Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Forward (+)

10071415 .. 10074792

Gene Structure 3378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG117800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCGAGTTGGGTCCTCTCAGAATGTGGCCTAAGGCCTCTCCCCCAGGTTTCACCGAGACCCAGAACCAGAATCGCCGCAAACCCAATAAAGCTTCCGACTTTGCAGAAGAACAACTTCGCAGATCTTGGATTCGGGTCGACCGGAATTTCAAGTGGGCGCTTTAGAAGGTGGGGAGTGAAGGTGAGTGCCCCATTGAAAGTTGCTTCTACAGAAGAAGATGAGGCAGAGAGAATGAGAGTCAATGGCGTTAATGGAGATGAAGAAGAGATTGAATTCGATCCGGGCTCACCTCCACCGTTCAAATTGGGTGATGTTAGAGCGGCAATCCCAAAGCACTGTTGGGTTAAGGACCCATGGAGGTCCATGAGCTATGTGGTTAGGGACGTGGTGGTGGTTTTTGGGTTGGCTGCGGCTGCGGTTTATATGAACAAGTGGTATGTTTGGCCTCTGTATTGGGTTGCTCAGGGGACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGACATGGAAGCTTTTCGAATAATCCAAAGCTAAATAGTGTGGTTGGACATCTATTGCATTCTTCCATACTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCACCATCAAAACCATGGACATGTTGAGAATGATGAATCATGGCATCCGTTGTCCGAGAGAATTTACAGAACTTTGGATAAAACAACAAAAATGTTGCGGTTCACTTTGCCTTTTCCCTTGCTTGCATACCCTTTCTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCATTTTGAGCCAAGCAGCGACCTCTTTGTCCCCAATGAGAAGAAAGATGTGATCACTTCCACTGTATGTTGGATAGCCATGGCTGCTTTGCTTGTGGGATTATCATTTGTGATTGGTCCTATTCAAATGCTTAAGCTCTATGGAATTCCCTACTGGGTAAATTCTACATCTTTAATTTCATATTGGTTTACACTCTACTCTACAAGTAGGATTGCTTTTACCAATCCAATCAAAGTAGGACTCTGTTTCAATGTTAGGTGTTTGTCATGTACTAAACTACTAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

359

Amino Acids

40.66

Weight (kDa)

9.34

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	1 - 138	2.9e-55	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	146 - 320	6.1e-18	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	815
AccB7I	CCANNNNNTGG	1 cut(s)	480
AccBSI	CCGCTC	1 cut(s)	323
AccI	GTMKAC	1 cut(s)	140
AciI	CCGC	5 cut(s)	78, 323, 413, 419, 715
AclWI	GGATC	1 cut(s)	275
AcsI	RAATTY	5 cut(s)	147, 275, 678, 933, 949
AfaI	GTAC	2 cut(s)	585, 1060
AfiI	CCNNNNNNNGG	2 cut(s)	480, 593
AflII	CTTAAG	1 cut(s)	920
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	6 cut(s)	153, 199, 275, 304, 914, 1039
AjiI	CACGTC	1 cut(s)	388
AjnI	CCWGG	2 cut(s)	45, 772
AluBI	AGCT	5 cut(s)	94, 372, 522, 541, 925
AluI	AGCT	5 cut(s)	94, 372, 522, 541, 925
Alw26I	GTCTC	1 cut(s)	52
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	3 cut(s)	28, 35, 446
ApeKI	GCWGC	4 cut(s)	410, 416, 804, 872
ApoI	RAATTY	5 cut(s)	147, 275, 678, 933, 949
Asp700I	GAANNNNTTC	2 cut(s)	116, 523
AspLEI	GCGC	1 cut(s)	162
AspS9I	GGNCC	5 cut(s)	13, 352, 363, 471, 905
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	5 cut(s)	45, 196, 282, 323, 611
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	5 cut(s)	13, 352, 363, 471, 905
AxyI	CCTNAGG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	193
BanII	GRGCYC	2 cut(s)	290, 487
BbvI	GCAGC	4 cut(s)	397, 403, 816, 859
BccI	CCATC	2 cut(s)	591, 630
BciT130I	CCWGG	2 cut(s)	47, 774
BclI	TGATCA	1 cut(s)	840
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	163
BfrI	CTTAAG	1 cut(s)	920
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	7 cut(s)	78, 324, 411, 414, 417, 805, 873
BlsI	GCNGC	7 cut(s)	79, 325, 412, 415, 418, 806, 874
Bme1390I	CCNGG	3 cut(s)	47, 285, 774
Bme18I	GGWCC	5 cut(s)	13, 352, 363, 471, 905
BmgBI	CACGTC	1 cut(s)	388
BmgT120I	GGNCC	5 cut(s)	13, 352, 363, 471, 905
BmiI	GGNNCC	3 cut(s)	14, 354, 472
BmrFI	CCNGG	3 cut(s)	47, 285, 774
BmrI	ACTGGG	1 cut(s)	952
BmsI	GCATC	1 cut(s)	670
BmuI	ACTGGG	1 cut(s)	952
Bpu10I	CCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	527
BpuMI	CCSGG	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	4 cut(s)	45, 356, 631, 867
BsaWI	WCCGGW	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 593
Bse1I	ACTGG	2 cut(s)	787, 947
Bse21I	CCTNAGG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	47, 774
BseDI	CCNNGG	4 cut(s)	45, 356, 631, 867
BseGI	GGATG	2 cut(s)	602, 661
BseLI	CCNNNNNNNGG	2 cut(s)	480, 593
BseMII	CTCAG	2 cut(s)	33, 479
BseNI	ACTGG	2 cut(s)	787, 947
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	4 cut(s)	397, 403, 816, 859
Bsh1285I	CGRYCG	1 cut(s)	144
BshFI	GGCC	3 cut(s)	30, 37, 448
BsiEI	CGRYCG	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	144, 284
BslFI	GGGAC	3 cut(s)	398, 484, 803
BslI	CCNNNNNNNGG	2 cut(s)	480, 593
BsmAI	GTCTC	1 cut(s)	52
BsmFI	GGGAC	3 cut(s)	398, 484, 803
BsmI	GAATGC	1 cut(s)	568
BsnI	GGCC	3 cut(s)	30, 37, 448
Bso31I	GGTCTC	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	527
Bsp1286I	GDGCHC	3 cut(s)	193, 290, 487
Bsp143I	GATC	3 cut(s)	124, 280, 840
Bsp19I	CCATGG	3 cut(s)	356, 631, 867
BspACI	CCGC	5 cut(s)	78, 323, 413, 419, 715
BspANI	GGCC	3 cut(s)	30, 37, 448
BspCNI	CTCAG	2 cut(s)	32, 478
BspHI	TCATGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	14, 354, 472
BspPI	GGATC	1 cut(s)	275
BspT104I	TTCGAA	1 cut(s)	527
BspTI	CTTAAG	1 cut(s)	920
BspTNI	GGTCTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	323
BsrI	ACTGG	2 cut(s)	787, 947
BssECI	CCNNGG	4 cut(s)	45, 356, 631, 867
BssMI	GATC	3 cut(s)	124, 280, 840
BssT1I	CCWWGG	3 cut(s)	356, 631, 867
Bst2UI	CCWGG	2 cut(s)	47, 774
Bst4CI	ACNGT	3 cut(s)	300, 341, 853
Bst6I	CTCTTC	1 cut(s)	261
BstAFI	CTTAAG	1 cut(s)	920
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	3 cut(s)	19, 32, 465
BstDSI	CCRYGG	3 cut(s)	356, 631, 867
BstF5I	GGATG	2 cut(s)	602, 661
BstH2I	RGCGCY	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	162
BstKTI	GATC	3 cut(s)	127, 283, 843
BstMAI	GTCTC	1 cut(s)	52
BstMBI	GATC	3 cut(s)	124, 280, 840
BstMCI	CGRYCG	1 cut(s)	144
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 872
BstNI	CCWGG	2 cut(s)	47, 774
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	45, 283, 772
BstSFI	CTRYAG	1 cut(s)	210
BstSLI	GKGCMC	1 cut(s)	193
BstV1I	GCAGC	4 cut(s)	397, 403, 816, 859
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
Bsu36I	CCTNAGG	1 cut(s)	32
BsuRI	GGCC	3 cut(s)	30, 37, 448
BtgI	CCRYGG	3 cut(s)	356, 631, 867
BtrI	CACGTC	1 cut(s)	388
BtsCI	GGATG	2 cut(s)	602, 661
BtsIMutI	CAGTG	2 cut(s)	337, 849
Cac8I	GCNNGC	1 cut(s)	741
CciI	TCATGA	1 cut(s)	502
CfoI	GCGC	1 cut(s)	162
Cfr13I	GGNCC	5 cut(s)	13, 352, 363, 471, 905
Csp6I	GTAC	2 cut(s)	584, 1059
CviQI	GTAC	2 cut(s)	584, 1059
DdeI	CTNAG	3 cut(s)	19, 32, 465
DpnI	GATC	3 cut(s)	126, 282, 842
DpnII	GATC	3 cut(s)	124, 280, 840
DrdI	GACNNNNNNGTC	1 cut(s)	815
DseDI	GACNNNNNNGTC	1 cut(s)	815
Eam1104I	CTCTTC	1 cut(s)	261
EarI	CTCTTC	1 cut(s)	261
Eco130I	CCWWGG	3 cut(s)	356, 631, 867
Eco147I	AGGCCT	1 cut(s)	37
Eco24I	GRGCYC	2 cut(s)	290, 487
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	5 cut(s)	13, 352, 363, 471, 905
Eco81I	CCTNAGG	1 cut(s)	32
EcoO109I	RGGNCCY	2 cut(s)	13, 352
EcoRI	GAATTC	2 cut(s)	275, 933
EcoRII	CCWGG	2 cut(s)	45, 772
EcoT14I	CCWWGG	3 cut(s)	356, 631, 867
EcoT38I	GRGCYC	2 cut(s)	290, 487
ErhI	CCWWGG	3 cut(s)	356, 631, 867
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	3 cut(s)	398, 484, 803
FbaI	TGATCA	1 cut(s)	840
FblI	GTMKAC	1 cut(s)	140
Fnu4HI	GCNGC	7 cut(s)	78, 324, 411, 414, 417, 805, 873
FokI	GGATG	2 cut(s)	609, 648
FriOI	GRGCYC	2 cut(s)	290, 487
Fsp4HI	GCNGC	7 cut(s)	78, 324, 411, 414, 417, 805, 873
GlaI	GCGC	1 cut(s)	161
GluI	GCNGC	7 cut(s)	78, 324, 411, 414, 417, 805, 873
HaeII	RGCGCY	1 cut(s)	163
HaeIII	GGCC	3 cut(s)	30, 37, 448
HapII	CCGG	2 cut(s)	144, 284
HhaI	GCGC	1 cut(s)	162
Hin6I	GCGC	1 cut(s)	160
HinP1I	GCGC	1 cut(s)	160
HincII	GTYRAC	1 cut(s)	141
HindII	GTYRAC	1 cut(s)	141
HindIII	AAGCTT	2 cut(s)	92, 520
HinfI	GANTC	6 cut(s)	72, 132, 240, 616, 653, 1029
HpaII	CCGG	2 cut(s)	144, 284
HphI	GGTGA	5 cut(s)	45, 196, 282, 323, 611
Hpy166II	GTNNAC	4 cut(s)	141, 512, 720, 978
Hpy188I	TCNGA	3 cut(s)	22, 99, 673
Hpy188III	TCNNGA	1 cut(s)	503
Hpy8I	GTNNAC	4 cut(s)	141, 512, 720, 978
HpyAV	CCTTC	2 cut(s)	162, 175
HpyCH4III	ACNGT	3 cut(s)	300, 341, 853
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	106, 568, 743
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 872
HpyF3I	CTNAG	3 cut(s)	19, 32, 465
HpySE526I	ACGT	1 cut(s)	387
HspAI	GCGC	1 cut(s)	160
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	3 cut(s)	124, 280, 840
Lsp1109I	GCAGC	4 cut(s)	397, 403, 816, 859
LweI	GCATC	1 cut(s)	670
MaeII	ACGT	1 cut(s)	387
MalI	GATC	3 cut(s)	126, 282, 842
MbiI	CCGCTC	1 cut(s)	323
MboI	GATC	3 cut(s)	124, 280, 840
MboII	GAAGA	7 cut(s)	121, 227, 230, 275, 278, 564, 841
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	193, 290, 487
MluCI	AATT	8 cut(s)	147, 275, 305, 603, 678, 933, 949, 963
MlyI	GAGTC	3 cut(s)	249, 610, 1023
MmeI	TCCRAC	3 cut(s)	122, 535, 839
MnlI	CCTC	7 cut(s)	26, 48, 217, 303, 354, 459, 821
MroXI	GAANNNNTTC	2 cut(s)	116, 523
MseI	TTAA	4 cut(s)	252, 348, 921, 962
MslI	CAYNNNNRTG	2 cut(s)	507, 636
MspCI	CTTAAG	1 cut(s)	920
MspI	CCGG	2 cut(s)	144, 284
MspR9I	CCNGG	3 cut(s)	47, 285, 774
Mva1269I	GAATGC	1 cut(s)	568
MvaI	CCWGG	2 cut(s)	47, 774
MwoI	GCNNNNNNNGC	2 cut(s)	416, 872
NciI	CCSGG	1 cut(s)	285
NcoI	CCATGG	3 cut(s)	356, 631, 867
NdeII	GATC	3 cut(s)	124, 280, 840
NlaIV	GGNNCC	3 cut(s)	14, 354, 472
NspI	RCATGY	1 cut(s)	641
NspV	TTCGAA	1 cut(s)	527
PagI	TCATGA	1 cut(s)	502
PceI	AGGCCT	1 cut(s)	37
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	568
PdmI	GAANNNNTTC	2 cut(s)	116, 523
PfeI	GAWTC	3 cut(s)	72, 132, 653
PflMI	CCANNNNNTGG	1 cut(s)	480
PfoI	TCCNGGA	1 cut(s)	772
PkrI	GCNGC	7 cut(s)	79, 325, 412, 415, 418, 806, 874
PleI	GAGTC	3 cut(s)	248, 610, 1023
PpsI	GAGTC	3 cut(s)	248, 610, 1023
PpuMI	RGGWCCY	2 cut(s)	13, 352
PscI	ACATGT	1 cut(s)	637
Psp5II	RGGWCCY	2 cut(s)	13, 352
Psp6I	CCWGG	2 cut(s)	45, 772
PspGI	CCWGG	2 cut(s)	45, 772
PspN4I	GGNNCC	3 cut(s)	14, 354, 472
PspPI	GGNCC	5 cut(s)	13, 352, 363, 471, 905
PspPPI	RGGWCCY	2 cut(s)	13, 352
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	585, 1060
RsaNI	GTAC	2 cut(s)	584, 1059
RseI	CAYNNNNRTG	2 cut(s)	507, 636
SalI	GTCGAC	1 cut(s)	139
SaqAI	TTAA	4 cut(s)	252, 348, 921, 962
SatI	GCNGC	7 cut(s)	78, 324, 411, 414, 417, 805, 873
Sau3AI	GATC	3 cut(s)	124, 280, 840
Sau96I	GGNCC	5 cut(s)	13, 352, 363, 471, 905
SchI	GAGTC	3 cut(s)	249, 610, 1023
ScrFI	CCNGG	3 cut(s)	47, 285, 774
SduI	GDGCHC	3 cut(s)	193, 290, 487
SfaNI	GCATC	1 cut(s)	670
SfcI	CTRYAG	1 cut(s)	210
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	5 cut(s)	13, 352, 363, 471, 905
SmiMI	CAYNNNNRTG	2 cut(s)	507, 636
SmlI	CTYRAG	1 cut(s)	920
SmoI	CTYRAG	1 cut(s)	920
Sse9I	AATT	8 cut(s)	147, 275, 305, 603, 678, 933, 949, 963
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	5 cut(s)	78, 323, 413, 419, 715
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	3 cut(s)	45, 283, 772
StyI	CCWWGG	3 cut(s)	356, 631, 867
TaaI	ACNGT	3 cut(s)	300, 341, 853
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	3 cut(s)	140, 279, 527
TasI	AATT	8 cut(s)	147, 275, 305, 603, 678, 933, 949, 963
TatI	WGTACW	1 cut(s)	1058
TauI	GCSGC	3 cut(s)	80, 326, 416
TfiI	GAWTC	3 cut(s)	72, 132, 653
Tru1I	TTAA	4 cut(s)	252, 348, 921, 962
Tru9I	TTAA	4 cut(s)	252, 348, 921, 962
TscAI	CASTG	2 cut(s)	344, 856
TseI	GCWGC	4 cut(s)	410, 416, 804, 872
TspDTI	ATGAA	4 cut(s)	276, 443, 666, 957
TspGWI	ACGGA	1 cut(s)	654
TspRI	CASTG	2 cut(s)	344, 856
Van91I	CCANNNNNTGG	1 cut(s)	480
Vha464I	CTTAAG	1 cut(s)	920
VpaK11BI	GGWCC	5 cut(s)	13, 352, 363, 471, 905
XapI	RAATTY	5 cut(s)	147, 275, 678, 933, 949
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	3 cut(s)	339, 373, 629
XmiI	GTMKAC	1 cut(s)	140
XmnI	GAANNNNTTC	2 cut(s)	116, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.