Rroxscaffold_6G00417130

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0011783
Physical Location & Seq
Reverse (-)
38958666 .. 38960434
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417130.1

Sequence Viewer

Length: 1293 bp
ATGACCGAGAACTCTAGCTGTTTCAACGGCATCGTACGCCGGCTTTTATGCACCGGCAACGTTCCGACTCACCCATCAGCAGATTACATTCTAGACTCTAACCCATCCCAACTCGCTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAACTTTACCTTCGCCTTCGGCTACAGCCACGCCTGGAATAGTAGCCAGGTTAATGGGGCTGGAGTCACTTCCCGAGACGAACTGGGTGAGAGCCCCGGATTTGGTTACCAGAAGCAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTTGATTTGACTCCGACTAATCAGCACCGCCGTGTCCGGACCTCCGTCTCTTTCAGGGAGGTTCCGGCGGTTATGAGTCAGCCGGAGAGTCAGGATTTTCTGGTGGTGTATTTGGATAGTGTGGATCAGGGGAAGGAGTTCGGGTCGAAAGTGAAGAAAACAGAGGAAGTGAAACAGGGGAAGGAACAGAGGAGTAAGAACAGAGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAGGTGGTGAAGAAAAATAGCAAGAAGGTTTCCAAGTTGAAAGATGAGCCTAGAAGAGAATGTAGTGCTCAATCTTCGAAGGTTTCGAAGTTGAAAGATGAGCCTAGAAGAGAATGTAGTGCCCAATCTTCGAAGGTTAGTCGTAATTGCAAAGGAGACGAGGGTTTGGGGTACTCTGTTCCTTATAAGAAGGTTGTGAGCAAAAATGGTGGAGCAAACTTAAGAGAAGGTAGTGGGGAACATACTCCACCGAAGAAAACGACGACTCAGAAGAAGAAGAAAGTGGTGCAAGAGCCAAAATTCAAGAAGGGAAAACATCAGAATGAAGCTAAGAAAAGAGAGGCTGTTGATAATAGTTCGTGCTCGGAGAATTCAAGCCCTGTTTCGGTTTTTGATATTGATGACATTTTGATCCAACATGAAACTTGGATATCAGAATATTCAAGTCCCAAGGATTTGAAATCCCAGATGAAATCTCCACCAAGAGTTTCTTACAATGAAGACCCTGAATTGAGAGCAGTCAAAATCAAAGAGATGGAGCCAATTAAGAACGAGGACAGCGGAGATTCCACGGAGCTTTTGGCGACAAAAGTCTTCAGGTTGACAGAAGAAGAATTGAAAGAGTCAAATTGGGTATCAAAGAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTTGAGGGACTGATCCTTGATGTGCTACTGAACCAGGCCATTGATGACATTGTCCAGCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

430

Amino Acids

48.39

Weight (kDa)

8.69

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 2.3e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 3 cut(s) 331, 371, 1104
AclI AACGTT 1 cut(s) 60
AclWI GGATC 3 cut(s) 435, 949, 1234
AcsI RAATTY 2 cut(s) 842, 913
AcuI CTGAAG 1 cut(s) 1123
AfaI GTAC 2 cut(s) 36, 716
AfiI CCNNNNNNNGG 2 cut(s) 256, 928
AflII CTTAAG 1 cut(s) 763
AgsI TTSAA 8 cut(s) 25, 583, 637, 847, 918, 987, 1003, 1162
AjnI CCWGG 3 cut(s) 187, 200, 1260
AleI CACNNNNGTG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 18, 282, 872, 1120, 1285
AluI AGCT 5 cut(s) 18, 282, 872, 1120, 1285
Alw21I GWGCWC 2 cut(s) 613, 908
Alw26I GTCTC 3 cut(s) 224, 355, 693
AlwI GGATC 3 cut(s) 435, 949, 1234
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 1263
ApoI RAATTY 2 cut(s) 842, 913
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 5 cut(s) 62, 253, 289, 532, 562
AsuII TTCGAA 4 cut(s) 620, 629, 674, 1209
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 667
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 1050, 1129
Bbv12I GWGCWC 2 cut(s) 613, 908
BccI CCATC 4 cut(s) 82, 112, 292, 1072
BceAI ACGGC 2 cut(s) 43, 318
BciT130I CCWGG 3 cut(s) 189, 202, 1262
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 3 cut(s) 224, 355, 693
BfaI CTAG 4 cut(s) 15, 92, 594, 648
BfmI CTRYAG 1 cut(s) 177
BfrI CTTAAG 1 cut(s) 763
Bme1390I CCNGG 4 cut(s) 189, 202, 251, 1262
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 366, 1083
BmrFI CCNGG 4 cut(s) 189, 202, 251, 1262
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 247
BoxI GACNNNNGTC 2 cut(s) 347, 1133
BpiI GAAGAC 2 cut(s) 1050, 1129
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 4 cut(s) 620, 629, 674, 1209
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 249, 993, 1113
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 928
Bse118I RCCGGY 2 cut(s) 39, 53
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 189, 202, 1262
BseDI CCNNGG 3 cut(s) 249, 993, 1113
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 2 cut(s) 256, 928
BseMII CTCAG 1 cut(s) 824
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 667
BshFI GGCC 1 cut(s) 1265
BsiHKAI GWGCWC 2 cut(s) 613, 908
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 2 cut(s) 975, 1248
BslI CCNNNNNNNGG 2 cut(s) 256, 928
BsmAI GTCTC 3 cut(s) 224, 355, 693
BsmBI CGTCTC 3 cut(s) 224, 355, 693
BsmFI GGGAC 2 cut(s) 975, 1248
BsnI GGCC 1 cut(s) 1265
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 4 cut(s) 620, 629, 674, 1209
Bsp1286I GDGCHC 4 cut(s) 250, 613, 667, 908
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 3 cut(s) 427, 954, 1239
BspACI CCGC 3 cut(s) 331, 371, 1104
BspANI GGCC 1 cut(s) 1265
BspCNI CTCAG 1 cut(s) 823
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 366, 1083
BspPI GGATC 3 cut(s) 435, 949, 1234
BspT104I TTCGAA 4 cut(s) 620, 629, 674, 1209
BspTI CTTAAG 1 cut(s) 763
BsrFI RCCGGY 2 cut(s) 39, 53
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 39, 53
BssECI CCNNGG 3 cut(s) 249, 993, 1113
BssMI GATC 3 cut(s) 427, 954, 1239
BssT1I CCWWGG 1 cut(s) 993
Bst2UI CCWGG 3 cut(s) 189, 202, 1262
Bst6I CTCTTC 3 cut(s) 534, 592, 646
BstAFI CTTAAG 1 cut(s) 763
BstBI TTCGAA 4 cut(s) 620, 629, 674, 1209
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 810, 873
BstDSI CCRYGG 1 cut(s) 1113
BstEII GGTNACC 1 cut(s) 259
BstF5I GGATG 1 cut(s) 104
BstKTI GATC 3 cut(s) 430, 957, 1242
BstMAI GTCTC 3 cut(s) 224, 355, 693
BstMBI GATC 3 cut(s) 427, 954, 1239
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 189, 202, 1262
BstPAI GACNNNNGTC 2 cut(s) 347, 1133
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 4 cut(s) 187, 200, 249, 1260
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 667
BstV2I GAAGAC 2 cut(s) 1050, 1129
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 1265
BtgI CCRYGG 1 cut(s) 1113
BtsCI GGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 39, 53
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 35, 715
CspCI CAANNNNNGTGG 4 cut(s) 733, 768, 1170, 1205
CviAII CATG 2 cut(s) 140, 962
CviQI GTAC 2 cut(s) 35, 715
DdeI CTNAG 2 cut(s) 810, 873
DpnI GATC 3 cut(s) 429, 956, 1241
DpnII GATC 3 cut(s) 427, 954, 1239
Eam1104I CTCTTC 3 cut(s) 534, 592, 646
EarI CTCTTC 3 cut(s) 534, 592, 646
Eco130I CCWWGG 1 cut(s) 993
Eco24I GRGCYC 1 cut(s) 250
Eco32I GATATC 1 cut(s) 975
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 1123
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 913
EcoRII CCWGG 3 cut(s) 187, 200, 1260
EcoRV GATATC 1 cut(s) 975
EcoT14I CCWWGG 1 cut(s) 993
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 993
Esp3I CGTCTC 3 cut(s) 224, 355, 693
FaeI CATG 2 cut(s) 143, 965
FaiI YATR 7 cut(s) 49, 141, 377, 729, 786, 963, 1200
FalI AAGNNNNNCTT 2 cut(s) 1018, 1050
FaqI GGGAC 2 cut(s) 975, 1248
FatI CATG 2 cut(s) 139, 961
FokI GGATG 1 cut(s) 91
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 4 cut(s) 15, 92, 594, 648
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 1265
HapII CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
Hin1II CATG 2 cut(s) 143, 965
HincII GTYRAC 1 cut(s) 1146
HindII GTYRAC 1 cut(s) 1146
HpaII CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
HphI GGTGA 5 cut(s) 62, 253, 289, 532, 562
Hpy166II GTNNAC 1 cut(s) 1146
Hpy188I TCNGA 6 cut(s) 66, 318, 813, 864, 910, 979
Hpy188III TCNNGA 5 cut(s) 92, 227, 340, 395, 847
Hpy8I GTNNAC 1 cut(s) 1146
Hpy99I CGWCG 1 cut(s) 808
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 51, 287, 693, 832
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 810, 873
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 143, 965
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 427, 954, 1239
LmnI GCTCC 3 cut(s) 755, 1081, 1117
LweI GCATC 1 cut(s) 39
MaeI CTAG 4 cut(s) 15, 92, 594, 648
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 2 cut(s) 219, 259
MalI GATC 3 cut(s) 429, 956, 1241
MboI GATC 3 cut(s) 427, 954, 1239
MhlI GDGCHC 4 cut(s) 250, 613, 667, 908
MluCI AATT 7 cut(s) 688, 842, 913, 1052, 1086, 1157, 1171
MlyI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 802, 1175
MmeI TCCRAC 3 cut(s) 89, 341, 982
MnlI CCTC 9 cut(s) 355, 355, 460, 486, 511, 697, 877, 1090, 1225
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 5 cut(s) 206, 525, 764, 1089, 1291
MslI CAYNNNNRTG 2 cut(s) 333, 864
MspA1I CMGCKG 1 cut(s) 1104
MspCI CTTAAG 1 cut(s) 763
MspI CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
MspR9I CCNGG 4 cut(s) 189, 202, 251, 1262
MvaI CCWGG 3 cut(s) 189, 202, 1262
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 251
NdeII GATC 3 cut(s) 427, 954, 1239
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 143, 965
NlaIV GGNNCC 2 cut(s) 366, 1083
NmuCI GTSAC 1 cut(s) 219
NspV TTCGAA 4 cut(s) 620, 629, 674, 1209
OliI CACNNNNGTG 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 626
PdiI GCCGGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 1109, 1206
Pfl23II CGTACG 1 cut(s) 34
PflFI GACNNNGTC 1 cut(s) 1277
PleI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 802, 1174
PpsI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 802, 1174
PshAI GACNNNNGTC 2 cut(s) 347, 1133
PsiI TTATAA 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 187, 200, 1260
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 3 cut(s) 187, 200, 1260
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 366, 1083
PspPI GGNCC 1 cut(s) 342
PsyI GACNNNGTC 1 cut(s) 1277
RsaI GTAC 2 cut(s) 36, 716
RsaNI GTAC 2 cut(s) 35, 715
RseI CAYNNNNRTG 2 cut(s) 333, 864
SaqAI TTAA 5 cut(s) 206, 525, 764, 1089, 1291
Sau3AI GATC 3 cut(s) 427, 954, 1239
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 802, 1175
ScrFI CCNGG 4 cut(s) 189, 202, 251, 1262
SduI GDGCHC 4 cut(s) 250, 613, 667, 908
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 4 cut(s) 620, 629, 674, 1209
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 333, 864
SmlI CTYRAG 1 cut(s) 763
SmoI CTYRAG 1 cut(s) 763
Sse9I AATT 7 cut(s) 688, 842, 913, 1052, 1086, 1157, 1171
SsiI CCGC 3 cut(s) 331, 371, 1104
SspI AATATT 1 cut(s) 983
SspMI CTAG 4 cut(s) 15, 92, 594, 648
StyD4I CCNGG 4 cut(s) 187, 200, 249, 1260
StyI CCWWGG 1 cut(s) 993
TaiI ACGT 1 cut(s) 63
TaqI TCGA 6 cut(s) 449, 620, 629, 674, 1194, 1209
TaqII GACCGA 1 cut(s) 20
TasI AATT 7 cut(s) 688, 842, 913, 1052, 1086, 1157, 1171
TfiI GAWTC 2 cut(s) 1109, 1206
Tru1I TTAA 5 cut(s) 206, 525, 764, 1089, 1291
Tru9I TTAA 5 cut(s) 206, 525, 764, 1089, 1291
TseFI GTSAC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 219
TspDTI ATGAA 7 cut(s) 156, 552, 882, 978, 1028, 1056, 1215
TspGWI ACGGA 2 cut(s) 337, 1130
Tth111I GACNNNGTC 1 cut(s) 1277
Vha464I CTTAAG 1 cut(s) 763
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 2 cut(s) 842, 913
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1120
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 4 cut(s) 15, 92, 594, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.