Prupe.6G278700_v2.0.a1

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011783
Physical Location & Seq
Reverse (-)
26135847 .. 26137831
1985 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G278700.1

Sequence Viewer

Length: 1311 bp
ATGAGTGGTAGTGGGAGAAGTTCAAGTTCAGTGAACCAGAGCTCTGACTGCTTCAATGGCGTCTTGCGCAGGCTTCTGTGCTCTGGAAGCGTCCCTACTCACCCAACAGATCAAATTGCGGAACCTTATACAACCCAACTCACTCTGCTCCCAGAAAAACCAAACCCTGATCTCAAAATCCAATCTTCAGCTTCTTCTGTCACGCCTGGCATAGTGGCAAGGCTGATGGGTTTAGACTCTTTGCCAGAAACAAATTGGGTTTCGAAAGGAAGACCAGATTTGGTTAGCCGAAGTAGGTCAGTGAGTTTTGCTGATTACTTGATGGATTTTGATTTGGCTGATCAAGATCGTCAGCATCATCATCGCCGGGTTCGAACCTCAGTCTCTTTCCGGGAAGTCCCGGCGGCTCTGAATCATCAGAAAAGTCCTGATTTTCTTCTTGTGTACTTGGACAATGTGGATAAATCAAAGGAGATTGGGTCGAAGGTGAAGAAATCTGAGATGGGTTTTGGAGAGCTGAAGCAGGGGAAGAAGGAACAGAGAAGTAGGAACAAGGAGAACAGCAAAAGAGAGAGTGATGAGATTATGAAGCAGAAGAAGAAGAAGGAGAAAATGGTAGCCGTAAAACAAAACAAGAAGATTTCTAAGTTGAAGGATGAGCCTAGAAGAGAATGTGGCGCACAATCTTCAAAATCAAAGGGTTTGGGGTACTCTGTTTCTCCCGATAAGAAGACCAGTTACAAGAATGGTGGTGCTGCGAATTTTAAGGAAAGTAGCGATCGTCATCAGCTGAAGAAGACAACCCAGAAGAAGAAAGCCGTGGAGGAACCAAGAATCAAGAAGACAAACCATCAACTTGCATTTGCCAAGGAAAAAGAGGCTGCTGGTTTTCATGGCTTAGAGAACACAAGCCCTGTTTCTGTTCTCTACATTGATGACATGTTGATCCAACATGAAGCTTGGTTATCAGGATATTCAATGCCTATGGATTTGAACTCCAACATGAAATCTTCACCAAAAGCTCCTTACATTGCCGACCCTGAAGTCAGAACAGCCAGGAGAAAAGATTTTGAGCCAACTAAAGACGAAGACACCAGGGATTACGCAGAGCTGCTGGCTTCCAAAATCCAAAGGTGGACAGAGGAGGATTTGAAAGAGTCAAATTGGGTAGCCAAGAATGTGTCTGGGTTCGAAGCTTATGAAGAAATTTGCGTGGAGTTTGAAGGGCTGATCCTTGACATGCTACTGCGCCAGGGCATTGATGAGTTTGTGCAGATTTCTCATGAAAATCTGTGGCCCTGCAGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

437

Amino Acids

49.26

Weight (kDa)

9.02

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1043
Acc16I TGCGCA 1 cut(s) 68
AciI CCGC 2 cut(s) 119, 404
AclWI GGATC 2 cut(s) 940, 1225
AcsI RAATTY 2 cut(s) 760, 1206
AcuI CTGAAG 4 cut(s) 171, 539, 812, 1062
AcyI GRCGYC 1 cut(s) 60
AfaI GTAC 2 cut(s) 446, 710
AflIII ACRYGT 1 cut(s) 939
AgsI TTSAA 8 cut(s) 24, 55, 652, 690, 978, 994, 1153, 1223
AjnI CCWGG 4 cut(s) 205, 1055, 1094, 1251
AluBI AGCT 8 cut(s) 42, 191, 517, 790, 959, 1022, 1111, 1196
AluI AGCT 8 cut(s) 42, 191, 517, 790, 959, 1022, 1111, 1196
Alw21I GWGCWC 2 cut(s) 44, 83
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 2 cut(s) 940, 1225
AoxI GGCC 1 cut(s) 1295
ApeKI GCWGC 3 cut(s) 755, 881, 1111
ApoI RAATTY 2 cut(s) 760, 1206
AspLEI GCGC 3 cut(s) 69, 680, 1251
AspS9I GGNCC 1 cut(s) 1296
AsuC2I CCSGG 3 cut(s) 368, 392, 401
AsuHPI GGTGA 3 cut(s) 92, 499, 1005
AsuII TTCGAA 3 cut(s) 263, 373, 1191
BanII GRGCYC 1 cut(s) 44
BarI GAAGNNNNNNTAC 4 cut(s) 79, 111, 722, 754
BbsI GAAGAC 5 cut(s) 277, 737, 803, 848, 1095
Bbv12I GWGCWC 2 cut(s) 44, 83
BbvI GCAGC 3 cut(s) 742, 868, 1098
BccI CCATC 4 cut(s) 220, 316, 496, 858
BceAI ACGGC 2 cut(s) 605, 803
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BciT130I CCWGG 4 cut(s) 207, 1057, 1096, 1253
BclI TGATCA 1 cut(s) 340
BcnI CCSGG 3 cut(s) 368, 392, 401
BcoDI GTCTC 1 cut(s) 388
BfaI CTAG 1 cut(s) 663
BfmI CTRYAG 1 cut(s) 1300
BisI GCNGC 4 cut(s) 405, 756, 882, 1112
BlsI GCNGC 4 cut(s) 406, 757, 883, 1113
Bme1390I CCNGG 7 cut(s) 207, 368, 392, 401, 1057, 1096, 1253
BmgT120I GGNCC 1 cut(s) 1296
BmiI GGNNCC 2 cut(s) 123, 828
BmrFI CCNGG 7 cut(s) 207, 368, 392, 401, 1057, 1096, 1253
BmsI GCATC 1 cut(s) 364
BpiI GAAGAC 5 cut(s) 277, 737, 803, 848, 1095
Bpu14I TTCGAA 3 cut(s) 263, 373, 1191
BpuMI CCSGG 3 cut(s) 368, 392, 401
BsaBI GATNNNNATC 2 cut(s) 345, 783
BsaHI GRCGYC 1 cut(s) 60
BsaJI CCNNGG 4 cut(s) 819, 867, 1095, 1252
BsaXI ACNNNNNCTCC 2 cut(s) 464, 494
Bse1I ACTGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 1029
Bse8I GATNNNNATC 2 cut(s) 345, 783
BseBI CCWGG 4 cut(s) 207, 1057, 1096, 1253
BseDI CCNNGG 4 cut(s) 819, 867, 1095, 1252
BseGI GGATG 1 cut(s) 661
BseJI GATNNNNATC 2 cut(s) 345, 783
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 2 cut(s) 393, 489
BseNI ACTGG 1 cut(s) 735
BseRI GAGGAG 1 cut(s) 1157
BseXI GCAGC 3 cut(s) 742, 868, 1098
BsgI GTGCAG 1 cut(s) 1292
Bsh1285I CGRYCG 1 cut(s) 781
BshFI GGCC 1 cut(s) 1297
BsiEI CGRYCG 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 44, 83
BsiSI CCGG 3 cut(s) 367, 391, 401
BslFI GGGAC 2 cut(s) 77, 383
BsmAI GTCTC 1 cut(s) 388
BsmFI GGGAC 2 cut(s) 77, 383
BsnI GGCC 1 cut(s) 1297
Bsp119I TTCGAA 3 cut(s) 263, 373, 1191
Bsp1286I GDGCHC 2 cut(s) 44, 83
Bsp143I GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
BspACI CCGC 2 cut(s) 119, 404
BspANI GGCC 1 cut(s) 1297
BspCNI CTCAG 2 cut(s) 392, 490
BspHI TCATGA 1 cut(s) 1282
BspLI GGNNCC 2 cut(s) 123, 828
BspMAI CTGCAG 1 cut(s) 1304
BspPI GGATC 2 cut(s) 940, 1225
BspT104I TTCGAA 3 cut(s) 263, 373, 1191
BsrDI GCAATG 1 cut(s) 1029
BsrI ACTGG 1 cut(s) 735
BssECI CCNNGG 4 cut(s) 819, 867, 1095, 1252
BssMI GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
BssNI GRCGYC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 867
Bst2UI CCWGG 4 cut(s) 207, 1057, 1096, 1253
Bst6I CTCTTC 1 cut(s) 661
BstACI GRCGYC 1 cut(s) 60
BstBI TTCGAA 3 cut(s) 263, 373, 1191
BstC8I GCNNGC 2 cut(s) 71, 1116
BstDEI CTNAG 4 cut(s) 379, 498, 645, 898
BstDSI CCRYGG 1 cut(s) 819
BstF5I GGATG 1 cut(s) 661
BstHHI GCGC 3 cut(s) 69, 680, 1251
BstKTI GATC 7 cut(s) 112, 172, 343, 349, 781, 948, 1233
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
BstMCI CGRYCG 1 cut(s) 781
BstMWI GCNNNNNNNGC 4 cut(s) 48, 57, 66, 87
BstNI CCWGG 4 cut(s) 207, 1057, 1096, 1253
BstNSI RCATGY 2 cut(s) 943, 1243
BstSCI CCNGG 7 cut(s) 205, 366, 390, 399, 1055, 1094, 1251
BstSFI CTRYAG 1 cut(s) 1300
BstV1I GCAGC 3 cut(s) 742, 868, 1098
BstV2I GAAGAC 5 cut(s) 277, 737, 803, 848, 1095
BsuRI GGCC 1 cut(s) 1297
BtgI CCRYGG 1 cut(s) 819
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 661
BtsI GCAGTG 1 cut(s) 1309
BtsIMutI CAGTG 3 cut(s) 36, 306, 1309
Cac8I GCNNGC 2 cut(s) 71, 1116
CciI TCATGA 1 cut(s) 1282
CfoI GCGC 3 cut(s) 69, 680, 1251
Cfr13I GGNCC 1 cut(s) 1296
CseI GACGC 2 cut(s) 49, 79
Csp6I GTAC 2 cut(s) 445, 709
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 6 cut(s) 893, 940, 953, 1003, 1240, 1283
CviQI GTAC 2 cut(s) 445, 709
DdeI CTNAG 4 cut(s) 379, 498, 645, 898
DpnI GATC 7 cut(s) 111, 171, 342, 348, 780, 947, 1232
DpnII GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
DrdI GACNNNNNNGTC 1 cut(s) 1043
DseDI GACNNNNNNGTC 1 cut(s) 1043
Eam1104I CTCTTC 1 cut(s) 661
EarI CTCTTC 1 cut(s) 661
Ecl136II GAGCTC 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 867
Eco24I GRGCYC 1 cut(s) 44
Eco53kI GAGCTC 1 cut(s) 42
Eco57I CTGAAG 4 cut(s) 171, 539, 812, 1062
EcoICRI GAGCTC 1 cut(s) 42
EcoRII CCWGG 4 cut(s) 205, 1055, 1094, 1251
EcoT14I CCWWGG 1 cut(s) 867
EcoT38I GRGCYC 1 cut(s) 44
ErhI CCWWGG 1 cut(s) 867
FaeI CATG 6 cut(s) 896, 943, 956, 1006, 1243, 1286
FaqI GGGAC 2 cut(s) 77, 383
FatI CATG 6 cut(s) 892, 939, 952, 1002, 1239, 1282
FbaI TGATCA 1 cut(s) 340
Fnu4HI GCNGC 4 cut(s) 405, 756, 882, 1112
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 405, 756, 882, 1112
FspBI CTAG 1 cut(s) 663
FspI TGCGCA 1 cut(s) 68
GlaI GCGC 3 cut(s) 68, 679, 1250
GluI GCNGC 4 cut(s) 405, 756, 882, 1112
HaeIII GGCC 1 cut(s) 1297
HapII CCGG 3 cut(s) 367, 391, 401
HgaI GACGC 2 cut(s) 49, 79
HhaI GCGC 3 cut(s) 69, 680, 1251
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 6 cut(s) 896, 943, 956, 1006, 1243, 1286
Hin6I GCGC 3 cut(s) 67, 678, 1249
HinP1I GCGC 3 cut(s) 67, 678, 1249
HindIII AAGCTT 2 cut(s) 957, 1194
HinfI GANTC 4 cut(s) 236, 412, 834, 1157
HpaII CCGG 3 cut(s) 367, 391, 401
HphI GGTGA 3 cut(s) 92, 499, 1005
Hpy166II GTNNAC 3 cut(s) 34, 445, 1137
Hpy188I TCNGA 5 cut(s) 46, 411, 420, 499, 1049
Hpy188III TCNNGA 7 cut(s) 84, 344, 428, 722, 838, 969, 1283
Hpy8I GTNNAC 3 cut(s) 34, 445, 1137
HpyAV CCTTC 5 cut(s) 478, 526, 598, 646, 1217
HpyCH4V TGCA 3 cut(s) 860, 1273, 1302
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 57, 66, 87
HpyF3I CTNAG 4 cut(s) 379, 498, 645, 898
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 6 cut(s) 896, 943, 956, 1006, 1243, 1286
HspAI GCGC 3 cut(s) 67, 678, 1249
Ksp22I TGATCA 1 cut(s) 340
Kzo9I GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
LmnI GCTCC 2 cut(s) 153, 1027
Lsp1109I GCAGC 3 cut(s) 742, 868, 1098
LweI GCATC 1 cut(s) 364
MaeI CTAG 1 cut(s) 663
MaeIII GTNAC 2 cut(s) 199, 737
MalI GATC 7 cut(s) 111, 171, 342, 348, 780, 947, 1232
MboI GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
MhlI GDGCHC 2 cut(s) 44, 83
MluCI AATT 5 cut(s) 114, 253, 760, 1162, 1206
MlyI GAGTC 2 cut(s) 230, 1166
MmeI TCCRAC 2 cut(s) 973, 1023
MnlI CCTC 5 cut(s) 388, 817, 871, 1135, 1138
MseI TTAA 1 cut(s) 765
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 3 cut(s) 367, 391, 401
MspR9I CCNGG 7 cut(s) 207, 368, 392, 401, 1057, 1096, 1253
MvaI CCWGG 4 cut(s) 207, 1057, 1096, 1253
MwoI GCNNNNNNNGC 4 cut(s) 48, 57, 66, 87
NciI CCSGG 3 cut(s) 368, 392, 401
NdeII GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
NlaIII CATG 6 cut(s) 896, 943, 956, 1006, 1243, 1286
NlaIV GGNNCC 2 cut(s) 123, 828
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 68
NspI RCATGY 2 cut(s) 943, 1243
NspV TTCGAA 3 cut(s) 263, 373, 1191
PagI TCATGA 1 cut(s) 1282
PciI ACATGT 1 cut(s) 939
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PfeI GAWTC 2 cut(s) 412, 834
PfoI TCCNGGA 1 cut(s) 390
PkrI GCNGC 4 cut(s) 406, 757, 883, 1113
Ple19I CGATCG 1 cut(s) 781
PleI GAGTC 2 cut(s) 230, 1165
PpsI GAGTC 2 cut(s) 230, 1165
PscI ACATGT 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 44
Psp6I CCWGG 4 cut(s) 205, 1055, 1094, 1251
PspGI CCWGG 4 cut(s) 205, 1055, 1094, 1251
PspN4I GGNNCC 2 cut(s) 123, 828
PspPI GGNCC 1 cut(s) 1296
PstI CTGCAG 1 cut(s) 1304
PvuI CGATCG 1 cut(s) 781
PvuII CAGCTG 1 cut(s) 790
RsaI GTAC 2 cut(s) 446, 710
RsaNI GTAC 2 cut(s) 445, 709
SacI GAGCTC 1 cut(s) 44
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 4 cut(s) 405, 756, 882, 1112
Sau3AI GATC 7 cut(s) 109, 169, 340, 346, 778, 945, 1230
Sau96I GGNCC 1 cut(s) 1296
SchI GAGTC 2 cut(s) 230, 1166
ScrFI CCNGG 7 cut(s) 207, 368, 392, 401, 1057, 1096, 1253
SduI GDGCHC 2 cut(s) 44, 83
SfaNI GCATC 1 cut(s) 364
SfcI CTRYAG 1 cut(s) 1300
SfuI TTCGAA 3 cut(s) 263, 373, 1191
Sse9I AATT 5 cut(s) 114, 253, 760, 1162, 1206
SsiI CCGC 2 cut(s) 119, 404
SspMI CTAG 1 cut(s) 663
SstI GAGCTC 1 cut(s) 44
StyD4I CCNGG 7 cut(s) 205, 366, 390, 399, 1055, 1094, 1251
StyI CCWWGG 1 cut(s) 867
TaqI TCGA 4 cut(s) 263, 373, 482, 1191
TasI AATT 5 cut(s) 114, 253, 760, 1162, 1206
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 407
TfiI GAWTC 2 cut(s) 412, 834
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 3 cut(s) 36, 306, 1309
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 3 cut(s) 755, 881, 1111
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 6 cut(s) 602, 881, 969, 1019, 1215, 1299
TspRI CASTG 3 cut(s) 36, 306, 1309
XapI RAATTY 2 cut(s) 760, 1206
XceI RCATGY 2 cut(s) 943, 1243
XcmI CCANNNNNNNNNTGG 1 cut(s) 252
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.