTAA 3 cut(s) 339, 672, 729
SatI GCNGC 2 cut(s) 31, 614
Sau3AI GATC 7 cut(s) 165, 262, 278, 554, 898, 904, 1129
Sau96I GGNCC 1 cut(s) 1255
SchI GAGTC 5 cut(s) 73, 98, 432, 863, 889
ScrFI CCNGG 1 cut(s) 276
SduI GDGCHC 1 cut(s) 479
SfaNI GCATC 1 cut(s) 977
SfoI GGCGCC 1 cut(s) 633
SinI GGWCC 1 cut(s) 1255
Sse9I AATT 1 cut(s) 1223
SsiI CCGC 4 cut(s) 41, 49, 270, 614
SspDI GGCGCC 1 cut(s) 631
SspI AATATT 1 cut(s) 820
SspMI CTAG 4 cut(s) 260, 803, 1262, 1282
SstI GAGCTC 1 cut(s) 479
StyD4I CCNGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 288, 404
TaiI ACGT 4 cut(s) 201, 240, 412, 729
TaqI TCGA 7 cut(s) 102, 569, 585, 718, 901, 1206, 1221
TasI AATT 1 cut(s) 1223
TauI GCSGC 1 cut(s) 616
TfiI GAWTC 7 cut(s) 305, 602, 715, 809, 956, 1082, 1237
Tru1I TTAA 3 cut(s) 339, 672, 729
Tru9I TTAA 3 cut(s) 339, 672, 729
TscAI CASTG 1 cut(s) 419
TseFI GTSAC 2 cut(s) 319, 365
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 2 cut(s) 319, 365
TspDTI ATGAA 6 cut(s) 334, 1002, 1011, 1130, 1163, 1284
TspGWI ACGGA 3 cut(s) 424, 434, 747
TspRI CASTG 1 cut(s) 419
VpaK11BI GGWCC 1 cut(s) 1255
XapI RAATTY 1 cut(s) 1223
XspI CTAG 4 cut(s) 260, 803, 1262, 1282
ZraI GACGTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.