Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Reverse (-)

58218881 .. 58221607

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG358300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGAGTTGGGTCATCTCAGAATGTGGCCTAAAGCCTCTCCCTAGAATCTACCCTCAAACCAGAAATGGCCTGACCTCAAAACCCATTAGGCCATTGCTGCTCAGCAAAAGCAAGAATCTTGGTTCTGCTTTGAGGCTCTCAAATGGGTTTAGAGGGCAGAGTTGGGCACTCAATGTCAGTGCTCCACTGAATGTGGTAACTGTTGGAGAAGATAGTGTAAATGGGGTTGATCAAGATGGTGGGGAGTTTGACCCTGGTGCAGCTCCTCCCTTTAATTTGGGTGATATTCGGGCAGCAATTCCGAAGCATTGTTGGGTTAAGAATCCTTGGAAGTCTATGAGTTATGTTGTGAGGGATGTGGCTGTGGTTTTTGGCTTGGCGGCTGTGGCGGCTTACTTTAACAGTTGGGCTGTTTGGCCTCTTTACTGGTTTGCTCAGAGCACCATGTTCTGGGCTCTCTTTGTTCTTGGCCATGATTGTGGTCATGGAAGTTTCTCTAACAACCCAAAGCTGAATAGTGTGGTGGGTCATCTTCTTCATTCTTCAATCCTTGTCCCATACCATGGATGGAGAATAAGTCATAGAACTCATCATCAGAACCATGGTCATGTCGAAAATGATGAGTCTTGGCATCCGTTAACTGAGAAAACTTTCAAAAGTTTGGATAAGGTTACTCAGATATTGAGGTTTGCCTTGCCTTTCCCTATGCTCGCTTACCCCTTTTATCTGTGGAGTAGAAGTCCAGGAAAGAAAGGTTCTCATTATAATCCGAACAGCGATTTGTTTCTTCCAAATGAAAGGAAAGATATTATTACCTCCACTACCTGTTGGACTGCAATGGTTGCCGTGCTTGTTGGTCTGTCCTTTATAATGGGTCCAATCCAAATGCTTAAGCTTTATGGAGTTCCATACTGGGGGTTCGTCATATGGTTGGACTTGGTGACTTACTTGCATCACCATGGCCATGCGGACAAGCTTCCATGGTATCGTGGAAAGGTAAAGTATTCAACTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031090 GO:0031967 GO:0031975 GO:0032787 GO:0042170 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

339

Amino Acids

38.25

Weight (kDa)

9.45

Isoelectric Point (pI)

26.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	1 - 129	6.4e-50	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	136 - 331	1.3e-19	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	768, 872
AccB7I	CCANNNNNTGG	2 cut(s)	453, 566
AciI	CCGC	3 cut(s)	383, 392, 971
AcoI	YGGCCR	2 cut(s)	472, 964
AfiI	CCNNNNNNNGG	3 cut(s)	453, 566, 917
AflII	CTTAAG	1 cut(s)	893
AgsI	TTSAA	3 cut(s)	549, 658, 1011
AjnI	CCWGG	2 cut(s)	256, 745
AluBI	AGCT	4 cut(s)	266, 514, 898, 979
AluI	AGCT	4 cut(s)	266, 514, 898, 979
Alw21I	GWGCWC	2 cut(s)	187, 446
AoxI	GGCC	6 cut(s)	28, 70, 92, 419, 472, 964
ApeKI	GCWGC	3 cut(s)	100, 263, 296
Asp700I	GAANNNNTTC	1 cut(s)	653
AspS9I	GGNCC	1 cut(s)	878
AsuHPI	GGTGA	3 cut(s)	296, 950, 955
AvaII	GGWCC	1 cut(s)	878
BaeGI	GKGCMC	1 cut(s)	172
BalI	TGGCCA	2 cut(s)	474, 966
BanII	GRGCYC	1 cut(s)	460
Bbv12I	GWGCWC	2 cut(s)	187, 446
BbvI	GCAGC	3 cut(s)	87, 275, 308
BccI	CCATC	2 cut(s)	233, 564
BceAI	ACGGC	1 cut(s)	833
BciT130I	CCWGG	2 cut(s)	258, 747
BclI	TGATCA	1 cut(s)	232
BfaI	CTAG	1 cut(s)	45
BfrI	CTTAAG	1 cut(s)	893
BisI	GCNGC	5 cut(s)	101, 264, 297, 384, 393
BlpI	GCTNAGC	1 cut(s)	104
BlsI	GCNGC	5 cut(s)	102, 265, 298, 385, 394
Bme1390I	CCNGG	2 cut(s)	258, 747
Bme18I	GGWCC	1 cut(s)	878
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	1 cut(s)	879
BmrFI	CCNGG	2 cut(s)	258, 747
BmrI	ACTGGG	1 cut(s)	925
BmsI	GCATC	2 cut(s)	643, 964
BmuI	ACTGGG	1 cut(s)	925
Bpu1102I	GCTNAGC	1 cut(s)	104
BsaJI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BsaXI	ACNNNNNCTCC	4 cut(s)	565, 595, 727, 757
Bsc4I	CCNNNNNNNGG	3 cut(s)	453, 566, 917
Bse1I	ACTGG	2 cut(s)	434, 920
Bse3DI	GCAATG	2 cut(s)	95, 846
BseBI	CCWGG	2 cut(s)	258, 747
BseDI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BseGI	GGATG	3 cut(s)	364, 575, 634
BseLI	CCNNNNNNNGG	3 cut(s)	453, 566, 917
BseMI	GCAATG	2 cut(s)	95, 846
BseMII	CTCAG	5 cut(s)	33, 118, 452, 636, 692
BseNI	ACTGG	2 cut(s)	434, 920
BseRI	GAGGAG	1 cut(s)	258
BseSI	GKGCMC	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	87, 275, 308
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 966
BsiHKAI	GWGCWC	2 cut(s)	187, 446
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	453, 566, 917
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 966
Bsp1286I	GDGCHC	4 cut(s)	172, 187, 446, 460
Bsp143I	GATC	1 cut(s)	232
Bsp1720I	GCTNAGC	1 cut(s)	104
Bsp19I	CCATGG	4 cut(s)	565, 604, 961, 983
BspACI	CCGC	3 cut(s)	383, 392, 971
BspANI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 966
BspCNI	CTCAG	5 cut(s)	32, 117, 451, 637, 691
BspLI	GGNNCC	1 cut(s)	879
BspTI	CTTAAG	1 cut(s)	893
BsrDI	GCAATG	2 cut(s)	95, 846
BsrI	ACTGG	2 cut(s)	434, 920
BssECI	CCNNGG	6 cut(s)	256, 329, 565, 604, 961, 983
BssMI	GATC	1 cut(s)	232
BssT1I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
Bst2UI	CCWGG	2 cut(s)	258, 747
Bst4CI	ACNGT	2 cut(s)	205, 407
BstAFI	CTTAAG	1 cut(s)	893
BstAPI	GCANNNNNTGC	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	714
BstDEI	CTNAG	5 cut(s)	19, 104, 438, 645, 678
BstDSI	CCRYGG	4 cut(s)	565, 604, 961, 983
BstF5I	GGATG	3 cut(s)	364, 575, 634
BstKTI	GATC	1 cut(s)	235
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	4 cut(s)	100, 389, 392, 845
BstNI	CCWGG	2 cut(s)	258, 747
BstSCI	CCNGG	2 cut(s)	256, 745
BstSLI	GKGCMC	1 cut(s)	172
BstV1I	GCAGC	3 cut(s)	87, 275, 308
BstXI	CCANNNNNNTGG	1 cut(s)	482
BsuRI	GGCC	6 cut(s)	30, 72, 94, 421, 474, 966
BtgI	CCRYGG	4 cut(s)	565, 604, 961, 983
BtsCI	GGATG	3 cut(s)	364, 575, 634
BtsIMutI	CAGTG	2 cut(s)	187, 188
Cac8I	GCNNGC	1 cut(s)	714
Cfr13I	GGNCC	1 cut(s)	878
CviAII	CATG	9 cut(s)	448, 476, 488, 566, 605, 611, 962, 968, 984
DdeI	CTNAG	5 cut(s)	19, 104, 438, 645, 678
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	472, 964
Eco130I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
Eco24I	GRGCYC	1 cut(s)	460
Eco47I	GGWCC	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	256, 745
EcoT14I	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
EcoT38I	GRGCYC	1 cut(s)	460
ErhI	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
FaeI	CATG	9 cut(s)	451, 479, 491, 569, 608, 614, 965, 971, 987
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	9 cut(s)	447, 475, 487, 565, 604, 610, 961, 967, 983
FauNDI	CATATG	1 cut(s)	929
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	5 cut(s)	101, 264, 297, 384, 393
FokI	GGATG	3 cut(s)	371, 582, 621
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	5 cut(s)	101, 264, 297, 384, 393
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	5 cut(s)	101, 264, 297, 384, 393
HaeIII	GGCC	6 cut(s)	30, 72, 94, 421, 474, 966
Hin1II	CATG	9 cut(s)	451, 479, 491, 569, 608, 614, 965, 971, 987
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	2 cut(s)	896, 977
HinfI	GANTC	4 cut(s)	48, 118, 325, 626
HpaI	GTTAAC	1 cut(s)	642
HphI	GGTGA	3 cut(s)	296, 950, 955
Hpy166II	GTNNAC	1 cut(s)	642
Hpy188I	TCNGA	6 cut(s)	22, 306, 441, 600, 681, 774
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	1 cut(s)	642
HpyCH4III	ACNGT	2 cut(s)	205, 407
HpyCH4V	TGCA	3 cut(s)	263, 839, 955
HpyF10VI	GCNNNNNNNGC	4 cut(s)	100, 389, 392, 845
HpyF3I	CTNAG	5 cut(s)	19, 104, 438, 645, 678
Hsp92II	CATG	9 cut(s)	451, 479, 491, 569, 608, 614, 965, 971, 987
Ksp22I	TGATCA	1 cut(s)	232
KspAI	GTTAAC	1 cut(s)	642
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	2 cut(s)	190, 271
Lsp1109I	GCAGC	3 cut(s)	87, 275, 308
LweI	GCATC	2 cut(s)	643, 964
MaeI	CTAG	1 cut(s)	45
MaeIII	GTNAC	3 cut(s)	199, 673, 943
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	5 cut(s)	224, 527, 530, 537, 782
MhlI	GDGCHC	4 cut(s)	172, 187, 446, 460
MlsI	TGGCCA	2 cut(s)	474, 966
MluCI	AATT	2 cut(s)	277, 300
MluNI	TGGCCA	2 cut(s)	474, 966
MlyI	GAGTC	1 cut(s)	635
MmeI	TCCRAC	3 cut(s)	187, 812, 915
Mox20I	TGGCCA	2 cut(s)	474, 966
MroXI	GAANNNNTTC	1 cut(s)	653
MscI	TGGCCA	2 cut(s)	474, 966
MseI	TTAA	5 cut(s)	276, 321, 402, 641, 894
MslI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
Msp20I	TGGCCA	2 cut(s)	474, 966
MspCI	CTTAAG	1 cut(s)	893
MspR9I	CCNGG	2 cut(s)	258, 747
MvaI	CCWGG	2 cut(s)	258, 747
MwoI	GCNNNNNNNGC	4 cut(s)	100, 389, 392, 845
NcoI	CCATGG	4 cut(s)	565, 604, 961, 983
NdeI	CATATG	1 cut(s)	929
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	9 cut(s)	451, 479, 491, 569, 608, 614, 965, 971, 987
NlaIV	GGNNCC	1 cut(s)	879
NmuCI	GTSAC	1 cut(s)	943
PdmI	GAANNNNTTC	1 cut(s)	653
PfeI	GAWTC	3 cut(s)	48, 118, 325
PflMI	CCANNNNNTGG	2 cut(s)	453, 566
PfoI	TCCNGGA	1 cut(s)	745
PkrI	GCNGC	5 cut(s)	102, 265, 298, 385, 394
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PsiI	TTATAA	2 cut(s)	768, 872
Psp6I	CCWGG	2 cut(s)	256, 745
PspGI	CCWGG	2 cut(s)	256, 745
PspN4I	GGNNCC	1 cut(s)	879
PspPI	GGNCC	1 cut(s)	878
RseI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
SaqAI	TTAA	5 cut(s)	276, 321, 402, 641, 894
SatI	GCNGC	5 cut(s)	101, 264, 297, 384, 393
Sau3AI	GATC	1 cut(s)	232
Sau96I	GGNCC	1 cut(s)	878
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	2 cut(s)	258, 747
SduI	GDGCHC	4 cut(s)	172, 187, 446, 460
SfaNI	GCATC	2 cut(s)	643, 964
SinI	GGWCC	1 cut(s)	878
SmiMI	CAYNNNNRTG	4 cut(s)	480, 609, 960, 966
SmlI	CTYRAG	1 cut(s)	893
SmoI	CTYRAG	1 cut(s)	893
Sse9I	AATT	2 cut(s)	277, 300
SsiI	CCGC	3 cut(s)	383, 392, 971
SspMI	CTAG	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	256, 745
StyI	CCWWGG	5 cut(s)	329, 565, 604, 961, 983
TaaI	ACNGT	2 cut(s)	205, 407
TaqI	TCGA	1 cut(s)	615
TasI	AATT	2 cut(s)	277, 300
TauI	GCSGC	2 cut(s)	386, 395
TfiI	GAWTC	3 cut(s)	48, 118, 325
Tru1I	TTAA	5 cut(s)	276, 321, 402, 641, 894
Tru9I	TTAA	5 cut(s)	276, 321, 402, 641, 894
TscAI	CASTG	2 cut(s)	187, 195
TseFI	GTSAC	1 cut(s)	943
TseI	GCWGC	3 cut(s)	100, 263, 296
Tsp45I	GTSAC	1 cut(s)	943
TspDTI	ATGAA	2 cut(s)	530, 813
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	2 cut(s)	187, 195
Van91I	CCANNNNNTGG	2 cut(s)	453, 566
Vha464I	CTTAAG	1 cut(s)	893
VpaK11BI	GGWCC	1 cut(s)	878
XcmI	CCANNNNNNNNNTGG	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	653
XspI	CTAG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.