FvH4_7g24590

Omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
18969246 .. 18972323
3078 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24590.t2

Sequence Viewer

Length: 1299 bp
ATGGCGAGTTGGGTCATCTCAGAATGTGGCCTCAAGCCTCTCCCTAGAGTCTACCCTCAAACCAGAAATGGCCTCACCTCAAAACCCATTAGGCCATTGCAACTCAAAAACAAGAGCCTTGGTTCTTCTTTGAGGGTGTCAAATGGGTTTAGAGGGCAGAGTTGGGCGCTCAATGTGAGTGCTCCATTGAATGTGGTGACTCTTGGGGAAGATAGGGTTGATCAAGATGGTGGGGAGTTTGACCCTGGTGCAGCTCCTCCGTTTAATTTGGGTGATATTCGGGCAGCAATTCCAAAGCATTGTTGGGTTAAGAATCCTTGGAAGTCTATGAGTTATGTTGTGAGGGATGTGGCTGTGGTTTTTGGCTTGGCGGCTGTGGCGGCTTACTTTAACAATTGGGCTGTTTGGCCTCTTTACTGGTTTGCTCAGAGCACCATGTTCTGGGCTCTCTTTGTTCTTGGCCATGATTGTGGTCATGGAAGCTTCTCTAATAACCCAAAGCTGAATAGTGTGGTGGGTCATCTTCTTCATTCTTCAATCCTTGTCCCATACCATGGATGGAGAATAAGTCACAGAACTCATCATCAGAACCATGGTCATGTCGAAAATGATGAGTCTTGGCATCCGTTAACTGAGAAAACCTTCAAAAGTTTGGATAAGGTTACTCAGATATTGAGGTTCGCCTTGCCTTTCCCTATGCTTGCTTACCCCTTTTATCTGTGGCTTAGAAGTCCAGGAAAGAAAGGTTCTCATTATAATCCGAGCAGCGACTTGTTTCTTCCAACTGAAAGGAAAGATATTATCACCTCCACTACCTGTTGGACTGCAATGGTTGCCCTGCTTATTGGTCTGAACTTTGTAATGGGTCCAATGCAAATGCTTAAGCTTTATGGAATTCCATACTGGGGGTTTGTCGTATGGTTGGACTTAGTGACTTACTTACATCACCATGGCCATGAAGACAAGCTTCCATGGTATCGTGGAAAGGAATGGAGTTATCTAAGAGGAGGGCTAACAACCCTTGATCGTGACTATGGACTGTTCAATAACATTCATCATGATATTGGTACCCATGTCATACATCACCTATTCCCTCAAATCCCACACTACAACTTAGTAGAAGCAACCGAGGCAGCTAAGCCGGTGTTTGGGAAGTACTACAGGGAGCCAAAGAAATCTGGGCCTCTCCCATTCCATTTATTGGGAGTCCTTGTAAAAAGCTTCAAGAAAGATCACTATGTAAGTGATACTGGGGATGTTGTATATTATCAAACTGATAAGAAAATCTCCGGATCTTAG

Protein Analysis

433

Amino Acids

49.17

Weight (kDa)

9.28

Isoelectric Point (pI)

29.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 125 6.9e-48 Domain of unknown function (DUF3474)
FA_desaturase PF00487 133 - 387 2.3e-30 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 756
Acc65I GGTACC 1 cut(s) 1067
AccB1I GGYRCC 1 cut(s) 1067
AccB7I CCANNNNNTGG 3 cut(s) 441, 554, 1201
AccI GTMKAC 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 1289
AciI CCGC 2 cut(s) 371, 380
AcoI YGGCCR 2 cut(s) 460, 952
AcsI RAATTY 1 cut(s) 894
AfaI GTAC 2 cut(s) 1069, 1157
AfiI CCNNNNNNNGG 5 cut(s) 441, 554, 905, 1148, 1201
AflII CTTAAG 1 cut(s) 881
AgsI TTSAA 5 cut(s) 190, 537, 646, 1045, 1225
AjnI CCWGG 2 cut(s) 244, 733
AluBI AGCT 7 cut(s) 254, 483, 502, 886, 967, 1136, 1221
AluI AGCT 7 cut(s) 254, 483, 502, 886, 967, 1136, 1221
Alw21I GWGCWC 2 cut(s) 184, 434
Aor13HI TCCGGA 1 cut(s) 1289
AoxI GGCC 7 cut(s) 28, 70, 92, 407, 460, 952, 1181
ApeKI GCWGC 4 cut(s) 251, 284, 765, 1133
ApoI RAATTY 1 cut(s) 894
Asp700I GAANNNNTTC 1 cut(s) 641
Asp718I GGTACC 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 169
AspS9I GGNCC 2 cut(s) 866, 1181
AsuHPI GGTGA 6 cut(s) 67, 208, 284, 796, 938, 1076
AvaII GGWCC 1 cut(s) 866
BaeI ACNNNNGTAYC 2 cut(s) 1059, 1092
BalI TGGCCA 2 cut(s) 462, 954
BanI GGYRCC 1 cut(s) 1067
BanII GRGCYC 1 cut(s) 448
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 2 cut(s) 184, 434
BbvI GCAGC 4 cut(s) 263, 296, 777, 1145
BccI CCATC 2 cut(s) 221, 552
BciT130I CCWGG 2 cut(s) 246, 735
BclI TGATCA 1 cut(s) 220
BfaI CTAG 1 cut(s) 45
BfmI CTRYAG 1 cut(s) 1159
BfoI RGCGCY 1 cut(s) 170
BfrI CTTAAG 1 cut(s) 881
BisI GCNGC 6 cut(s) 252, 285, 372, 381, 766, 1134
BlpI GCTNAGC 1 cut(s) 1137
BlsI GCNGC 6 cut(s) 253, 286, 373, 382, 767, 1135
BmcAI AGTACT 1 cut(s) 1157
Bme1390I CCNGG 2 cut(s) 246, 735
Bme18I GGWCC 1 cut(s) 866
BmgT120I GGNCC 2 cut(s) 866, 1181
BmiI GGNNCC 3 cut(s) 867, 1069, 1167
BmrFI CCNGG 2 cut(s) 246, 735
BmrI ACTGGG 2 cut(s) 913, 1260
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 2 cut(s) 913, 1260
BpiI GAAGAC 1 cut(s) 966
Bpu1102I GCTNAGC 1 cut(s) 1137
BpuEI CTTGAG 1 cut(s) 17
BsaJI CCNNGG 8 cut(s) 118, 244, 317, 553, 592, 949, 971, 1128
BsaWI WCCGGW 1 cut(s) 1289
BsaXI ACNNNNNCTCC 4 cut(s) 553, 583, 1197, 1227
Bsc4I CCNNNNNNNGG 5 cut(s) 441, 554, 905, 1148, 1201
Bse118I RCCGGY 1 cut(s) 1141
Bse1I ACTGG 3 cut(s) 422, 908, 1255
Bse3DI GCAATG 2 cut(s) 95, 834
BseAI TCCGGA 1 cut(s) 1289
BseBI CCWGG 2 cut(s) 246, 735
BseDI CCNNGG 8 cut(s) 118, 244, 317, 553, 592, 949, 971, 1128
BseGI GGATG 4 cut(s) 352, 563, 622, 1261
BseLI CCNNNNNNNGG 5 cut(s) 441, 554, 905, 1148, 1201
BseMI GCAATG 2 cut(s) 95, 834
BseMII CTCAG 4 cut(s) 33, 440, 624, 680
BseNI ACTGG 3 cut(s) 422, 908, 1255
BseRI GAGGAG 2 cut(s) 246, 1020
BseXI GCAGC 4 cut(s) 263, 296, 777, 1145
BsgI GTGCAG 1 cut(s) 270
BshFI GGCC 7 cut(s) 30, 72, 94, 409, 462, 954, 1183
BshNI GGYRCC 1 cut(s) 1067
BsiHKAI GWGCWC 2 cut(s) 184, 434
BsiSI CCGG 2 cut(s) 1142, 1290
BslFI GGGAC 1 cut(s) 530
BslI CCNNNNNNNGG 5 cut(s) 441, 554, 905, 1148, 1201
BsmFI GGGAC 1 cut(s) 530
BsnI GGCC 7 cut(s) 30, 72, 94, 409, 462, 954, 1183
Bsp1286I GDGCHC 3 cut(s) 184, 434, 448
Bsp13I TCCGGA 1 cut(s) 1289
Bsp143I GATC 4 cut(s) 220, 1024, 1231, 1292
Bsp1720I GCTNAGC 1 cut(s) 1137
Bsp19I CCATGG 4 cut(s) 553, 592, 949, 971
BspACI CCGC 2 cut(s) 371, 380
BspANI GGCC 7 cut(s) 30, 72, 94, 409, 462, 954, 1183
BspCNI CTCAG 4 cut(s) 32, 439, 625, 679
BspEI TCCGGA 1 cut(s) 1289
BspHI TCATGA 1 cut(s) 1057
BspLI GGNNCC 3 cut(s) 867, 1069, 1167
BspT107I GGYRCC 1 cut(s) 1067
BspTI CTTAAG 1 cut(s) 881
BsrDI GCAATG 2 cut(s) 95, 834
BsrFI RCCGGY 1 cut(s) 1141
BsrI ACTGG 3 cut(s) 422, 908, 1255
BssAI RCCGGY 1 cut(s) 1141
BssECI CCNNGG 8 cut(s) 118, 244, 317, 553, 592, 949, 971, 1128
BssMI GATC 4 cut(s) 220, 1024, 1231, 1292
BssT1I CCWWGG 6 cut(s) 118, 317, 553, 592, 949, 971
Bst2UI CCWGG 2 cut(s) 246, 735
Bst4CI ACNGT 1 cut(s) 1041
BstAFI CTTAAG 1 cut(s) 881
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 1 cut(s) 702
BstDSI CCRYGG 4 cut(s) 553, 592, 949, 971
BstF5I GGATG 4 cut(s) 352, 563, 622, 1261
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 1 cut(s) 169
BstKTI GATC 4 cut(s) 223, 1027, 1234, 1295
BstMBI GATC 4 cut(s) 220, 1024, 1231, 1292
BstMWI GCNNNNNNNGC 4 cut(s) 377, 380, 833, 1130
BstNI CCWGG 2 cut(s) 246, 735
BstSCI CCNGG 2 cut(s) 244, 733
BstSFI CTRYAG 1 cut(s) 1159
BstV1I GCAGC 4 cut(s) 263, 296, 777, 1145
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 1 cut(s) 1292
BstXI CCANNNNNNTGG 1 cut(s) 470
BstYI RGATCY 1 cut(s) 1292
BsuRI GGCC 7 cut(s) 30, 72, 94, 409, 462, 954, 1183
BtgI CCRYGG 4 cut(s) 553, 592, 949, 971
BtsCI GGATG 4 cut(s) 352, 563, 622, 1261
Cac8I GCNNGC 1 cut(s) 702
CciI TCATGA 1 cut(s) 1057
CfoI GCGC 1 cut(s) 169
Cfr10I RCCGGY 1 cut(s) 1141
Cfr13I GGNCC 2 cut(s) 866, 1181
Csp6I GTAC 2 cut(s) 1068, 1156
CviQI GTAC 2 cut(s) 1068, 1156
DpnI GATC 4 cut(s) 222, 1026, 1233, 1294
DpnII GATC 4 cut(s) 220, 1024, 1231, 1292
EaeI YGGCCR 2 cut(s) 460, 952
Eco130I CCWWGG 6 cut(s) 118, 317, 553, 592, 949, 971
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 866
EcoRI GAATTC 1 cut(s) 894
EcoRII CCWGG 2 cut(s) 244, 733
EcoT14I CCWWGG 6 cut(s) 118, 317, 553, 592, 949, 971
EcoT38I GRGCYC 1 cut(s) 448
ErhI CCWWGG 6 cut(s) 118, 317, 553, 592, 949, 971
FalI AAGNNNNNCTT 2 cut(s) 951, 983
FaqI GGGAC 1 cut(s) 530
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 6 cut(s) 252, 285, 372, 381, 766, 1134
FokI GGATG 4 cut(s) 359, 570, 609, 1268
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 6 cut(s) 252, 285, 372, 381, 766, 1134
FspBI CTAG 1 cut(s) 45
GlaI GCGC 1 cut(s) 168
GluI GCNGC 6 cut(s) 252, 285, 372, 381, 766, 1134
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 7 cut(s) 30, 72, 94, 409, 462, 954, 1183
HapII CCGG 2 cut(s) 1142, 1290
HhaI GCGC 1 cut(s) 169
Hin6I GCGC 1 cut(s) 167
HinP1I GCGC 1 cut(s) 167
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HindIII AAGCTT 4 cut(s) 481, 884, 965, 1219
HinfI GANTC 5 cut(s) 48, 199, 313, 614, 1206
HpaI GTTAAC 1 cut(s) 630
HpaII CCGG 2 cut(s) 1142, 1290
HphI GGTGA 6 cut(s) 67, 208, 284, 796, 938, 1076
Hpy166II GTNNAC 2 cut(s) 52, 630
Hpy188I TCNGA 6 cut(s) 22, 429, 588, 669, 762, 852
Hpy188III TCNNGA 5 cut(s) 224, 1028, 1058, 1225, 1290
Hpy8I GTNNAC 2 cut(s) 52, 630
HpyAV CCTTC 1 cut(s) 652
HpyCH4III ACNGT 1 cut(s) 1041
HpyCH4V TGCA 4 cut(s) 100, 251, 827, 874
HpyF10VI GCNNNNNNNGC 4 cut(s) 377, 380, 833, 1130
HspAI GCGC 1 cut(s) 167
Kpn2I TCCGGA 1 cut(s) 1289
KpnI GGTACC 1 cut(s) 1071
Ksp22I TGATCA 1 cut(s) 220
KspAI GTTAAC 1 cut(s) 630
Kzo9I GATC 4 cut(s) 220, 1024, 1231, 1292
LmnI GCTCC 3 cut(s) 187, 259, 1165
Lsp1109I GCAGC 4 cut(s) 263, 296, 777, 1145
LweI GCATC 1 cut(s) 631
MaeI CTAG 1 cut(s) 45
MaeIII GTNAC 5 cut(s) 196, 569, 661, 931, 1028
MalI GATC 4 cut(s) 222, 1026, 1233, 1294
MboI GATC 4 cut(s) 220, 1024, 1231, 1292
MboII GAAGA 7 cut(s) 117, 221, 515, 518, 525, 770, 971
MfeI CAATTG 1 cut(s) 394
MflI RGATCY 1 cut(s) 1292
MhlI GDGCHC 3 cut(s) 184, 434, 448
MlsI TGGCCA 2 cut(s) 462, 954
MluCI AATT 4 cut(s) 265, 288, 394, 894
MluNI TGGCCA 2 cut(s) 462, 954
MlyI GAGTC 4 cut(s) 57, 193, 623, 1215
MmeI TCCRAC 3 cut(s) 800, 806, 903
Mox20I TGGCCA 2 cut(s) 462, 954
MroI TCCGGA 1 cut(s) 1289
MroXI GAANNNNTTC 1 cut(s) 641
MscI TGGCCA 2 cut(s) 462, 954
MseI TTAA 5 cut(s) 264, 309, 390, 629, 882
MslI CAYNNNNRTG 4 cut(s) 468, 597, 948, 954
Msp20I TGGCCA 2 cut(s) 462, 954
MspCI CTTAAG 1 cut(s) 881
MspI CCGG 2 cut(s) 1142, 1290
MspR9I CCNGG 2 cut(s) 246, 735
MunI CAATTG 1 cut(s) 394
MvaI CCWGG 2 cut(s) 246, 735
MwoI GCNNNNNNNGC 4 cut(s) 377, 380, 833, 1130
NcoI CCATGG 4 cut(s) 553, 592, 949, 971
NdeII GATC 4 cut(s) 220, 1024, 1231, 1292
NlaIV GGNNCC 3 cut(s) 867, 1069, 1167
NmuCI GTSAC 4 cut(s) 196, 569, 931, 1028
PagI TCATGA 1 cut(s) 1057
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 1 cut(s) 313
PflMI CCANNNNNTGG 3 cut(s) 441, 554, 1201
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 6 cut(s) 253, 286, 373, 382, 767, 1135
PleI GAGTC 4 cut(s) 56, 193, 622, 1214
PpsI GAGTC 4 cut(s) 56, 193, 622, 1214
PsiI TTATAA 1 cut(s) 756
Psp6I CCWGG 2 cut(s) 244, 733
PspGI CCWGG 2 cut(s) 244, 733
PspN4I GGNNCC 3 cut(s) 867, 1069, 1167
PspPI GGNCC 2 cut(s) 866, 1181
PsuI RGATCY 1 cut(s) 1292
RsaI GTAC 2 cut(s) 1069, 1157
RsaNI GTAC 2 cut(s) 1068, 1156
RseI CAYNNNNRTG 4 cut(s) 468, 597, 948, 954
SaqAI TTAA 5 cut(s) 264, 309, 390, 629, 882
SatI GCNGC 6 cut(s) 252, 285, 372, 381, 766, 1134
Sau3AI GATC 4 cut(s) 220, 1024, 1231, 1292
Sau96I GGNCC 2 cut(s) 866, 1181
ScaI AGTACT 1 cut(s) 1157
SchI GAGTC 4 cut(s) 57, 193, 623, 1215
ScrFI CCNGG 2 cut(s) 246, 735
SduI GDGCHC 3 cut(s) 184, 434, 448
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 1 cut(s) 1159
SinI GGWCC 1 cut(s) 866
SmiMI CAYNNNNRTG 4 cut(s) 468, 597, 948, 954
SmlI CTYRAG 2 cut(s) 32, 881
SmoI CTYRAG 2 cut(s) 32, 881
Sse9I AATT 4 cut(s) 265, 288, 394, 894
SsiI CCGC 2 cut(s) 371, 380
SspMI CTAG 1 cut(s) 45
StyD4I CCNGG 2 cut(s) 244, 733
StyI CCWWGG 6 cut(s) 118, 317, 553, 592, 949, 971
TaaI ACNGT 1 cut(s) 1041
TaqI TCGA 1 cut(s) 603
TasI AATT 4 cut(s) 265, 288, 394, 894
TatI WGTACW 1 cut(s) 1155
TauI GCSGC 2 cut(s) 374, 383
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 5 cut(s) 264, 309, 390, 629, 882
Tru9I TTAA 5 cut(s) 264, 309, 390, 629, 882
TseFI GTSAC 4 cut(s) 196, 569, 931, 1028
TseI GCWGC 4 cut(s) 251, 284, 765, 1133
Tsp45I GTSAC 4 cut(s) 196, 569, 931, 1028
TspDTI ATGAA 3 cut(s) 518, 972, 1043
TspGWI ACGGA 2 cut(s) 249, 615
Van91I CCANNNNNTGG 3 cut(s) 441, 554, 1201
Vha464I CTTAAG 1 cut(s) 881
VpaK11BI GGWCC 1 cut(s) 866
XapI RAATTY 1 cut(s) 894
XcmI CCANNNNNNNNNTGG 2 cut(s) 300, 555
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 1157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.