RLG00000024827

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
39468508 .. 39470680
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024827

Sequence Viewer

Length: 1413 bp
ATGGCGAGTCGGGTCCTCTCAGAATGTGGCCTAAGACCTCTCCCCCAGGTTTCACCCAGAACCAGAACCAGAATCGCCGCAAACCCAATAAAGCTGCCAACTTTGCAGAAGAACAACTTCGCAGATCTTGGATTCGGGTCGACCCGAATTTCAAGTGGGCGCTTTAGAAGGTTGGGAGTGAAGGTGAGTGCCCCATTGAAAGTTGCTTCTACAGAAGAAGATGAGGCAGAGAGAATGAGAGTCAATGGTGTTAATGGAGATGAAGAAGAGATTGAATTCGATCCGGGCTCACCTCCACCGTTCAAATTGGGTGATGTTAGAGCGGCAATCCCAAAGCATTGTTGGGTTAAGGACCCATGGAGGTCCATGAGCTATGTGGTTAGGGATGTGGTGGTGGTTTTTGGGTTGGCTGCGGCTGCGGTTTATATGAACGAGTGGTATGTTTGGCCTCTGTATTGGGTTGCTCAGGGGACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGACATGGAAGCTTTTCGAACAATCCAAAGCTAAATAGTGTGGTTGGACATCTATTGCATTCTTCCATACTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCACCATCAAAACCATGGACATGTTGAGAATGATGAATCATGGCATCCGTTGTCCGAGAGAATTTACAGAACTTTGGATAAAACAACAAAAATGTTGCGGTTCACTTTGCCTTTTCCCTTGCTTGCATACCCTTTCTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCATTTTGAGCCAAGCAGCGACCTCTTTGTCCCCAATGAGAAGAAAGATGTGATCACTTCCACTGTATGTTGGATAGCCATGGCTGCTTTGCTTGTGGGATTATCATTTGTGATTGGTCCTATTCAAATGCTTAAGCTCTATGGAATTCCCTACTCGGTATTTGTCATGTGGTTGGATTTAGTGACTTACTTGCACCATCATGGTCCCGAAGACAAGTTACCATGGTATCGTGGAAAGGTACTGAACTGTTTCATTCATGATAGGGATTGCCTTCCATATCATACCACAACGAGGAACTTTCTCTGGATACTTTTCATCTATTATCTGAGGGGAGGGCTCACAACACTTGATCGTGATTACGGATTGATCAATAACATCCATCACGATATTGGAACCCATGTGGTCCATCATCTCTTTCCTCAAATCCCTCACTACCATTTAGTTGAAGCAACAGAGGCGGCCAAGCCGGTGTTTGGGAAATATTACAGAGAGCCGAAGAAATCAGGACCTCTACCGTTCCACCTACTCGGAAGTTTTATAACAAGCTTGAAAAAAGACCATTACGTCAGTGACTCGGGGGATGTTGTGTACTACCAAACCGACCCCGAGCTTAGTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

471

Amino Acids

53.77

Weight (kDa)

8.81

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 138 2.1e-51 Domain of unknown function (DUF3474)
FA_desaturase PF00487 147 - 425 1.9e-28 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1328
AasI GACNNNNNNGTC 2 cut(s) 815, 1352
AccB7I CCANNNNNTGG 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 140
AciI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1247
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 1248
AcsI RAATTY 4 cut(s) 147, 275, 678, 933
AfaI GTAC 3 cut(s) 585, 1029, 1379
AfiI CCNNNNNNNGG 4 cut(s) 480, 593, 1080, 1262
AflII CTTAAG 1 cut(s) 920
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 8 cut(s) 153, 199, 275, 304, 914, 1235, 1339, 1407
AjnI CCWGG 2 cut(s) 45, 772
AluBI AGCT 7 cut(s) 94, 372, 522, 541, 925, 1335, 1399
AluI AGCT 7 cut(s) 94, 372, 522, 541, 925, 1335, 1399
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 2 cut(s) 1363, 1394
AoxI GGCC 3 cut(s) 28, 446, 1248
ApeKI GCWGC 5 cut(s) 94, 410, 416, 804, 872
ApoI RAATTY 4 cut(s) 147, 275, 678, 933
Asp700I GAANNNNTTC 3 cut(s) 116, 523, 1037
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 5 cut(s) 45, 196, 282, 323, 611
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 1363, 1394
AvaII GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 998, 1031
BanII GRGCYC 3 cut(s) 290, 487, 1128
BarI GAAGNNNNNNTAC 2 cut(s) 990, 1022
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 5 cut(s) 81, 397, 403, 816, 859
BccI CCATC 5 cut(s) 591, 630, 993, 1176, 1203
BciT130I CCWGG 2 cut(s) 47, 774
BciVI GTATCC 1 cut(s) 1089
BclI TGATCA 2 cut(s) 840, 1155
BcnI CCSGG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 920
BfuI GTATCC 1 cut(s) 1089
BglII AGATCT 1 cut(s) 124
BisI GCNGC 9 cut(s) 78, 95, 324, 411, 414, 417, 805, 873, 1248
BlsI GCNGC 9 cut(s) 79, 96, 325, 412, 415, 418, 806, 874, 1249
Bme1390I CCNGG 3 cut(s) 47, 285, 774
Bme18I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
BmeT110I CYCGRG 2 cut(s) 1363, 1394
BmgT120I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
BmiI GGNNCC 5 cut(s) 14, 354, 472, 994, 1183
BmrFI CCNGG 3 cut(s) 47, 285, 774
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 4 cut(s) 480, 593, 1080, 1262
Bse118I RCCGGY 1 cut(s) 1255
Bse1I ACTGG 1 cut(s) 787
BseBI CCWGG 2 cut(s) 47, 774
BseDI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BseGI GGATG 5 cut(s) 391, 602, 661, 1164, 1375
BseLI CCNNNNNNNGG 4 cut(s) 480, 593, 1080, 1262
BseMII CTCAG 3 cut(s) 33, 479, 1106
BseNI ACTGG 1 cut(s) 787
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 5 cut(s) 81, 397, 403, 816, 859
BshFI GGCC 3 cut(s) 30, 448, 1250
BsiHKCI CYCGRG 2 cut(s) 1363, 1394
BsiSI CCGG 2 cut(s) 284, 1256
BslFI GGGAC 3 cut(s) 484, 803, 978
BslI CCNNNNNNNGG 4 cut(s) 480, 593, 1080, 1262
BsmFI GGGAC 3 cut(s) 484, 803, 978
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 3 cut(s) 30, 448, 1250
BsoBI CYCGRG 2 cut(s) 1363, 1394
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 4 cut(s) 193, 290, 487, 1128
Bsp143I GATC 5 cut(s) 124, 280, 840, 1138, 1155
Bsp19I CCATGG 4 cut(s) 356, 631, 867, 1010
BspACI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1247
BspANI GGCC 3 cut(s) 30, 448, 1250
BspCNI CTCAG 3 cut(s) 32, 478, 1107
BspHI TCATGA 2 cut(s) 502, 1045
BspLI GGNNCC 5 cut(s) 14, 354, 472, 994, 1183
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 920
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 1255
BsrI ACTGG 1 cut(s) 787
BssAI RCCGGY 1 cut(s) 1255
BssECI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BssMI GATC 5 cut(s) 124, 280, 840, 1138, 1155
BssT1I CCWWGG 4 cut(s) 356, 631, 867, 1010
Bst2UI CCWGG 2 cut(s) 47, 774
Bst4CI ACNGT 4 cut(s) 300, 853, 1037, 1305
Bst6I CTCTTC 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 5 cut(s) 19, 32, 465, 1115, 1400
BstDSI CCRYGG 4 cut(s) 356, 631, 867, 1010
BstF5I GGATG 5 cut(s) 391, 602, 661, 1164, 1375
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 127, 283, 843, 1141, 1158
BstMBI GATC 5 cut(s) 124, 280, 840, 1138, 1155
BstMWI GCNNNNNNNGC 4 cut(s) 103, 416, 872, 1244
BstNI CCWGG 2 cut(s) 47, 774
BstNSI RCATGY 1 cut(s) 641
BstSCI CCNGG 3 cut(s) 45, 283, 772
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 5 cut(s) 81, 397, 403, 816, 859
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BsuI GTATCC 1 cut(s) 1089
BsuRI GGCC 3 cut(s) 30, 448, 1250
BtgI CCRYGG 4 cut(s) 356, 631, 867, 1010
BtsCI GGATG 5 cut(s) 391, 602, 661, 1164, 1375
BtsIMutI CAGTG 2 cut(s) 849, 1363
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 2 cut(s) 502, 1045
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 1255
Cfr13I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
Csp6I GTAC 3 cut(s) 584, 1028, 1378
CviQI GTAC 3 cut(s) 584, 1028, 1378
DdeI CTNAG 5 cut(s) 19, 32, 465, 1115, 1400
DpnI GATC 5 cut(s) 126, 282, 842, 1140, 1157
DpnII GATC 5 cut(s) 124, 280, 840, 1138, 1155
DrdI GACNNNNNNGTC 2 cut(s) 815, 1352
DseDI GACNNNNNNGTC 2 cut(s) 815, 1352
EaeI YGGCCR 1 cut(s) 1248
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 4 cut(s) 356, 631, 867, 1010
Eco24I GRGCYC 3 cut(s) 290, 487, 1128
Eco47I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
Eco88I CYCGRG 2 cut(s) 1363, 1394
EcoO109I RGGNCCY 3 cut(s) 13, 352, 1295
EcoRI GAATTC 2 cut(s) 275, 933
EcoRII CCWGG 2 cut(s) 45, 772
EcoT14I CCWWGG 4 cut(s) 356, 631, 867, 1010
EcoT38I GRGCYC 3 cut(s) 290, 487, 1128
ErhI CCWWGG 4 cut(s) 356, 631, 867, 1010
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 3 cut(s) 484, 803, 978
FbaI TGATCA 2 cut(s) 840, 1155
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 9 cut(s) 78, 95, 324, 411, 414, 417, 805, 873, 1248
FokI GGATG 5 cut(s) 398, 609, 648, 1151, 1382
FriOI GRGCYC 3 cut(s) 290, 487, 1128
Fsp4HI GCNGC 9 cut(s) 78, 95, 324, 411, 414, 417, 805, 873, 1248
GlaI GCGC 1 cut(s) 161
GluI GCNGC 9 cut(s) 78, 95, 324, 411, 414, 417, 805, 873, 1248
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 3 cut(s) 30, 448, 1250
HapII CCGG 2 cut(s) 284, 1256
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 2 cut(s) 520, 1333
HinfI GANTC 7 cut(s) 7, 72, 132, 240, 616, 653, 1361
HpaII CCGG 2 cut(s) 284, 1256
HphI GGTGA 5 cut(s) 45, 196, 282, 323, 611
Hpy166II GTNNAC 4 cut(s) 141, 512, 720, 1378
Hpy188I TCNGA 4 cut(s) 22, 673, 1116, 1319
Hpy188III TCNNGA 7 cut(s) 503, 995, 1046, 1093, 1142, 1172, 1293
Hpy8I GTNNAC 4 cut(s) 141, 512, 720, 1378
HpyAV CCTTC 3 cut(s) 162, 175, 1070
HpyCH4III ACNGT 4 cut(s) 300, 853, 1037, 1305
HpyCH4IV ACGT 1 cut(s) 1353
HpyCH4V TGCA 4 cut(s) 106, 568, 743, 982
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 416, 872, 1244
HpyF3I CTNAG 5 cut(s) 19, 32, 465, 1115, 1400
HpySE526I ACGT 1 cut(s) 1353
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 840, 1155
Kzo9I GATC 5 cut(s) 124, 280, 840, 1138, 1155
Lsp1109I GCAGC 5 cut(s) 81, 397, 403, 816, 859
LweI GCATC 1 cut(s) 670
MaeII ACGT 1 cut(s) 1353
MaeIII GTNAC 3 cut(s) 970, 1005, 1358
MalI GATC 5 cut(s) 126, 282, 842, 1140, 1157
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 124, 280, 840, 1138, 1155
MboII GAAGA 9 cut(s) 121, 227, 230, 275, 278, 564, 841, 1010, 1297
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 193, 290, 487, 1128
MluCI AATT 6 cut(s) 147, 275, 305, 603, 678, 933
MlyI GAGTC 4 cut(s) 16, 249, 610, 1355
MmeI TCCRAC 3 cut(s) 535, 839, 942
MroXI GAANNNNTTC 3 cut(s) 116, 523, 1037
MseI TTAA 3 cut(s) 252, 348, 921
MslI CAYNNNNRTG 3 cut(s) 507, 636, 987
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 2 cut(s) 284, 1256
MspR9I CCNGG 3 cut(s) 47, 285, 774
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 47, 774
MwoI GCNNNNNNNGC 4 cut(s) 103, 416, 872, 1244
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 4 cut(s) 356, 631, 867, 1010
NdeII GATC 5 cut(s) 124, 280, 840, 1138, 1155
NlaIV GGNNCC 5 cut(s) 14, 354, 472, 994, 1183
NmuCI GTSAC 2 cut(s) 970, 1358
NspI RCATGY 1 cut(s) 641
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 2 cut(s) 502, 1045
PciI ACATGT 1 cut(s) 637
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 3 cut(s) 116, 523, 1037
PfeI GAWTC 3 cut(s) 72, 132, 653
PflMI CCANNNNNTGG 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 9 cut(s) 79, 96, 325, 412, 415, 418, 806, 874, 1249
PleI GAGTC 4 cut(s) 15, 248, 610, 1355
PpsI GAGTC 4 cut(s) 15, 248, 610, 1355
PpuMI RGGWCCY 3 cut(s) 13, 352, 1295
PscI ACATGT 1 cut(s) 637
PsiI TTATAA 1 cut(s) 1328
Psp5II RGGWCCY 3 cut(s) 13, 352, 1295
Psp6I CCWGG 2 cut(s) 45, 772
PspGI CCWGG 2 cut(s) 45, 772
PspN4I GGNNCC 5 cut(s) 14, 354, 472, 994, 1183
PspPI GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
PspPPI RGGWCCY 3 cut(s) 13, 352, 1295
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 3 cut(s) 585, 1029, 1379
RsaNI GTAC 3 cut(s) 584, 1028, 1378
RseI CAYNNNNRTG 3 cut(s) 507, 636, 987
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 252, 348, 921
SatI GCNGC 9 cut(s) 78, 95, 324, 411, 414, 417, 805, 873, 1248
Sau3AI GATC 5 cut(s) 124, 280, 840, 1138, 1155
Sau96I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
SchI GAGTC 4 cut(s) 16, 249, 610, 1355
ScrFI CCNGG 3 cut(s) 47, 285, 774
SduI GDGCHC 4 cut(s) 193, 290, 487, 1128
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
SmiMI CAYNNNNRTG 3 cut(s) 507, 636, 987
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 6 cut(s) 147, 275, 305, 603, 678, 933
SsiI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1247
SspI AATATT 1 cut(s) 1271
StyD4I CCNGG 3 cut(s) 45, 283, 772
StyI CCWWGG 4 cut(s) 356, 631, 867, 1010
TaaI ACNGT 4 cut(s) 300, 853, 1037, 1305
TaiI ACGT 1 cut(s) 1356
TaqI TCGA 3 cut(s) 140, 279, 527
TasI AATT 6 cut(s) 147, 275, 305, 603, 678, 933
TatI WGTACW 1 cut(s) 1377
TauI GCSGC 4 cut(s) 80, 326, 416, 1250
TfiI GAWTC 3 cut(s) 72, 132, 653
Tru1I TTAA 3 cut(s) 252, 348, 921
Tru9I TTAA 3 cut(s) 252, 348, 921
TscAI CASTG 2 cut(s) 856, 1363
TseFI GTSAC 2 cut(s) 970, 1358
TseI GCWGC 5 cut(s) 94, 410, 416, 804, 872
Tsp45I GTSAC 2 cut(s) 970, 1358
TspDTI ATGAA 6 cut(s) 276, 443, 666, 1030, 1034, 1093
TspGWI ACGGA 2 cut(s) 654, 1164
TspRI CASTG 2 cut(s) 856, 1363
Van91I CCANNNNNTGG 1 cut(s) 480
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1192, 1295
XapI RAATTY 4 cut(s) 147, 275, 678, 933
XceI RCATGY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 4 cut(s) 339, 373, 629, 1175
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 3 cut(s) 116, 523, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.