Rorug03G0059600

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0002181
Physical Location & Seq
Forward (+)
4463068 .. 4466398
3331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0059600.1

Sequence Viewer

Length: 1284 bp
ATGGTGATCATCACAGAGGAAGAAGACAACCAAAAACGAGACCCCAAACCCTCACCAAGCACCAAACCAACCCACCGTTCAAAACAATCAAAACCCACTCCGTCGTCTCCGACTCCGCCACCATCAAAACCACCCCAAGAGGTTCAAAGCCCGTTCGCTTTCTGGTTCTACTTCACAATCACAGTCTCCATCATAACCTTCTTCTTCATCTCCTTCTCCTCTCTCTCCCCGCAAGACCCAAAGTCTTGGTTTTTAAGCTTACCCACATCGCTGCGTCAATACTACTCCAAGGGTCGCACTATAAAGGTCCAGACCCACCCGGACCAATCCGCCTTTGAAGTTTTCACAGCTGAGAAAGGCGTTACAGAATCGGAGAAGGTTATAATTGTTCATGGGTTGGGTCTGAGTTCGTATTCTTTTCGCAAAGTAATCGAAGCCCTAGGTTCCAGAGGGGTTCATGTGGTGGCGTTTGATTTACCTGGAAATGGGTTTTCGGATAAATCGACGGTGGAGATTGGGGAGAACCCAGGTGGGCTTCTTGGGAGGTTTTCGTTTGTTGTGAGTGAAATTCAAGAAAAGGGTTTGTTTTGGGCGTTTGATGAGATTGTGGCAACTGGGCAGGTGCCCTTTGAGGAGATAGAGGCTAGGGCATCGAAGCGAAAAGTAGTGAAGCCGATTGAGTTGGGCCCTGAGGAGGTTGGGAAGGTGTTGGGGCAAGTGATTGAGACAATGGGGCTGGCTCCTGTGCATTTGGTTTTGCATGATTCGGCTTTGGGGATGGTTTCGAATTGGGTTTTGGAGAATGTGCAGTCTGTTAGGAGTGTGACATTGATTGATACTGGGGCTAAATCGGCAGGGGCTTTACCTTTGTGGGTTTTGGAAGTGCCATTGGTTAGGGAGTTGGTGTTGGGGTTTTCGTATGCTCATGCATTGTTGATTAAGATGAGTTGCTCGAGCGGGGTTGATAGTGTGGATTTGAATGCGCATAGAGTTCTTTTGAAGGGGAGGGATGGGATGAAGGCGATTGTTGGAATGGGGAAGAAGTTGAATCGTAGCTTTGATATTGCAGAATGGGGTGGTTCGGATGGACTGAAAGGAGTGCCAATGCAATTGCTTTGGTCTGAACGTTGGTCTAAGGAATGGAGTGAAGAGGGGCGCCGAATTGCGAATGCACTTCCAAAGGCAAACTTTGTCTCCCATTCTGGTGGACGGTGGCCTCAGTGGAGCTTCTTTTTTGAGTCCAAGACAATTGCAGAACAAGATTATGATATTGCTTTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

427

Amino Acids

47.27

Weight (kDa)

6.82

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 127 - 280 9.3e-13 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 127 - 280 5.8e-07 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 383
AarI CACCTGC 1 cut(s) 610
Acc16I TGCGCA 1 cut(s) 984
Acc36I ACCTGC 1 cut(s) 610
AccB1I GGYRCC 2 cut(s) 622, 1155
AccBSI CCGCTC 1 cut(s) 957
AciI CCGC 4 cut(s) 116, 230, 330, 957
AclI AACGTT 1 cut(s) 1126
AcsI RAATTY 1 cut(s) 567
AcyI GRCGYC 1 cut(s) 1156
AfiI CCNNNNNNNGG 2 cut(s) 485, 694
AgsI TTSAA 7 cut(s) 81, 146, 338, 572, 979, 1000, 1048
AhdI GACNNNNNGTC 1 cut(s) 241
AjnI CCWGG 2 cut(s) 478, 526
AjuI GAANNNNNNNTTGG 4 cut(s) 61, 93, 779, 811
AluBI AGCT 4 cut(s) 258, 350, 1056, 1227
AluI AGCT 4 cut(s) 258, 350, 1056, 1227
Alw26I GTCTC 5 cut(s) 33, 111, 190, 719, 1198
Ama87I CYCGRG 1 cut(s) 952
AoxI GGCC 2 cut(s) 685, 1214
ApaI GGGCCC 1 cut(s) 689
ApeKI GCWGC 1 cut(s) 271
ApoI RAATTY 1 cut(s) 567
AspA2I CCTAGG 1 cut(s) 439
AspLEI GCGC 2 cut(s) 985, 1158
AspS9I GGNCC 4 cut(s) 307, 322, 685, 686
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 2 cut(s) 16, 45
AsuII TTCGAA 1 cut(s) 785
AvaI CYCGRG 1 cut(s) 952
AvaII GGWCC 2 cut(s) 307, 322
AvrII CCTAGG 1 cut(s) 439
AxyI CCTNAGG 1 cut(s) 690
BaeGI GKGCMC 2 cut(s) 627, 689
BanI GGYRCC 2 cut(s) 622, 1155
BanII GRGCYC 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 258
BccI CCATC 5 cut(s) 130, 197, 772, 1004, 1079
BcgI CGANNNNNNTGC 2 cut(s) 412, 446
BciT130I CCWGG 2 cut(s) 480, 528
BclI TGATCA 1 cut(s) 6
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 5 cut(s) 33, 111, 190, 719, 1198
BfaI CTAG 2 cut(s) 440, 645
BfoI RGCGCY 1 cut(s) 1159
BfuAI ACCTGC 1 cut(s) 610
BisI GCNGC 1 cut(s) 272
BlnI CCTAGG 1 cut(s) 439
BlsI GCNGC 1 cut(s) 273
Bme1390I CCNGG 3 cut(s) 320, 480, 528
Bme18I GGWCC 2 cut(s) 307, 322
BmeRI GACNNNNNGTC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 952
BmgT120I GGNCC 4 cut(s) 307, 322, 685, 686
BmiI GGNNCC 5 cut(s) 445, 624, 687, 741, 1157
BmrFI CCNGG 3 cut(s) 320, 480, 528
BmrI ACTGGG 2 cut(s) 624, 849
BmsI GCATC 1 cut(s) 659
BmuI ACTGGG 2 cut(s) 624, 849
BpiI GAAGAC 1 cut(s) 30
Bpu14I TTCGAA 1 cut(s) 785
BpuMI CCSGG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 1156
BsaI GGTCTC 1 cut(s) 33
BsaJI CCNNGG 3 cut(s) 288, 439, 526
BsaXI ACNNNNNCTCC 4 cut(s) 890, 920, 1178, 1208
Bsc4I CCNNNNNNNGG 2 cut(s) 485, 694
Bse1I ACTGG 2 cut(s) 619, 844
Bse21I CCTNAGG 1 cut(s) 690
BseBI CCWGG 2 cut(s) 480, 528
BseDI CCNNGG 3 cut(s) 288, 439, 526
BseGI GGATG 4 cut(s) 783, 1015, 1020, 1090
BseLI CCNNNNNNNGG 2 cut(s) 485, 694
BseMII CTCAG 4 cut(s) 342, 395, 681, 1232
BseNI ACTGG 2 cut(s) 619, 844
BseRI GAGGAG 3 cut(s) 208, 647, 707
BseSI GKGCMC 2 cut(s) 627, 689
BseXI GCAGC 1 cut(s) 258
BsgI GTGCAG 1 cut(s) 827
BshFI GGCC 2 cut(s) 687, 1216
BshNI GGYRCC 2 cut(s) 622, 1155
BsiHKCI CYCGRG 1 cut(s) 952
BsiSI CCGG 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 485, 694
BsmAI GTCTC 5 cut(s) 33, 111, 190, 719, 1198
BsmBI CGTCTC 1 cut(s) 111
BsmI GAATGC 2 cut(s) 985, 1174
BsnI GGCC 2 cut(s) 687, 1216
Bso31I GGTCTC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 952
Bsp119I TTCGAA 1 cut(s) 785
Bsp120I GGGCCC 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 627, 689
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 4 cut(s) 116, 230, 330, 957
BspANI GGCC 2 cut(s) 687, 1216
BspCNI CTCAG 4 cut(s) 343, 396, 682, 1231
BspLI GGNNCC 5 cut(s) 445, 624, 687, 741, 1157
BspMI ACCTGC 1 cut(s) 610
BspT104I TTCGAA 1 cut(s) 785
BspT107I GGYRCC 2 cut(s) 622, 1155
BspTNI GGTCTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 957
BsrI ACTGG 2 cut(s) 619, 844
BssECI CCNNGG 3 cut(s) 288, 439, 526
BssMI GATC 1 cut(s) 6
BssNI GRCGYC 1 cut(s) 1156
BssT1I CCWWGG 2 cut(s) 288, 439
Bst2UI CCWGG 2 cut(s) 480, 528
Bst4CI ACNGT 4 cut(s) 77, 184, 508, 1212
Bst6I CTCTTC 1 cut(s) 1143
BstACI GRCGYC 1 cut(s) 1156
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 1 cut(s) 738
BstDEI CTNAG 5 cut(s) 351, 404, 690, 1134, 1218
BstF5I GGATG 4 cut(s) 783, 1015, 1020, 1090
BstH2I RGCGCY 1 cut(s) 1159
BstHHI GCGC 2 cut(s) 985, 1158
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 5 cut(s) 33, 111, 190, 719, 1198
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 2 cut(s) 480, 528
BstSCI CCNGG 3 cut(s) 318, 478, 526
BstSLI GKGCMC 2 cut(s) 627, 689
BstV1I GCAGC 1 cut(s) 258
BstV2I GAAGAC 1 cut(s) 30
BstXI CCANNNNNNTGG 2 cut(s) 246, 1205
Bsu36I CCTNAGG 1 cut(s) 690
BsuRI GGCC 2 cut(s) 687, 1216
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 4 cut(s) 783, 1015, 1020, 1090
BtsIMutI CAGTG 1 cut(s) 1226
BveI ACCTGC 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 738
CfoI GCGC 2 cut(s) 985, 1158
Cfr13I GGNCC 4 cut(s) 307, 322, 685, 686
CseI GACGC 1 cut(s) 263
CviAII CATG 4 cut(s) 392, 458, 761, 926
DdeI CTNAG 5 cut(s) 351, 404, 690, 1134, 1218
DinI GGCGCC 1 cut(s) 1157
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DriI GACNNNNNGTC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 1143
Eam1105I GACNNNNNGTC 1 cut(s) 241
EarI CTCTTC 1 cut(s) 1143
EciI GGCGGA 2 cut(s) 105, 319
Eco130I CCWWGG 2 cut(s) 288, 439
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 307, 322
Eco81I CCTNAGG 1 cut(s) 690
Eco88I CYCGRG 1 cut(s) 952
EcoO109I RGGNCCY 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 478, 526
EcoT14I CCWWGG 2 cut(s) 288, 439
EcoT22I ATGCAT 1 cut(s) 931
EcoT38I GRGCYC 1 cut(s) 689
EgeI GGCGCC 1 cut(s) 1157
EheI GGCGCC 1 cut(s) 1157
ErhI CCWWGG 2 cut(s) 288, 439
Esp3I CGTCTC 1 cut(s) 111
FaeI CATG 4 cut(s) 395, 461, 764, 929
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FatI CATG 4 cut(s) 391, 457, 760, 925
FauI CCCGC 2 cut(s) 237, 950
FbaI TGATCA 1 cut(s) 6
Fnu4HI GCNGC 1 cut(s) 272
FokI GGATG 4 cut(s) 790, 1022, 1027, 1097
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 1 cut(s) 272
FspAI RTGCGCAY 1 cut(s) 984
FspBI CTAG 2 cut(s) 440, 645
FspI TGCGCA 1 cut(s) 984
GlaI GCGC 2 cut(s) 984, 1157
GluI GCNGC 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 1159
HaeIII GGCC 2 cut(s) 687, 1216
HapII CCGG 1 cut(s) 320
HgaI GACGC 1 cut(s) 263
HhaI GCGC 2 cut(s) 985, 1158
Hin1I GRCGYC 1 cut(s) 1156
Hin1II CATG 4 cut(s) 395, 461, 764, 929
Hin6I GCGC 2 cut(s) 983, 1156
HinP1I GCGC 2 cut(s) 983, 1156
HindIII AAGCTT 1 cut(s) 256
HinfI GANTC 5 cut(s) 112, 368, 764, 1048, 1238
HpaII CCGG 1 cut(s) 320
HphI GGTGA 2 cut(s) 16, 45
Hpy166II GTNNAC 1 cut(s) 1208
Hpy188I TCNGA 6 cut(s) 111, 373, 405, 496, 1084, 1123
Hpy188III TCNNGA 3 cut(s) 310, 447, 572
Hpy8I GTNNAC 1 cut(s) 1208
Hpy99I CGWCG 2 cut(s) 106, 508
HpyAV CCTTC 6 cut(s) 208, 223, 370, 697, 994, 1012
HpyCH4III ACNGT 4 cut(s) 77, 184, 508, 1212
HpyCH4IV ACGT 1 cut(s) 1126
HpyCH4V TGCA 8 cut(s) 748, 760, 808, 929, 1067, 1108, 1172, 1253
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 5 cut(s) 351, 404, 690, 1134, 1218
HpySE526I ACGT 1 cut(s) 1126
Hsp92I GRCGYC 1 cut(s) 1156
Hsp92II CATG 4 cut(s) 395, 461, 764, 929
HspAI GCGC 2 cut(s) 983, 1156
KasI GGCGCC 1 cut(s) 1155
Ksp22I TGATCA 1 cut(s) 6
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 2 cut(s) 745, 1224
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 659
MaeI CTAG 2 cut(s) 440, 645
MaeII ACGT 1 cut(s) 1126
MaeIII GTNAC 2 cut(s) 361, 823
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 957
MboI GATC 1 cut(s) 6
MboII GAAGA 6 cut(s) 32, 35, 193, 196, 1051, 1160
MfeI CAATTG 2 cut(s) 1109, 1248
MhlI GDGCHC 2 cut(s) 627, 689
MluCI AATT 6 cut(s) 384, 567, 787, 1109, 1161, 1248
Mly113I GGCGCC 1 cut(s) 1156
MlyI GAGTC 2 cut(s) 106, 1247
MmeI TCCRAC 2 cut(s) 134, 1009
Mph1103I ATGCAT 1 cut(s) 931
MseI TTAA 3 cut(s) 254, 939, 1282
MslI CAYNNNNRTG 1 cut(s) 1203
MspA1I CMGCKG 1 cut(s) 350
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 3 cut(s) 320, 480, 528
MunI CAATTG 2 cut(s) 1109, 1248
Mva1269I GAATGC 2 cut(s) 985, 1174
MvaI CCWGG 2 cut(s) 480, 528
MwoI GCNNNNNNNGC 1 cut(s) 851
NarI GGCGCC 1 cut(s) 1156
NciI CCSGG 1 cut(s) 320
NdeII GATC 1 cut(s) 6
NlaIII CATG 4 cut(s) 395, 461, 764, 929
NlaIV GGNNCC 5 cut(s) 445, 624, 687, 741, 1157
NmuCI GTSAC 1 cut(s) 823
NsbI TGCGCA 1 cut(s) 984
NsiI ATGCAT 1 cut(s) 931
NspV TTCGAA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 952
PaqCI CACCTGC 1 cut(s) 610
PcsI WCGNNNNNNNCGW 1 cut(s) 500
PctI GAATGC 2 cut(s) 985, 1174
PfeI GAWTC 3 cut(s) 368, 764, 1048
PkrI GCNGC 1 cut(s) 273
PleI GAGTC 2 cut(s) 106, 1246
PluTI GGCGCC 1 cut(s) 1159
PpsI GAGTC 2 cut(s) 106, 1246
PsiI TTATAA 1 cut(s) 383
Psp1406I AACGTT 1 cut(s) 1126
Psp6I CCWGG 2 cut(s) 478, 526
PspGI CCWGG 2 cut(s) 478, 526
PspN4I GGNNCC 5 cut(s) 445, 624, 687, 741, 1157
PspOMI GGGCCC 1 cut(s) 685
PspPI GGNCC 4 cut(s) 307, 322, 685, 686
PspXI VCTCGAGB 1 cut(s) 952
PvuII CAGCTG 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 1203
SaqAI TTAA 3 cut(s) 254, 939, 1282
SatI GCNGC 1 cut(s) 272
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 4 cut(s) 307, 322, 685, 686
SchI GAGTC 2 cut(s) 106, 1247
ScrFI CCNGG 3 cut(s) 320, 480, 528
SduI GDGCHC 2 cut(s) 627, 689
SfaNI GCATC 1 cut(s) 659
SfoI GGCGCC 1 cut(s) 1157
Sfr274I CTCGAG 1 cut(s) 952
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 2 cut(s) 307, 322
SlaI CTCGAG 1 cut(s) 952
SmiMI CAYNNNNRTG 1 cut(s) 1203
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
Sse9I AATT 6 cut(s) 384, 567, 787, 1109, 1161, 1248
SsiI CCGC 4 cut(s) 116, 230, 330, 957
SspDI GGCGCC 1 cut(s) 1155
SspMI CTAG 2 cut(s) 440, 645
StyD4I CCNGG 3 cut(s) 318, 478, 526
StyI CCWWGG 2 cut(s) 288, 439
TaaI ACNGT 4 cut(s) 77, 184, 508, 1212
TaiI ACGT 1 cut(s) 1129
TaqI TCGA 5 cut(s) 432, 503, 653, 785, 953
TasI AATT 6 cut(s) 384, 567, 787, 1109, 1161, 1248
TfiI GAWTC 3 cut(s) 368, 764, 1048
Tru1I TTAA 3 cut(s) 254, 939, 1282
Tru9I TTAA 3 cut(s) 254, 939, 1282
TscAI CASTG 1 cut(s) 1226
TseFI GTSAC 1 cut(s) 823
TseI GCWGC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 823
TspDTI ATGAA 4 cut(s) 196, 380, 446, 1031
TspGWI ACGGA 1 cut(s) 90
TspRI CASTG 1 cut(s) 1226
VpaK11BI GGWCC 2 cut(s) 307, 322
XapI RAATTY 1 cut(s) 567
XhoI CTCGAG 1 cut(s) 952
XmaJI CCTAGG 1 cut(s) 439
XspI CTAG 2 cut(s) 440, 645
Zsp2I ATGCAT 1 cut(s) 931
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.