Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Forward (+)

47241159 .. 47243256

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0356300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGCTCTTGAGATTGCTGCCAAGGCTGCTGCTGGTGCCCCTGAAATTCTTGGTGACTGTCCTTTCACCCAAAGGGTTCTTGTCACTTTGGAGGAGAAGAAAGTACCTTACAAGCTCCACCTCATAAACTTGGCTGACAAGCCCCAATGGTTTACAGAAGTGAATCCAGAGGGAAAGGTGCCTGTGGTGAAGTTCGATGACAAATGGGTCTCTGATTCTGATGTGCTTGTTGGGATTCTTGAGGAAAAGTACCCTGAACCTGTTCTCAAAACTCCTCCTGAATTTGCTTCAGTGGGATCAAAGATTTTTGGGTCATTTGTGACATTCCTCAAGAGCAAGGATCCCAGCGACGGTTCGGAACAGGCTTTGCTTAATGAACTGAAGGCATTGGATGAGCATCTTAAGGCACATGGTCCATACATTGCTGGGGAGAAGATCACTGCTGCTGATCTAAGCTTGGCACCAAAACTGTACCATCTCAAGGTGGCTCTTGGCCATTTCAAGAAGTGGACTGTCCCTGAAAGCTTGACCCATTACCACAAGTACACTGAGTTGTTGTTCTCAAGGGAATCTTTTGTGAAGACCATCGCCGAAGATAAATATATTATTGCAGGATGGGAGCCGAAAGTCAACCCCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031090 GO:0031967 GO:0031975 GO:0032787 GO:0042170 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

213

Amino Acids

23.77

Weight (kDa)

6.18

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLIC-like_N	PF22441	3 - 84	6.3e-08	CLIC-like N-terminal domain
GST_N_3	PF13417	19 - 87	5.8e-17	Glutathione S-transferase, N-terminal domain
GST_N	PF02798	19 - 74	2.4e-06	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	20 - 82	1.6e-17	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	120 - 177	3.2e-08	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	3 cut(s)	35, 178, 460
AclWI	GGATC	3 cut(s)	304, 335, 348
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	45, 281
AcuI	CTGAAG	2 cut(s)	273, 401
AfaI	GTAC	4 cut(s)	105, 251, 473, 545
AfiI	CCNNNNNNNGG	2 cut(s)	350, 481
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	1 cut(s)	502
AluBI	AGCT	3 cut(s)	115, 456, 525
AluI	AGCT	3 cut(s)	115, 456, 525
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	3 cut(s)	304, 335, 348
AoxI	GGCC	1 cut(s)	493
ApeKI	GCWGC	4 cut(s)	17, 26, 29, 443
ApoI	RAATTY	2 cut(s)	45, 281
Asp700I	GAANNNNTTC	1 cut(s)	261
AspS9I	GGNCC	1 cut(s)	413
AsuHPI	GGTGA	3 cut(s)	58, 65, 199
AvaII	GGWCC	1 cut(s)	413
BaeGI	GKGCMC	1 cut(s)	40
BalI	TGGCCA	1 cut(s)	495
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	3 cut(s)	35, 178, 460
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	4 cut(s)	4, 13, 16, 430
BccI	CCATC	3 cut(s)	483, 593, 609
BcoDI	GTCTC	1 cut(s)	214
BfrI	CTTAAG	1 cut(s)	401
BisI	GCNGC	4 cut(s)	18, 27, 30, 444
BlsI	GCNGC	4 cut(s)	19, 28, 31, 445
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmiI	GGNNCC	5 cut(s)	37, 180, 342, 462, 621
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	1 cut(s)	587
BpuEI	CTTGAG	5 cut(s)	29, 260, 314, 464, 547
BsaBI	GATNNNNATC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	214
BsaJI	CCNNGG	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 481
Bse3DI	GCAATG	1 cut(s)	420
Bse8I	GATNNNNATC	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	2 cut(s)	397, 620
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	2 cut(s)	350, 481
BseMI	GCAATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	540
BseRI	GAGGAG	2 cut(s)	107, 264
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	4 cut(s)	4, 13, 16, 430
BseYI	CCCAGC	2 cut(s)	344, 425
BshFI	GGCC	1 cut(s)	495
BshNI	GGYRCC	3 cut(s)	35, 178, 460
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	2 cut(s)	350, 481
BsmAI	GTCTC	1 cut(s)	214
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	495
Bso31I	GGTCTC	1 cut(s)	214
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	4 cut(s)	296, 340, 435, 448
BspANI	GGCC	1 cut(s)	495
BspCNI	CTCAG	1 cut(s)	541
BspLI	GGNNCC	5 cut(s)	37, 180, 342, 462, 621
BspPI	GGATC	3 cut(s)	304, 335, 348
BspT107I	GGYRCC	3 cut(s)	35, 178, 460
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	420
BssECI	CCNNGG	1 cut(s)	21
BssMI	GATC	4 cut(s)	296, 340, 435, 448
BssT1I	CCWWGG	1 cut(s)	21
Bst4CI	ACNGT	4 cut(s)	59, 353, 471, 514
BstAFI	CTTAAG	1 cut(s)	401
BstDEI	CTNAG	2 cut(s)	452, 549
BstF5I	GGATG	2 cut(s)	397, 620
BstKTI	GATC	4 cut(s)	299, 343, 438, 451
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	4 cut(s)	296, 340, 435, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 26, 35
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	4 cut(s)	4, 13, 16, 430
BstV2I	GAAGAC	1 cut(s)	587
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuRI	GGCC	1 cut(s)	495
BtgZI	GCGATG	1 cut(s)	571
BtsCI	GGATG	2 cut(s)	397, 620
BtsI	GCAGTG	1 cut(s)	438
BtsIMutI	CAGTG	3 cut(s)	297, 438, 546
Cfr13I	GGNCC	1 cut(s)	413
Csp6I	GTAC	4 cut(s)	104, 250, 472, 544
CviAII	CATG	1 cut(s)	410
CviQI	GTAC	4 cut(s)	104, 250, 472, 544
DdeI	CTNAG	2 cut(s)	452, 549
DpnI	GATC	4 cut(s)	298, 342, 437, 450
DpnII	GATC	4 cut(s)	296, 340, 435, 448
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	2 cut(s)	273, 401
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaeI	CATG	1 cut(s)	413
FaiI	YATR	4 cut(s)	125, 411, 418, 603
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	18, 27, 30, 444
FokI	GGATG	2 cut(s)	404, 627
Fsp4HI	GCNGC	4 cut(s)	18, 27, 30, 444
GluI	GCNGC	4 cut(s)	18, 27, 30, 444
GsaI	CCCAGC	2 cut(s)	348, 429
HaeIII	GGCC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	413
HincII	GTYRAC	1 cut(s)	631
HindII	GTYRAC	1 cut(s)	631
HindIII	AAGCTT	2 cut(s)	454, 523
HinfI	GANTC	4 cut(s)	163, 215, 235, 569
HphI	GGTGA	3 cut(s)	58, 65, 199
Hpy166II	GTNNAC	4 cut(s)	153, 510, 546, 631
Hpy188I	TCNGA	3 cut(s)	214, 220, 358
Hpy188III	TCNNGA	6 cut(s)	8, 167, 239, 278, 331, 502
Hpy8I	GTNNAC	4 cut(s)	153, 510, 546, 631
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	4 cut(s)	59, 353, 471, 514
HpyCH4V	TGCA	1 cut(s)	611
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 26, 35
HpyF3I	CTNAG	2 cut(s)	452, 549
Hsp92II	CATG	1 cut(s)	413
Kzo9I	GATC	4 cut(s)	296, 340, 435, 448
LmnI	GCTCC	2 cut(s)	120, 619
Lsp1109I	GCAGC	4 cut(s)	4, 13, 16, 430
LweI	GCATC	1 cut(s)	406
MaeIII	GTNAC	3 cut(s)	53, 82, 319
MalI	GATC	4 cut(s)	298, 342, 437, 450
MboI	GATC	4 cut(s)	296, 340, 435, 448
MboII	GAAGA	4 cut(s)	109, 445, 592, 605
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	40
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	2 cut(s)	45, 281
MluNI	TGGCCA	1 cut(s)	495
MnlI	CCTC	6 cut(s)	85, 131, 163, 235, 285, 338
Mox20I	TGGCCA	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	261
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	2 cut(s)	372, 402
Msp20I	TGGCCA	1 cut(s)	495
MspCI	CTTAAG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	23, 26, 35
NdeII	GATC	4 cut(s)	296, 340, 435, 448
NlaIII	CATG	1 cut(s)	413
NlaIV	GGNNCC	5 cut(s)	37, 180, 342, 462, 621
NmuCI	GTSAC	3 cut(s)	53, 82, 319
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	163, 215, 235, 569
PkrI	GCNGC	4 cut(s)	19, 28, 31, 445
PspFI	CCCAGC	2 cut(s)	344, 425
PspN4I	GGNNCC	5 cut(s)	37, 180, 342, 462, 621
PspPI	GGNCC	1 cut(s)	413
PsuI	RGATCY	1 cut(s)	340
RsaI	GTAC	4 cut(s)	105, 251, 473, 545
RsaNI	GTAC	4 cut(s)	104, 250, 472, 544
SaqAI	TTAA	2 cut(s)	372, 402
SatI	GCNGC	4 cut(s)	18, 27, 30, 444
Sau3AI	GATC	4 cut(s)	296, 340, 435, 448
Sau96I	GGNCC	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	8 cut(s)	109, 117, 123, 180, 262, 458, 486, 527
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	6 cut(s)	8, 239, 329, 401, 479, 562
SmoI	CTYRAG	6 cut(s)	8, 239, 329, 401, 479, 562
Sse9I	AATT	2 cut(s)	45, 281
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	4 cut(s)	59, 353, 471, 514
TaqI	TCGA	1 cut(s)	195
TasI	AATT	2 cut(s)	45, 281
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	163, 215, 235, 569
Tru1I	TTAA	2 cut(s)	372, 402
Tru9I	TTAA	2 cut(s)	372, 402
TscAI	CASTG	3 cut(s)	297, 445, 553
TseFI	GTSAC	3 cut(s)	53, 82, 319
TseI	GCWGC	4 cut(s)	17, 26, 29, 443
Tsp45I	GTSAC	3 cut(s)	53, 82, 319
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	297, 445, 553
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	2 cut(s)	45, 281
XmnI	GAANNNNTTC	1 cut(s)	261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.