RchiOBHm_Chr3g0462851

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
10386480 .. 10389320
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42918

Sequence Viewer

Length: 1338 bp
ATGGCGAGTTGGGTCCTCTCAGAATGTGGCCTAAGGCCTCTCCCCCAGGTTTCACCGAGACCCAGAACCAGAATCGCCGCAAACCCAATAAAGCTTCCGACTTTGCAGAAGAACAACTTCGCAGATCTTGGATTCGGGTCGACCGGAATTTCAAGTGGGCGCTTTAGAAGGTGGGGAGTGAAGGTGAGTGCCCCATTGAAAGTTGCTTCTACAGAAGAAGATGAGGCAGAGAGAATGAGAGTCAATGGCGTTAATGGAGATGAAGAAGAGATTGAATTCGATCCGGGCTCACCTCCACCGTTCAAATTGGGTGATGTTAGAGCGGCAATCCCAAAGCACTGTTGGGTTAAGGACCCATGGAGGTCCATGAGCTATGTGGTTAGGGACGTGGTGGTGGTTTTTGGGTTGGCTGCGGCTGCGGTTTATATGAACAAGTGGTATGTTTGGCCTCTGTATTGGGTTGCTCAGGGGACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGATTGTGGACATGGAAGCTTTTCGAATAATCCAAAGCTAAATAGTGTGGTTGGACATCTATTGCATTCTTCCATACTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCACCATCAAAACCATGGACATGTTGAGAATGATGAATCATGGCATCCGTTGTCCGAGAGAATTTACAGAACTTTGGATAAAACAACAAAAATGTTGCGGTTCACTTTGCCTTTTCCCTTGCTTGCATACCCTTTCTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCATTTTGAGCCAAGCAGCGACCTCTTTGTCCCCAATGAGAAGAAAGATGTGATCACTTCCACTGTATGTTGGATAGCCATGGCTGCTTTGCTTGTGGGATTATCATTTGTGATTGGTCCTATTCAAATGCTTAAGCTCTATGGAATTCCCTACTGGGTATTTGTCATGTGGTTGGATTTAGTGACTTACTTGCACCATCATGGTCCCGAAGACAAGTTACCGTGGTATCGTGGAAAGGAATGGAGTTATCTGAGGGGAGGGCTCACAACACTTGATCGTGATTACGGAGTGATCAATAACATCCATCACGATATTGGAACGCATGTGGTCCATCATCTTTTCCCACAAATCCCTCACTACCATTTAGTTGAAGCAACAGAGGCGGCCAAGCCGGTGTTTGCGAAATATTACAGAGAGCCGAAGAAATCAGGACCTCTACCGTTCCACCTACTTGGAAGTTTTATAACAAGCTTGAAAAAAGACCATTACGTCAGTGACTCGGGGGATGTTGTGTACTACCAAACCGACCCCGAGCTTAGTTCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

50.77

Weight (kDa)

8.79

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 138 4.6e-55 Domain of unknown function (DUF3474)
FA_desaturase PF00487 146 - 400 5.2e-33 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1253
AasI GACNNNNNNGTC 2 cut(s) 815, 1277
AccB7I CCANNNNNTGG 1 cut(s) 480
AccBSI CCGCTC 1 cut(s) 323
AccI GTMKAC 1 cut(s) 140
AciI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
AclWI GGATC 1 cut(s) 275
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 4 cut(s) 147, 275, 678, 933
AfaI GTAC 2 cut(s) 585, 1304
AfiI CCNNNNNNNGG 2 cut(s) 480, 593
AflII CTTAAG 1 cut(s) 920
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 8 cut(s) 153, 199, 275, 304, 914, 1160, 1264, 1332
AjiI CACGTC 1 cut(s) 388
AjnI CCWGG 2 cut(s) 45, 772
AluBI AGCT 7 cut(s) 94, 372, 522, 541, 925, 1260, 1324
AluI AGCT 7 cut(s) 94, 372, 522, 541, 925, 1260, 1324
Alw26I GTCTC 1 cut(s) 52
AlwI GGATC 1 cut(s) 275
Ama87I CYCGRG 2 cut(s) 1288, 1319
AoxI GGCC 4 cut(s) 28, 35, 446, 1173
ApeKI GCWGC 4 cut(s) 410, 416, 804, 872
ApoI RAATTY 4 cut(s) 147, 275, 678, 933
Asp700I GAANNNNTTC 2 cut(s) 116, 523
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
AsuC2I CCSGG 1 cut(s) 285
AsuHPI GGTGA 5 cut(s) 45, 196, 282, 323, 611
AsuII TTCGAA 1 cut(s) 527
AvaI CYCGRG 2 cut(s) 1288, 1319
AvaII GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
AxyI CCTNAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 998, 1031
BanII GRGCYC 3 cut(s) 290, 487, 1053
BarI GAAGNNNNNNTAC 2 cut(s) 990, 1022
BbsI GAAGAC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 397, 403, 816, 859
BccI CCATC 5 cut(s) 591, 630, 993, 1101, 1128
BciT130I CCWGG 2 cut(s) 47, 774
BclI TGATCA 2 cut(s) 840, 1080
BcnI CCSGG 1 cut(s) 285
BcoDI GTCTC 1 cut(s) 52
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 920
BglII AGATCT 1 cut(s) 124
BisI GCNGC 8 cut(s) 78, 324, 411, 414, 417, 805, 873, 1173
BlsI GCNGC 8 cut(s) 79, 325, 412, 415, 418, 806, 874, 1174
Bme1390I CCNGG 3 cut(s) 47, 285, 774
Bme18I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
BmeT110I CYCGRG 2 cut(s) 1288, 1319
BmgBI CACGTC 1 cut(s) 388
BmgT120I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
BmiI GGNNCC 4 cut(s) 14, 354, 472, 994
BmrFI CCNGG 3 cut(s) 47, 285, 774
BmrI ACTGGG 1 cut(s) 952
BmsI GCATC 1 cut(s) 670
BmuI ACTGGG 1 cut(s) 952
BpiI GAAGAC 1 cut(s) 1005
Bpu10I CCTNAGC 1 cut(s) 465
Bpu14I TTCGAA 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 52
BsaJI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 480, 593
Bse118I RCCGGY 1 cut(s) 1180
Bse1I ACTGG 2 cut(s) 787, 947
Bse21I CCTNAGG 1 cut(s) 32
BseBI CCWGG 2 cut(s) 47, 774
BseDI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BseGI GGATG 4 cut(s) 602, 661, 1089, 1300
BseLI CCNNNNNNNGG 2 cut(s) 480, 593
BseMII CTCAG 3 cut(s) 33, 479, 1031
BseNI ACTGG 2 cut(s) 787, 947
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 4 cut(s) 397, 403, 816, 859
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 30, 37, 448, 1175
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 2 cut(s) 1288, 1319
BsiSI CCGG 3 cut(s) 144, 284, 1181
BslFI GGGAC 4 cut(s) 398, 484, 803, 978
BslI CCNNNNNNNGG 2 cut(s) 480, 593
BsmAI GTCTC 1 cut(s) 52
BsmFI GGGAC 4 cut(s) 398, 484, 803, 978
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 4 cut(s) 30, 37, 448, 1175
Bso31I GGTCTC 1 cut(s) 52
BsoBI CYCGRG 2 cut(s) 1288, 1319
Bsp119I TTCGAA 1 cut(s) 527
Bsp1286I GDGCHC 4 cut(s) 193, 290, 487, 1053
Bsp143I GATC 5 cut(s) 124, 280, 840, 1063, 1080
Bsp19I CCATGG 3 cut(s) 356, 631, 867
BspACI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
BspANI GGCC 4 cut(s) 30, 37, 448, 1175
BspCNI CTCAG 3 cut(s) 32, 478, 1032
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 14, 354, 472, 994
BspPI GGATC 1 cut(s) 275
BspT104I TTCGAA 1 cut(s) 527
BspTI CTTAAG 1 cut(s) 920
BspTNI GGTCTC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 1180
BsrI ACTGG 2 cut(s) 787, 947
BssAI RCCGGY 1 cut(s) 1180
BssECI CCNNGG 5 cut(s) 45, 356, 631, 867, 1010
BssMI GATC 5 cut(s) 124, 280, 840, 1063, 1080
BssT1I CCWWGG 3 cut(s) 356, 631, 867
Bst2UI CCWGG 2 cut(s) 47, 774
Bst4CI ACNGT 5 cut(s) 300, 341, 853, 1011, 1230
Bst6I CTCTTC 1 cut(s) 261
BstAFI CTTAAG 1 cut(s) 920
BstBI TTCGAA 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 741
BstDEI CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
BstDSI CCRYGG 4 cut(s) 356, 631, 867, 1010
BstF5I GGATG 4 cut(s) 602, 661, 1089, 1300
BstH2I RGCGCY 1 cut(s) 163
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 5 cut(s) 127, 283, 843, 1066, 1083
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 5 cut(s) 124, 280, 840, 1063, 1080
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
BstNI CCWGG 2 cut(s) 47, 774
BstNSI RCATGY 2 cut(s) 641, 1115
BstSCI CCNGG 3 cut(s) 45, 283, 772
BstSFI CTRYAG 1 cut(s) 210
BstSLI GKGCMC 1 cut(s) 193
BstV1I GCAGC 4 cut(s) 397, 403, 816, 859
BstV2I GAAGAC 1 cut(s) 1005
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 1241
BstYI RGATCY 1 cut(s) 124
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 30, 37, 448, 1175
BtgI CCRYGG 4 cut(s) 356, 631, 867, 1010
BtrI CACGTC 1 cut(s) 388
BtsCI GGATG 4 cut(s) 602, 661, 1089, 1300
BtsIMutI CAGTG 3 cut(s) 337, 849, 1288
Cac8I GCNNGC 1 cut(s) 741
CciI TCATGA 1 cut(s) 502
CfoI GCGC 1 cut(s) 162
Cfr10I RCCGGY 1 cut(s) 1180
Cfr13I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
Csp6I GTAC 2 cut(s) 584, 1303
CviQI GTAC 2 cut(s) 584, 1303
DdeI CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
DpnI GATC 5 cut(s) 126, 282, 842, 1065, 1082
DpnII GATC 5 cut(s) 124, 280, 840, 1063, 1080
DrdI GACNNNNNNGTC 2 cut(s) 815, 1277
DseDI GACNNNNNNGTC 2 cut(s) 815, 1277
EaeI YGGCCR 1 cut(s) 1173
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 3 cut(s) 356, 631, 867
Eco147I AGGCCT 1 cut(s) 37
Eco24I GRGCYC 3 cut(s) 290, 487, 1053
Eco31I GGTCTC 1 cut(s) 52
Eco47I GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 2 cut(s) 1288, 1319
EcoO109I RGGNCCY 3 cut(s) 13, 352, 1220
EcoRI GAATTC 2 cut(s) 275, 933
EcoRII CCWGG 2 cut(s) 45, 772
EcoT14I CCWWGG 3 cut(s) 356, 631, 867
EcoT38I GRGCYC 3 cut(s) 290, 487, 1053
ErhI CCWWGG 3 cut(s) 356, 631, 867
FalI AAGNNNNNCTT 2 cut(s) 101, 133
FaqI GGGAC 4 cut(s) 398, 484, 803, 978
FbaI TGATCA 2 cut(s) 840, 1080
FblI GTMKAC 1 cut(s) 140
Fnu4HI GCNGC 8 cut(s) 78, 324, 411, 414, 417, 805, 873, 1173
FokI GGATG 4 cut(s) 609, 648, 1076, 1307
FriOI GRGCYC 3 cut(s) 290, 487, 1053
Fsp4HI GCNGC 8 cut(s) 78, 324, 411, 414, 417, 805, 873, 1173
GlaI GCGC 1 cut(s) 161
GluI GCNGC 8 cut(s) 78, 324, 411, 414, 417, 805, 873, 1173
HaeII RGCGCY 1 cut(s) 163
HaeIII GGCC 4 cut(s) 30, 37, 448, 1175
HapII CCGG 3 cut(s) 144, 284, 1181
HhaI GCGC 1 cut(s) 162
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HindIII AAGCTT 3 cut(s) 92, 520, 1258
HinfI GANTC 6 cut(s) 72, 132, 240, 616, 653, 1286
HpaII CCGG 3 cut(s) 144, 284, 1181
HphI GGTGA 5 cut(s) 45, 196, 282, 323, 611
Hpy166II GTNNAC 4 cut(s) 141, 512, 720, 1303
Hpy188I TCNGA 4 cut(s) 22, 99, 673, 1041
Hpy188III TCNNGA 5 cut(s) 503, 995, 1067, 1097, 1218
Hpy8I GTNNAC 4 cut(s) 141, 512, 720, 1303
HpyAV CCTTC 2 cut(s) 162, 175
HpyCH4III ACNGT 5 cut(s) 300, 341, 853, 1011, 1230
HpyCH4IV ACGT 2 cut(s) 387, 1278
HpyCH4V TGCA 4 cut(s) 106, 568, 743, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
HpyF3I CTNAG 5 cut(s) 19, 32, 465, 1040, 1325
HpySE526I ACGT 2 cut(s) 387, 1278
HspAI GCGC 1 cut(s) 160
Ksp22I TGATCA 2 cut(s) 840, 1080
Kzo9I GATC 5 cut(s) 124, 280, 840, 1063, 1080
Lsp1109I GCAGC 4 cut(s) 397, 403, 816, 859
LweI GCATC 1 cut(s) 670
MaeII ACGT 2 cut(s) 387, 1278
MaeIII GTNAC 3 cut(s) 970, 1005, 1283
MalI GATC 5 cut(s) 126, 282, 842, 1065, 1082
MbiI CCGCTC 1 cut(s) 323
MboI GATC 5 cut(s) 124, 280, 840, 1063, 1080
MboII GAAGA 9 cut(s) 121, 227, 230, 275, 278, 564, 841, 1010, 1222
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 193, 290, 487, 1053
MluCI AATT 6 cut(s) 147, 275, 305, 603, 678, 933
MlyI GAGTC 3 cut(s) 249, 610, 1280
MmeI TCCRAC 4 cut(s) 122, 535, 839, 942
MroXI GAANNNNTTC 2 cut(s) 116, 523
MseI TTAA 3 cut(s) 252, 348, 921
MslI CAYNNNNRTG 3 cut(s) 507, 636, 987
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 3 cut(s) 144, 284, 1181
MspR9I CCNGG 3 cut(s) 47, 285, 774
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 47, 774
MwoI GCNNNNNNNGC 3 cut(s) 416, 872, 1169
NciI CCSGG 1 cut(s) 285
NcoI CCATGG 3 cut(s) 356, 631, 867
NdeII GATC 5 cut(s) 124, 280, 840, 1063, 1080
NlaIV GGNNCC 4 cut(s) 14, 354, 472, 994
NmuCI GTSAC 2 cut(s) 970, 1283
NspI RCATGY 2 cut(s) 641, 1115
NspV TTCGAA 1 cut(s) 527
PagI TCATGA 1 cut(s) 502
PceI AGGCCT 1 cut(s) 37
PciI ACATGT 1 cut(s) 637
PctI GAATGC 1 cut(s) 568
PdmI GAANNNNTTC 2 cut(s) 116, 523
PfeI GAWTC 3 cut(s) 72, 132, 653
PflMI CCANNNNNTGG 1 cut(s) 480
PfoI TCCNGGA 1 cut(s) 772
PkrI GCNGC 8 cut(s) 79, 325, 412, 415, 418, 806, 874, 1174
PleI GAGTC 3 cut(s) 248, 610, 1280
PpsI GAGTC 3 cut(s) 248, 610, 1280
PpuMI RGGWCCY 3 cut(s) 13, 352, 1220
PscI ACATGT 1 cut(s) 637
PsiI TTATAA 1 cut(s) 1253
Psp5II RGGWCCY 3 cut(s) 13, 352, 1220
Psp6I CCWGG 2 cut(s) 45, 772
PspGI CCWGG 2 cut(s) 45, 772
PspN4I GGNNCC 4 cut(s) 14, 354, 472, 994
PspPI GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
PspPPI RGGWCCY 3 cut(s) 13, 352, 1220
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 585, 1304
RsaNI GTAC 2 cut(s) 584, 1303
RseI CAYNNNNRTG 3 cut(s) 507, 636, 987
SalI GTCGAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 252, 348, 921
SatI GCNGC 8 cut(s) 78, 324, 411, 414, 417, 805, 873, 1173
Sau3AI GATC 5 cut(s) 124, 280, 840, 1063, 1080
Sau96I GGNCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
SchI GAGTC 3 cut(s) 249, 610, 1280
ScrFI CCNGG 3 cut(s) 47, 285, 774
SduI GDGCHC 4 cut(s) 193, 290, 487, 1053
SfaNI GCATC 1 cut(s) 670
SfcI CTRYAG 1 cut(s) 210
SfuI TTCGAA 1 cut(s) 527
SinI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
SmiMI CAYNNNNRTG 3 cut(s) 507, 636, 987
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 6 cut(s) 147, 275, 305, 603, 678, 933
SseBI AGGCCT 1 cut(s) 37
SsiI CCGC 6 cut(s) 78, 323, 413, 419, 715, 1172
SspI AATATT 1 cut(s) 1196
StuI AGGCCT 1 cut(s) 37
StyD4I CCNGG 3 cut(s) 45, 283, 772
StyI CCWWGG 3 cut(s) 356, 631, 867
TaaI ACNGT 5 cut(s) 300, 341, 853, 1011, 1230
TaiI ACGT 2 cut(s) 390, 1281
TaqI TCGA 3 cut(s) 140, 279, 527
TasI AATT 6 cut(s) 147, 275, 305, 603, 678, 933
TatI WGTACW 1 cut(s) 1302
TauI GCSGC 4 cut(s) 80, 326, 416, 1175
TfiI GAWTC 3 cut(s) 72, 132, 653
Tru1I TTAA 3 cut(s) 252, 348, 921
Tru9I TTAA 3 cut(s) 252, 348, 921
TscAI CASTG 3 cut(s) 344, 856, 1288
TseFI GTSAC 2 cut(s) 970, 1283
TseI GCWGC 4 cut(s) 410, 416, 804, 872
Tsp45I GTSAC 2 cut(s) 970, 1283
TspDTI ATGAA 3 cut(s) 276, 443, 666
TspGWI ACGGA 2 cut(s) 654, 1089
TspRI CASTG 3 cut(s) 344, 856, 1288
Van91I CCANNNNNTGG 1 cut(s) 480
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 8 cut(s) 13, 352, 363, 471, 905, 992, 1117, 1220
XapI RAATTY 4 cut(s) 147, 275, 678, 933
XceI RCATGY 2 cut(s) 641, 1115
XcmI CCANNNNNNNNNTGG 4 cut(s) 339, 373, 629, 1100
XmiI GTMKAC 1 cut(s) 140
XmnI GAANNNNTTC 2 cut(s) 116, 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.