Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005656.1

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Reverse (-)

29623 .. 31928

Gene Structure 2306 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005656.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

atggcgagttgggtcatctcagaatgtggcctaaagcctctccctagaatctaccctcaaaccagaaatggcctgacctcaaaacccattaggccattgctgctcagcaaaagcaagaatcttggttctgctttgaggctctcaaatgggtttagagggcagagttgggcactcaatgttagtgctccactgaatgtggtaactcttggagaagatagtgtaaatggggttgatcaagatggtggggagttcgaccctggtgcagctcctccgtttaatttgggtgatattcgggcagcaattccgaagcattgttgggttaagaatccttggaagtctatgagttatgttgtgagggatgtggctgtggtttttggcttggcggctgtggcggcttactttaacaattgggctgtttggcctctttactggtttgctcagagcaccatgttctgggctctctttgttcttggccatgattgtggtcatggaagtttctctaacaacccaaagctgaatagtgtggtgggtcatcttcttcattcttcaatccttgtcccataccatggatggagaataagtcatagaactcatcatcagaaccatggtcatgtcgaaaatgatgagtcttggcatccgttaactgagaaaactttcaaaagtttggataaggttactcagatattgaggtttgccttgcctttccctatgctcgcttaccccttttatctgtggagtagaagtccaggaaagaaaggttctcattataatccgaacagcgatttgtttcttccaaatgaaaggaaagatattattacctccactacctgttggactgcaatggttgccgtgcttgttggtctgtcctttataatgggtccaatccaaatgcttaagctttatggagttccatactgggggttcgtcatatggttggacttggtgacttacttgcatcaccatggccatgaggacaagcttccatggtatcgtggaaaggggttcgtcatatggttggacttggtgacttacttgcatcaccatggccatgaggacaagcttccatggtatcgtggaaaggaatggagttatctaagaggagggctgacaacccttgatcgtgactatggactgatcaataacatccatcatgatattggcactcatgtcatacatcacctattccctcaaatcccacactacaacttagtggaagcaacggaggcagccaagcctgtgcttgggaagtactacagggagccaaagaaatccgggcctctcccgttccatttattgggagtccttgtaaaaagcttcaagaaggatcactatgtaagtgatactggggatgttgtatattatcaaattgatgagaaactctccggatcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031090 GO:0031967 GO:0031975 GO:0032787 GO:0042170 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

463

Amino Acids

52.65

Weight (kDa)

9.05

Isoelectric Point (pI)

26.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	768, 872
AccB7I	CCANNNNNTGG	3 cut(s)	453, 566, 1294
AccIII	TCCGGA	1 cut(s)	1382
AciI	CCGC	2 cut(s)	383, 392
AclWI	GGATC	1 cut(s)	1332
AcoI	YGGCCR	3 cut(s)	472, 964, 1045
AfaI	GTAC	1 cut(s)	1250
AfiI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1241, 1294
AflII	CTTAAG	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	549, 658, 1318
AjnI	CCWGG	2 cut(s)	256, 745
AluBI	AGCT	6 cut(s)	266, 514, 898, 979, 1060, 1314
AluI	AGCT	6 cut(s)	266, 514, 898, 979, 1060, 1314
Alw21I	GWGCWC	2 cut(s)	187, 446
AlwI	GGATC	1 cut(s)	1332
Aor13HI	TCCGGA	1 cut(s)	1382
AoxI	GGCC	8 cut(s)	28, 70, 92, 419, 472, 964, 1045, 1274
ApeKI	GCWGC	4 cut(s)	100, 263, 296, 1226
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	2 cut(s)	878, 1274
AsuC2I	CCSGG	1 cut(s)	1273
AsuHPI	GGTGA	6 cut(s)	296, 950, 955, 1031, 1036, 1169
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	172
BalI	TGGCCA	3 cut(s)	474, 966, 1047
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	187, 446
BbvI	GCAGC	4 cut(s)	87, 275, 308, 1238
BccI	CCATC	3 cut(s)	233, 564, 1155
BceAI	ACGGC	1 cut(s)	833
BcgI	CGANNNNNNTGC	2 cut(s)	242, 276
BciT130I	CCWGG	2 cut(s)	258, 747
BclI	TGATCA	2 cut(s)	232, 1134
BcnI	CCSGG	1 cut(s)	1273
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	1 cut(s)	1252
BfrI	CTTAAG	1 cut(s)	893
BisI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1227
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	6 cut(s)	102, 265, 298, 385, 394, 1228
BmcAI	AGTACT	1 cut(s)	1250
Bme1390I	CCNGG	3 cut(s)	258, 747, 1273
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	2 cut(s)	878, 1274
BmiI	GGNNCC	2 cut(s)	879, 1260
BmrFI	CCNGG	3 cut(s)	258, 747, 1273
BmrI	ACTGGG	2 cut(s)	925, 1353
BmsI	GCATC	3 cut(s)	643, 964, 1045
BmuI	ACTGGG	2 cut(s)	925, 1353
BplI	GAGNNNNNCTC	1 cut(s)	1364
Bpu1102I	GCTNAGC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	1273
BsaJI	CCNNGG	8 cut(s)	256, 329, 565, 604, 961, 983, 1042, 1064
BsaWI	WCCGGW	1 cut(s)	1382
BsaXI	ACNNNNNCTCC	6 cut(s)	565, 595, 727, 757, 1290, 1320
Bsc4I	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1241, 1294
Bse1I	ACTGG	3 cut(s)	434, 920, 1348
Bse3DI	GCAATG	2 cut(s)	95, 846
BseAI	TCCGGA	1 cut(s)	1382
BseBI	CCWGG	2 cut(s)	258, 747
BseDI	CCNNGG	8 cut(s)	256, 329, 565, 604, 961, 983, 1042, 1064
BseGI	GGATG	5 cut(s)	364, 575, 634, 1143, 1354
BseLI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1241, 1294
BseMI	GCAATG	2 cut(s)	95, 846
BseMII	CTCAG	5 cut(s)	33, 118, 452, 636, 692
BseNI	ACTGG	3 cut(s)	434, 920, 1348
BseRI	GAGGAG	2 cut(s)	258, 1113
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	4 cut(s)	87, 275, 308, 1238
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	8 cut(s)	30, 72, 94, 421, 474, 966, 1047, 1276
BsiHKAI	GWGCWC	2 cut(s)	187, 446
BsiSI	CCGG	2 cut(s)	1272, 1383
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	5 cut(s)	453, 566, 917, 1241, 1294
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	8 cut(s)	30, 72, 94, 421, 474, 966, 1047, 1276
Bsp1286I	GDGCHC	4 cut(s)	172, 187, 446, 460
Bsp13I	TCCGGA	1 cut(s)	1382
Bsp143I	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	6 cut(s)	565, 604, 961, 983, 1042, 1064
BspACI	CCGC	2 cut(s)	383, 392
BspANI	GGCC	8 cut(s)	30, 72, 94, 421, 474, 966, 1047, 1276
BspCNI	CTCAG	5 cut(s)	32, 117, 451, 637, 691
BspEI	TCCGGA	1 cut(s)	1382
BspHI	TCATGA	1 cut(s)	1150
BspLI	GGNNCC	2 cut(s)	879, 1260
BspPI	GGATC	1 cut(s)	1332
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	95, 846
BsrI	ACTGG	3 cut(s)	434, 920, 1348
BssECI	CCNNGG	8 cut(s)	256, 329, 565, 604, 961, 983, 1042, 1064
BssMI	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
BssT1I	CCWWGG	7 cut(s)	329, 565, 604, 961, 983, 1042, 1064
Bst2UI	CCWGG	2 cut(s)	258, 747
BstAFI	CTTAAG	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1094, 1207, 1389
BstDSI	CCRYGG	6 cut(s)	565, 604, 961, 983, 1042, 1064
BstF5I	GGATG	5 cut(s)	364, 575, 634, 1143, 1354
BstKTI	GATC	5 cut(s)	235, 1120, 1137, 1327, 1388
BstMBI	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
BstMWI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1223
BstNI	CCWGG	2 cut(s)	258, 747
BstSCI	CCNGG	3 cut(s)	256, 745, 1271
BstSFI	CTRYAG	1 cut(s)	1252
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	4 cut(s)	87, 275, 308, 1238
BstX2I	RGATCY	1 cut(s)	1385
BstXI	CCANNNNNNTGG	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	1385
BsuRI	GGCC	8 cut(s)	30, 72, 94, 421, 474, 966, 1047, 1276
BtgI	CCRYGG	6 cut(s)	565, 604, 961, 983, 1042, 1064
BtsCI	GGATG	5 cut(s)	364, 575, 634, 1143, 1354
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	714
CciI	TCATGA	1 cut(s)	1150
Cfr13I	GGNCC	2 cut(s)	878, 1274
Csp6I	GTAC	1 cut(s)	1249
CviQI	GTAC	1 cut(s)	1249
DdeI	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1094, 1207, 1389
DpnI	GATC	5 cut(s)	234, 1119, 1136, 1326, 1387
DpnII	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
EaeI	YGGCCR	3 cut(s)	472, 964, 1045
Eco130I	CCWWGG	7 cut(s)	329, 565, 604, 961, 983, 1042, 1064
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	256, 745
EcoT14I	CCWWGG	7 cut(s)	329, 565, 604, 961, 983, 1042, 1064
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	7 cut(s)	329, 565, 604, 961, 983, 1042, 1064
FaqI	GGGAC	1 cut(s)	542
FauNDI	CATATG	2 cut(s)	929, 1010
FbaI	TGATCA	2 cut(s)	232, 1134
Fnu4HI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1227
FokI	GGATG	5 cut(s)	371, 582, 621, 1130, 1361
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1227
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1227
HaeIII	GGCC	8 cut(s)	30, 72, 94, 421, 474, 966, 1047, 1276
HapII	CCGG	2 cut(s)	1272, 1383
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	4 cut(s)	896, 977, 1058, 1312
HinfI	GANTC	5 cut(s)	48, 118, 325, 626, 1299
HpaI	GTTAAC	1 cut(s)	642
HpaII	CCGG	2 cut(s)	1272, 1383
HphI	GGTGA	6 cut(s)	296, 950, 955, 1031, 1036, 1169
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	6 cut(s)	22, 306, 441, 600, 681, 774
Hpy188III	TCNNGA	5 cut(s)	236, 1121, 1151, 1318, 1383
Hpy8I	GTNNAC	1 cut(s)	642
HpyAV	CCTTC	1 cut(s)	1315
HpyCH4V	TGCA	4 cut(s)	263, 839, 955, 1036
HpyF10VI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1223
HpyF3I	CTNAG	8 cut(s)	19, 104, 438, 645, 678, 1094, 1207, 1389
Kpn2I	TCCGGA	1 cut(s)	1382
Ksp22I	TGATCA	2 cut(s)	232, 1134
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
LmnI	GCTCC	3 cut(s)	190, 271, 1258
Lsp1109I	GCAGC	4 cut(s)	87, 275, 308, 1238
LweI	GCATC	3 cut(s)	643, 964, 1045
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	5 cut(s)	199, 673, 943, 1024, 1121
MalI	GATC	5 cut(s)	234, 1119, 1136, 1326, 1387
MboI	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
MboII	GAAGA	5 cut(s)	224, 527, 530, 537, 782
MfeI	CAATTG	1 cut(s)	406
MflI	RGATCY	1 cut(s)	1385
MhlI	GDGCHC	4 cut(s)	172, 187, 446, 460
MlsI	TGGCCA	3 cut(s)	474, 966, 1047
MluCI	AATT	4 cut(s)	277, 300, 406, 1365
MluNI	TGGCCA	3 cut(s)	474, 966, 1047
MlyI	GAGTC	2 cut(s)	635, 1308
MmeI	TCCRAC	3 cut(s)	812, 915, 996
Mox20I	TGGCCA	3 cut(s)	474, 966, 1047
MroI	TCCGGA	1 cut(s)	1382
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	3 cut(s)	474, 966, 1047
MseI	TTAA	5 cut(s)	276, 321, 402, 641, 894
MslI	CAYNNNNRTG	6 cut(s)	480, 609, 960, 966, 1041, 1047
Msp20I	TGGCCA	3 cut(s)	474, 966, 1047
MspCI	CTTAAG	1 cut(s)	893
MspI	CCGG	2 cut(s)	1272, 1383
MspR9I	CCNGG	3 cut(s)	258, 747, 1273
MunI	CAATTG	1 cut(s)	406
MvaI	CCWGG	2 cut(s)	258, 747
MwoI	GCNNNNNNNGC	5 cut(s)	100, 389, 392, 845, 1223
NciI	CCSGG	1 cut(s)	1273
NcoI	CCATGG	6 cut(s)	565, 604, 961, 983, 1042, 1064
NdeI	CATATG	2 cut(s)	929, 1010
NdeII	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
NlaIV	GGNNCC	2 cut(s)	879, 1260
NmuCI	GTSAC	3 cut(s)	943, 1024, 1121
PagI	TCATGA	1 cut(s)	1150
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	48, 118, 325
PflMI	CCANNNNNTGG	3 cut(s)	453, 566, 1294
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	6 cut(s)	102, 265, 298, 385, 394, 1228
PleI	GAGTC	2 cut(s)	634, 1307
PpsI	GAGTC	2 cut(s)	634, 1307
PsiI	TTATAA	2 cut(s)	768, 872
Psp6I	CCWGG	2 cut(s)	256, 745
PspGI	CCWGG	2 cut(s)	256, 745
PspN4I	GGNNCC	2 cut(s)	879, 1260
PspPI	GGNCC	2 cut(s)	878, 1274
PsuI	RGATCY	1 cut(s)	1385
RsaI	GTAC	1 cut(s)	1250
RsaNI	GTAC	1 cut(s)	1249
RseI	CAYNNNNRTG	6 cut(s)	480, 609, 960, 966, 1041, 1047
SaqAI	TTAA	5 cut(s)	276, 321, 402, 641, 894
SatI	GCNGC	6 cut(s)	101, 264, 297, 384, 393, 1227
Sau3AI	GATC	5 cut(s)	232, 1117, 1134, 1324, 1385
Sau96I	GGNCC	2 cut(s)	878, 1274
ScaI	AGTACT	1 cut(s)	1250
SchI	GAGTC	2 cut(s)	635, 1308
ScrFI	CCNGG	3 cut(s)	258, 747, 1273
SduI	GDGCHC	4 cut(s)	172, 187, 446, 460
SfaNI	GCATC	3 cut(s)	643, 964, 1045
SfcI	CTRYAG	1 cut(s)	1252
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	6 cut(s)	480, 609, 960, 966, 1041, 1047
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	4 cut(s)	277, 300, 406, 1365
SsiI	CCGC	2 cut(s)	383, 392
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	256, 745, 1271
StyI	CCWWGG	7 cut(s)	329, 565, 604, 961, 983, 1042, 1064
TaqI	TCGA	2 cut(s)	252, 615
TasI	AATT	4 cut(s)	277, 300, 406, 1365
TatI	WGTACW	1 cut(s)	1248
TauI	GCSGC	2 cut(s)	386, 395
TfiI	GAWTC	3 cut(s)	48, 118, 325
Tru1I	TTAA	5 cut(s)	276, 321, 402, 641, 894
Tru9I	TTAA	5 cut(s)	276, 321, 402, 641, 894
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	3 cut(s)	943, 1024, 1121
TseI	GCWGC	4 cut(s)	100, 263, 296, 1226
Tsp45I	GTSAC	3 cut(s)	943, 1024, 1121
TspDTI	ATGAA	2 cut(s)	530, 813
TspGWI	ACGGA	3 cut(s)	261, 627, 1235
TspRI	CASTG	1 cut(s)	195
Van91I	CCANNNNNTGG	3 cut(s)	453, 566, 1294
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	2 cut(s)	567, 1154
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	1 cut(s)	45
ZrmI	AGTACT	1 cut(s)	1250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.