FvH4_6g11320

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0011783
Physical Location & Seq
Forward (+)
6732196 .. 6734082
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g11320.t2

Sequence Viewer

Length: 1290 bp
ATGACTGAGAATTCAAGCTGTTTCAATGGCATCCTACGCCGGCTTCTATGCACCGGTAACGTTCCGACTCATCCATCATTAGATTACATTTCAGACTCAAACCCAACCCAACTCACTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAGCTTTACCTTCTCCTTCGGCTAATGTAACACCCGGAATAGTAGCCAGGCTAATGGGGCTGGATTCTCTGCCGGAGTCCAACTGGGTGAGAGCCCCGGATTCTGTTACTAGAAGCAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTCGATATAGCTCCGGCGAATCAGCACCGCCGTGTCCGGACCTCCGTCTCTTTTAGGGAGGTTCCGGCGGTGCTGAGTCAGGAGGAGGGGAAGGAGTTTCTGGTGGTGTATTTGGATAGTGTGGATAAGGAAAAGGAGTTTGGGGTTAAAGTGAAGAAAACAGAGGAGGTGAGGATTAAAGTGAAGAAAACAGAGGAGGTGAAACAGGGGAAGGAACAGAGGAGTAAGAAGAAAGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAAGTGGTGAAGAAAAATAGCAAGAAGGTTTCCAAGTTGAAAGATGTGCCTAGAAGGGAATGTGATGCTCAATCTTCGAGGGTTAATCGTGATTCCAAAGGAGATGAGGTAAAGAAGGTCGTGAGCAAAAATGGTGGTGCTAATTTAAGAGAAGGTAGTGGGGAGCGTAGTCCACTGAAGAAAACGACGACTCCGAAGAAGAAGAAAGTGGTGGTAGAACCAAAGTTCAAGAAGGGAAATCATCAAAATGCAGCTAAGAAAAGAGAGGCAGTGGATAATAGTTCCTGCTCGGAGAATTCAAGCCCTGTTTCTGTTTTTGATATTGATGACATTTTGATCCAACATGAAACTTGGTTATCAGAATATTCTAGTCCCAAGGATTTGAAATCCCAGATGAAATCCCCACCAAGAGTTTCGTACAATGAAGACCCTGAATTGAGAGCAGTCAGATTCAAAGATATGGAGCCAGTTAAGAACGAGGACAGTGAAGATTACACTGAGCTTATGGCAAGCAAAATCTTCAAAATGACAGAAGAGGAATTGAAAGAGTCAGATTGGGTATCAAATAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTCGAGGGGCTGATCCTAGATGTGCTAGTGAACCAGGCCATTGATGATCTTGTGCAGCTTAATTTCTTAAGCTTGAAGAAGAAGAAGCTGTCTGAAATTTGTATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

430

Amino Acids

48.62

Weight (kDa)

8.8

Isoelectric Point (pI)

50.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 4.1e-08 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 2 cut(s) 331, 371
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 904, 1189
AcsI RAATTY 3 cut(s) 10, 868, 1278
AcuI CTGAAG 1 cut(s) 770
AfaI GTAC 1 cut(s) 992
AflII CTTAAG 1 cut(s) 1249
AgeI ACCGGT 1 cut(s) 53
AjnI CCWGG 2 cut(s) 200, 1215
AjuI GAANNNNNNNTTGG 2 cut(s) 426, 458
AleI CACNNNNGTG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 9 cut(s) 18, 158, 282, 314, 827, 1075, 1240, 1254, 1270
AluI AGCT 9 cut(s) 18, 158, 282, 314, 827, 1075, 1240, 1254, 1270
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 2 cut(s) 904, 1189
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 1218
ApeKI GCWGC 2 cut(s) 824, 1237
ApoI RAATTY 3 cut(s) 10, 868, 1278
AsiGI ACCGGT 1 cut(s) 53
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 2 cut(s) 189, 251
AsuHPI GGTGA 6 cut(s) 253, 289, 484, 514, 562, 592
AsuII TTCGAA 1 cut(s) 1164
AvaII GGWCC 1 cut(s) 342
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 2 cut(s) 836, 1249
BccI CCATC 2 cut(s) 82, 292
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 2 cut(s) 202, 1217
BcnI CCSGG 2 cut(s) 189, 251
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 5 cut(s) 264, 624, 942, 1199, 1208
BfrI CTTAAG 1 cut(s) 1249
BisI GCNGC 2 cut(s) 825, 1238
BlsI GCNGC 2 cut(s) 826, 1239
Bme1390I CCNGG 4 cut(s) 189, 202, 251, 1217
Bme18I GGWCC 1 cut(s) 342
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 366, 1038
BmrFI CCNGG 4 cut(s) 189, 202, 251, 1217
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 39, 628
BmuI ACTGGG 1 cut(s) 247
BoxI GACNNNNGTC 1 cut(s) 347
BpiI GAAGAC 1 cut(s) 1005
Bpu14I TTCGAA 1 cut(s) 1164
BpuMI CCSGG 2 cut(s) 189, 251
BsaJI CCNNGG 2 cut(s) 249, 948
BsaWI WCCGGW 2 cut(s) 53, 339
BsaXI ACNNNNNCTCC 4 cut(s) 666, 696, 748, 778
Bse118I RCCGGY 2 cut(s) 39, 53
Bse1I ACTGG 2 cut(s) 242, 1040
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 2 cut(s) 202, 1217
BseDI CCNNGG 2 cut(s) 249, 948
BseGI GGATG 2 cut(s) 30, 70
BseMII CTCAG 2 cut(s) 368, 1062
BseNI ACTGG 2 cut(s) 242, 1040
BseRI GAGGAG 4 cut(s) 401, 482, 512, 538
BseXI GCAGC 2 cut(s) 836, 1249
BsgI GTGCAG 1 cut(s) 1256
BshFI GGCC 1 cut(s) 1220
BshTI ACCGGT 1 cut(s) 53
BsiSI CCGG 8 cut(s) 40, 54, 189, 227, 251, 317, 340, 368
BslFI GGGAC 1 cut(s) 930
BsmAI GTCTC 1 cut(s) 355
BsmBI CGTCTC 1 cut(s) 355
BsmFI GGGAC 1 cut(s) 930
BsnI GGCC 1 cut(s) 1220
Bsp119I TTCGAA 1 cut(s) 1164
Bsp1286I GDGCHC 1 cut(s) 250
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 3 cut(s) 909, 1194, 1228
BspACI CCGC 2 cut(s) 331, 371
BspANI GGCC 1 cut(s) 1220
BspCNI CTCAG 2 cut(s) 369, 1063
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 366, 1038
BspPI GGATC 2 cut(s) 904, 1189
BspT104I TTCGAA 1 cut(s) 1164
BspTI CTTAAG 1 cut(s) 1249
BsrFI RCCGGY 2 cut(s) 39, 53
BsrI ACTGG 2 cut(s) 242, 1040
BssAI RCCGGY 2 cut(s) 39, 53
BssECI CCNNGG 2 cut(s) 249, 948
BssMI GATC 3 cut(s) 909, 1194, 1228
BssT1I CCWWGG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 202, 1217
Bst4CI ACNGT 1 cut(s) 1058
Bst6I CTCTTC 2 cut(s) 564, 1101
BstAFI CTTAAG 1 cut(s) 1249
BstBI TTCGAA 1 cut(s) 1164
BstC8I GCNNGC 2 cut(s) 41, 1084
BstDEI CTNAG 4 cut(s) 6, 377, 828, 1071
BstF5I GGATG 2 cut(s) 30, 70
BstKTI GATC 3 cut(s) 912, 1197, 1231
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 909, 1194, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 36, 211
BstNI CCWGG 2 cut(s) 202, 1217
BstPAI GACNNNNGTC 1 cut(s) 347
BstSCI CCNGG 4 cut(s) 187, 200, 249, 1215
BstV1I GCAGC 2 cut(s) 836, 1249
BstV2I GAAGAC 1 cut(s) 1005
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 1220
BtsCI GGATG 2 cut(s) 30, 70
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 746, 849, 1063, 1068
Cac8I GCNNGC 2 cut(s) 41, 1084
Cfr10I RCCGGY 2 cut(s) 39, 53
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 1 cut(s) 991
CspAI ACCGGT 1 cut(s) 53
CspCI CAANNNNNGTGG 4 cut(s) 688, 723, 1125, 1160
CviAII CATG 2 cut(s) 140, 917
CviQI GTAC 1 cut(s) 991
DdeI CTNAG 4 cut(s) 6, 377, 828, 1071
DpnI GATC 3 cut(s) 911, 1196, 1230
DpnII GATC 3 cut(s) 909, 1194, 1228
Eam1104I CTCTTC 2 cut(s) 564, 1101
EarI CTCTTC 2 cut(s) 564, 1101
Eco130I CCWWGG 1 cut(s) 948
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 770
EcoRI GAATTC 2 cut(s) 10, 868
EcoRII CCWGG 2 cut(s) 200, 1215
EcoT14I CCWWGG 1 cut(s) 948
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 948
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 2 cut(s) 143, 920
FaiI YATR 9 cut(s) 49, 141, 311, 918, 1034, 1079, 1155, 1286, 1288
FaqI GGGAC 1 cut(s) 930
FatI CATG 2 cut(s) 139, 916
Fnu4HI GCNGC 2 cut(s) 825, 1238
FokI GGATG 2 cut(s) 17, 57
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 825, 1238
FspBI CTAG 5 cut(s) 264, 624, 942, 1199, 1208
GluI GCNGC 2 cut(s) 825, 1238
HaeIII GGCC 1 cut(s) 1220
HapII CCGG 8 cut(s) 40, 54, 189, 227, 251, 317, 340, 368
Hin1II CATG 2 cut(s) 143, 920
HindIII AAGCTT 2 cut(s) 156, 1252
HpaII CCGG 8 cut(s) 40, 54, 189, 227, 251, 317, 340, 368
HphI GGTGA 6 cut(s) 253, 289, 484, 514, 562, 592
Hpy166II GTNNAC 2 cut(s) 746, 1213
Hpy188I TCNGA 8 cut(s) 66, 94, 768, 865, 934, 1022, 1126, 1276
Hpy188III TCNNGA 5 cut(s) 340, 383, 662, 694, 802
Hpy8I GTNNAC 2 cut(s) 746, 1213
Hpy99I CGWCG 1 cut(s) 763
HpyAV CCTTC 9 cut(s) 174, 180, 388, 508, 592, 621, 682, 719, 799
HpyCH4III ACNGT 1 cut(s) 1058
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 4 cut(s) 51, 287, 824, 1237
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 211
HpyF3I CTNAG 4 cut(s) 6, 377, 828, 1071
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 143, 920
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 3 cut(s) 909, 1194, 1228
LmnI GCTCC 3 cut(s) 319, 736, 1036
Lsp1109I GCAGC 2 cut(s) 836, 1249
LweI GCATC 2 cut(s) 39, 628
MaeI CTAG 5 cut(s) 264, 624, 942, 1199, 1208
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 3 cut(s) 56, 181, 259
MalI GATC 3 cut(s) 911, 1196, 1230
MboI GATC 3 cut(s) 909, 1194, 1228
MhlI GDGCHC 1 cut(s) 250
MluCI AATT 7 cut(s) 10, 715, 868, 1007, 1112, 1243, 1278
MlyI GAGTC 6 cut(s) 61, 89, 239, 388, 757, 1130
MmeI TCCRAC 3 cut(s) 89, 258, 937
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 39
MseI TTAA 8 cut(s) 450, 480, 555, 657, 719, 1044, 1242, 1250
MslI CAYNNNNRTG 2 cut(s) 333, 819
MspCI CTTAAG 1 cut(s) 1249
MspI CCGG 8 cut(s) 40, 54, 189, 227, 251, 317, 340, 368
MspR9I CCNGG 4 cut(s) 189, 202, 251, 1217
MvaI CCWGG 2 cut(s) 202, 1217
MwoI GCNNNNNNNGC 2 cut(s) 36, 211
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 189, 251
NdeII GATC 3 cut(s) 909, 1194, 1228
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 143, 920
NlaIV GGNNCC 2 cut(s) 366, 1038
NspV TTCGAA 1 cut(s) 1164
OliI CACNNNNGTG 1 cut(s) 333
PcsI WCGNNNNNNNCGW 1 cut(s) 764
PdiI GCCGGC 1 cut(s) 41
PfeI GAWTC 6 cut(s) 218, 254, 322, 665, 1023, 1161
PinAI ACCGGT 1 cut(s) 53
PkrI GCNGC 2 cut(s) 826, 1239
PleI GAGTC 6 cut(s) 61, 89, 238, 387, 757, 1129
PpsI GAGTC 6 cut(s) 61, 89, 238, 387, 757, 1129
PshAI GACNNNNGTC 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 200, 1215
PspGI CCWGG 2 cut(s) 200, 1215
PspN4I GGNNCC 2 cut(s) 366, 1038
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 1 cut(s) 992
RsaNI GTAC 1 cut(s) 991
RseI CAYNNNNRTG 2 cut(s) 333, 819
SaqAI TTAA 8 cut(s) 450, 480, 555, 657, 719, 1044, 1242, 1250
SatI GCNGC 2 cut(s) 825, 1238
Sau3AI GATC 3 cut(s) 909, 1194, 1228
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 6 cut(s) 61, 89, 239, 388, 757, 1130
ScrFI CCNGG 4 cut(s) 189, 202, 251, 1217
SduI GDGCHC 1 cut(s) 250
SfaNI GCATC 2 cut(s) 39, 628
SfuI TTCGAA 1 cut(s) 1164
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 333, 819
SmlI CTYRAG 1 cut(s) 1249
SmoI CTYRAG 1 cut(s) 1249
Sse9I AATT 7 cut(s) 10, 715, 868, 1007, 1112, 1243, 1278
SsiI CCGC 2 cut(s) 331, 371
SspI AATATT 1 cut(s) 938
SspMI CTAG 5 cut(s) 264, 624, 942, 1199, 1208
StyD4I CCNGG 4 cut(s) 187, 200, 249, 1215
StyI CCWWGG 1 cut(s) 948
TaaI ACNGT 1 cut(s) 1058
TaiI ACGT 1 cut(s) 63
TaqI TCGA 5 cut(s) 306, 650, 1149, 1164, 1185
TasI AATT 7 cut(s) 10, 715, 868, 1007, 1112, 1243, 1278
TfiI GAWTC 6 cut(s) 218, 254, 322, 665, 1023, 1161
Tru1I TTAA 8 cut(s) 450, 480, 555, 657, 719, 1044, 1242, 1250
Tru9I TTAA 8 cut(s) 450, 480, 555, 657, 719, 1044, 1242, 1250
TscAI CASTG 4 cut(s) 753, 849, 1063, 1075
TseI GCWGC 2 cut(s) 824, 1237
TspDTI ATGAA 6 cut(s) 156, 582, 933, 983, 1011, 1170
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 4 cut(s) 753, 849, 1063, 1075
Vha464I CTTAAG 1 cut(s) 1249
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 3 cut(s) 10, 868, 1278
XspI CTAG 5 cut(s) 264, 624, 942, 1199, 1208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.