AT3G11170

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
3499537 .. 3502452
2916 bp
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UTR
Exon/CDS
Intron
AT3G11170.1

Sequence Viewer

Length: 1341 bp
ATGGCGAACTTGGTCTTATCAGAATGTGGTATACGACCTCTCCCCAGAATCTACACAACACCCAGATCCAATTTCCTCTCCAACAACAACAAATTCAGACCATCACTTTCTTCTTCTTCTTACAAAACATCATCATCTCCTCTGTCTTTTGGTCTGAATTCACGAGATGGGTTCACGAGGAATTGGGCGTTGAATGTGAGCACACCATTAACGACACCAATATTTGAGGAGTCTCCATTGGAGGAAGATAATAAACAGAGATTCGATCCAGGTGCGCCTCCTCCGTTCAATTTAGCTGATATTAGAGCAGCTATACCTAAGCATTGTTGGGTTAAGAATCCATGGAAGTCTTTGAGTTATGTCGTCAGAGACGTCGCTATCGTCTTTGCATTGGCTGCTGGAGCTGCTTACCTCAACAATTGGATTGTTTGGCCTCTCTATTGGCTCGCTCAAGGAACCATGTTTTGGGCTCTCTTTGTTCTTGGTCATGACTGTGGACATGGTAGTTTCTCAAATGATCCGAAGTTGAACAGTGTGGTCGGTCATCTTCTTCATTCCTCAATTCTGGTCCCATACCATGGCTGGAGAATTAGTCACAGAACTCACCACCAGAACCATGGACATGTTGAGAATGACGAATCTTGGCATCCTATGTCTGAGAAAATCTACAATACTTTGGACAAGCCGACTAGATTCTTTAGATTTACACTGCCTCTCGTGATGCTTGCATACCCTTTCTACTTGTGGGCTCGAAGTCCGGGGAAAAAGGGTTCTCATTACCATCCAGACAGTGACTTGTTCCTCCCTAAAGAGAGAAAGGATGTCCTCACTTCTACTGCTTGTTGGACTGCAATGGCTGCTCTGCTTGTTTGTCTCAACTTCACAATCGGTCCAATTCAAATGCTCAAACTTTATGGAATTCCTTACTGGATAAATGTAATGTGGTTGGACTTTGTGACTTACCTGCATCACCATGGTCATGAAGATAAGCTTCCTTGGTACCGTGGCAAGGAGTGGAGTTACCTGAGAGGAGGACTTACAACATTGGATCGTGACTACGGATTGATCAATAACATCCATCATGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTATTAGGGAAGTATTACAGGGAGCCTGATAAGTCTGGACCGTTGCCATTACATTTACTGGAAATTCTAGCGAAAAGTATAAAAGAAGATCATTACGTGAGCGACGAAGGAGAAGTTGTATACTATAAAGCAGATCCAAATCTCTATGGAGAGGTCAAAGTAAGAGCAGATTGA

Protein Analysis

446

Amino Acids

51.17

Weight (kDa)

8.15

Isoelectric Point (pI)

34.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 133 1.9e-49 Domain of unknown function (DUF3474)
FA_desaturase PF00487 141 - 396 8.1e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 972
Acc65I GGTACC 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 999
AccB7I CCANNNNNTGG 2 cut(s) 465, 578
AccI GTMKAC 2 cut(s) 31, 1287
AciI CCGC 1 cut(s) 1118
AclWI GGATC 6 cut(s) 60, 260, 512, 1056, 1117, 1295
AcsI RAATTY 4 cut(s) 92, 157, 918, 1230
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 1001
AfiI CCNNNNNNNGG 4 cut(s) 465, 578, 1009, 1172
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 4 cut(s) 193, 289, 529, 899
AjnI CCWGG 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 448, 480
AloI GAACNNNNNNTCC 2 cut(s) 754, 786
AluBI AGCT 5 cut(s) 296, 311, 404, 991, 1160
AluI AGCT 5 cut(s) 296, 311, 404, 991, 1160
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 3 cut(s) 237, 363, 878
AlwI GGATC 6 cut(s) 60, 260, 512, 1056, 1117, 1295
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 5 cut(s) 308, 395, 404, 857, 1157
ApoI RAATTY 4 cut(s) 92, 157, 918, 1230
Asp718I GGTACC 1 cut(s) 999
AspLEI GCGC 1 cut(s) 277
AspS9I GGNCC 3 cut(s) 568, 890, 1205
AsuC2I CCSGG 1 cut(s) 759
AsuHPI GGTGA 2 cut(s) 596, 962
AvaII GGWCC 3 cut(s) 568, 890, 1205
BanI GGYRCC 1 cut(s) 999
BanII GRGCYC 2 cut(s) 472, 751
BauI CACGAG 3 cut(s) 162, 175, 716
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 5 cut(s) 320, 382, 391, 844, 1169
BccI CCATC 4 cut(s) 109, 161, 789, 1086
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 1 cut(s) 1065
BcnI CCSGG 1 cut(s) 759
BcoDI GTCTC 3 cut(s) 237, 363, 878
BfaI CTAG 3 cut(s) 690, 1139, 1235
BfuAI ACCTGC 1 cut(s) 972
BisI GCNGC 5 cut(s) 309, 396, 405, 858, 1158
BlsI GCNGC 5 cut(s) 310, 397, 406, 859, 1159
Bme1390I CCNGG 2 cut(s) 270, 759
Bme18I GGWCC 3 cut(s) 568, 890, 1205
BmgT120I GGNCC 3 cut(s) 568, 890, 1205
BmiI GGNNCC 4 cut(s) 457, 570, 1001, 1191
BmrFI CCNGG 2 cut(s) 270, 759
BmsI GCATC 3 cut(s) 655, 711, 976
BpmI CTGGAG 2 cut(s) 420, 604
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 435
BpuMI CCSGG 1 cut(s) 759
BsaAI YACGTR 1 cut(s) 1264
BsaBI GATNNNNATC 1 cut(s) 1305
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 7 cut(s) 341, 577, 616, 758, 973, 995, 1003
BsaXI ACNNNNNCTCC 6 cut(s) 24, 54, 577, 607, 1269, 1299
Bsc4I CCNNNNNNNGG 4 cut(s) 465, 578, 1009, 1172
Bse1I ACTGG 3 cut(s) 932, 1166, 1230
Bse3DI GCAATG 1 cut(s) 858
Bse8I GATNNNNATC 1 cut(s) 1305
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 7 cut(s) 341, 577, 616, 758, 973, 995, 1003
BseGI GGATG 4 cut(s) 646, 781, 826, 1074
BseJI GATNNNNATC 1 cut(s) 1305
BseLI CCNNNNNNNGG 4 cut(s) 465, 578, 1009, 1172
BseMI GCAATG 1 cut(s) 858
BseMII CTCAG 2 cut(s) 648, 1016
BseNI ACTGG 3 cut(s) 932, 1166, 1230
BseRI GAGGAG 4 cut(s) 129, 242, 270, 1044
BseXI GCAGC 5 cut(s) 320, 382, 391, 844, 1169
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 999
BsiHKAI GWGCWC 1 cut(s) 203
BsiSI CCGG 1 cut(s) 758
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 4 cut(s) 465, 578, 1009, 1172
BsmAI GTCTC 3 cut(s) 237, 363, 878
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 1 cut(s) 554
BsnI GGCC 1 cut(s) 433
Bsp1286I GDGCHC 3 cut(s) 203, 472, 751
Bsp143I GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
Bsp19I CCATGG 4 cut(s) 341, 577, 616, 973
BspACI CCGC 1 cut(s) 1118
BspANI GGCC 1 cut(s) 433
BspCNI CTCAG 2 cut(s) 649, 1017
BspHI TCATGA 3 cut(s) 487, 979, 1081
BspLI GGNNCC 4 cut(s) 457, 570, 1001, 1191
BspMI ACCTGC 1 cut(s) 972
BspPI GGATC 6 cut(s) 60, 260, 512, 1056, 1117, 1295
BspT107I GGYRCC 1 cut(s) 999
BsrDI GCAATG 1 cut(s) 858
BsrI ACTGG 3 cut(s) 932, 1166, 1230
BssECI CCNNGG 7 cut(s) 341, 577, 616, 758, 973, 995, 1003
BssMI GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
BssNAI GTATAC 2 cut(s) 32, 1288
BssNI GRCGYC 1 cut(s) 372
BssSI CACGAG 3 cut(s) 162, 175, 716
BssT1I CCWWGG 5 cut(s) 341, 577, 616, 973, 995
Bst1107I GTATAC 2 cut(s) 32, 1288
Bst2BI CACGAG 3 cut(s) 162, 175, 716
Bst2UI CCWGG 1 cut(s) 270
Bst4CI ACNGT 5 cut(s) 494, 533, 791, 1004, 1209
BstACI GRCGYC 1 cut(s) 372
BstAPI GCANNNNNTGC 2 cut(s) 395, 857
BstBAI YACGTR 1 cut(s) 1264
BstC8I GCNNGC 2 cut(s) 447, 726
BstDEI CTNAG 3 cut(s) 318, 657, 1025
BstDSI CCRYGG 5 cut(s) 341, 577, 616, 973, 1003
BstF5I GGATG 4 cut(s) 646, 781, 826, 1074
BstHHI GCGC 1 cut(s) 277
BstKTI GATC 8 cut(s) 68, 268, 520, 1051, 1068, 1125, 1258, 1303
BstMAI GTCTC 3 cut(s) 237, 363, 878
BstMBI GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
BstMWI GCNNNNNNNGC 5 cut(s) 395, 401, 404, 857, 1154
BstNI CCWGG 1 cut(s) 270
BstNSI RCATGY 1 cut(s) 626
BstSCI CCNGG 2 cut(s) 268, 757
BstV1I GCAGC 5 cut(s) 320, 382, 391, 844, 1169
BstX2I RGATCY 3 cut(s) 65, 1122, 1300
BstXI CCANNNNNNTGG 1 cut(s) 617
BstYI RGATCY 3 cut(s) 65, 1122, 1300
BstZ17I GTATAC 2 cut(s) 32, 1288
BsuRI GGCC 1 cut(s) 433
BtgI CCRYGG 5 cut(s) 341, 577, 616, 973, 1003
BtsCI GGATG 4 cut(s) 646, 781, 826, 1074
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 3 cut(s) 538, 707, 796
BveI ACCTGC 1 cut(s) 972
Cac8I GCNNGC 2 cut(s) 447, 726
CciI TCATGA 3 cut(s) 487, 979, 1081
CfoI GCGC 1 cut(s) 277
Cfr13I GGNCC 3 cut(s) 568, 890, 1205
Csp6I GTAC 1 cut(s) 1000
CviQI GTAC 1 cut(s) 1000
DdeI CTNAG 3 cut(s) 318, 657, 1025
DpnI GATC 8 cut(s) 67, 267, 519, 1050, 1067, 1124, 1257, 1302
DpnII GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
Eco130I CCWWGG 5 cut(s) 341, 577, 616, 973, 995
Eco24I GRGCYC 2 cut(s) 472, 751
Eco47I GGWCC 3 cut(s) 568, 890, 1205
EcoRI GAATTC 2 cut(s) 157, 918
EcoRII CCWGG 1 cut(s) 268
EcoT14I CCWWGG 5 cut(s) 341, 577, 616, 973, 995
EcoT38I GRGCYC 2 cut(s) 472, 751
ErhI CCWWGG 5 cut(s) 341, 577, 616, 973, 995
Esp3I CGTCTC 1 cut(s) 363
FalI AAGNNNNNCTT 2 cut(s) 975, 1007
FaqI GGGAC 1 cut(s) 554
FauI CCCGC 1 cut(s) 1125
FbaI TGATCA 1 cut(s) 1065
FblI GTMKAC 2 cut(s) 31, 1287
Fnu4HI GCNGC 5 cut(s) 309, 396, 405, 858, 1158
FokI GGATG 4 cut(s) 633, 768, 833, 1061
FriOI GRGCYC 2 cut(s) 472, 751
Fsp4HI GCNGC 5 cut(s) 309, 396, 405, 858, 1158
FspBI CTAG 3 cut(s) 690, 1139, 1235
GlaI GCGC 1 cut(s) 276
GluI GCNGC 5 cut(s) 309, 396, 405, 858, 1158
GsuI CTGGAG 2 cut(s) 420, 604
HaeIII GGCC 1 cut(s) 433
HapII CCGG 1 cut(s) 758
HhaI GCGC 1 cut(s) 277
Hin1I GRCGYC 1 cut(s) 372
Hin6I GCGC 1 cut(s) 275
HinP1I GCGC 1 cut(s) 275
HindIII AAGCTT 1 cut(s) 989
HinfI GANTC 6 cut(s) 48, 230, 261, 337, 638, 693
HpaII CCGG 1 cut(s) 758
HphI GGTGA 2 cut(s) 596, 962
Hpy166II GTNNAC 4 cut(s) 32, 174, 497, 1288
Hpy188I TCNGA 6 cut(s) 22, 98, 156, 368, 522, 658
Hpy188III TCNNGA 9 cut(s) 162, 175, 488, 718, 785, 980, 1052, 1082, 1203
Hpy8I GTNNAC 4 cut(s) 32, 174, 497, 1288
Hpy99I CGWCG 2 cut(s) 377, 1274
HpyAV CCTTC 1 cut(s) 1268
HpyCH4III ACNGT 5 cut(s) 494, 533, 791, 1004, 1209
HpyCH4IV ACGT 2 cut(s) 372, 1263
HpyCH4V TGCA 4 cut(s) 389, 728, 851, 967
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 401, 404, 857, 1154
HpyF3I CTNAG 3 cut(s) 318, 657, 1025
HpySE526I ACGT 2 cut(s) 372, 1263
Hsp92I GRCGYC 1 cut(s) 372
HspAI GCGC 1 cut(s) 275
KpnI GGTACC 1 cut(s) 1003
Ksp22I TGATCA 1 cut(s) 1065
Kzo9I GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
LmnI GCTCC 2 cut(s) 401, 1189
Lsp1109I GCAGC 5 cut(s) 320, 382, 391, 844, 1169
LweI GCATC 3 cut(s) 655, 711, 976
MaeI CTAG 3 cut(s) 690, 1139, 1235
MaeII ACGT 2 cut(s) 372, 1263
MaeIII GTNAC 5 cut(s) 593, 791, 955, 1019, 1052
MalI GATC 8 cut(s) 67, 267, 519, 1050, 1067, 1124, 1257, 1302
MboI GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
MboII GAAGA 8 cut(s) 102, 105, 108, 257, 539, 542, 995, 1265
MfeI CAATTG 1 cut(s) 418
MflI RGATCY 3 cut(s) 65, 1122, 1300
MhlI GDGCHC 3 cut(s) 203, 472, 751
MlyI GAGTC 1 cut(s) 239
MmeI TCCRAC 3 cut(s) 105, 824, 927
MseI TTAA 2 cut(s) 209, 333
MslI CAYNNNNRTG 4 cut(s) 492, 621, 972, 978
MspI CCGG 1 cut(s) 758
MspR9I CCNGG 2 cut(s) 270, 759
MunI CAATTG 1 cut(s) 418
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 5 cut(s) 395, 401, 404, 857, 1154
NciI CCSGG 1 cut(s) 759
NcoI CCATGG 4 cut(s) 341, 577, 616, 973
NdeII GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
NlaIV GGNNCC 4 cut(s) 457, 570, 1001, 1191
NmuCI GTSAC 4 cut(s) 593, 791, 955, 1052
NspI RCATGY 1 cut(s) 626
PagI TCATGA 3 cut(s) 487, 979, 1081
PciI ACATGT 1 cut(s) 622
PcsI WCGNNNNNNNCGW 3 cut(s) 369, 378, 1269
PfeI GAWTC 5 cut(s) 48, 261, 337, 638, 693
PflMI CCANNNNNTGG 2 cut(s) 465, 578
PkrI GCNGC 5 cut(s) 310, 397, 406, 859, 1159
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 1264
PscI ACATGT 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 4 cut(s) 457, 570, 1001, 1191
PspPI GGNCC 3 cut(s) 568, 890, 1205
PsuI RGATCY 3 cut(s) 65, 1122, 1300
RsaI GTAC 1 cut(s) 1001
RsaNI GTAC 1 cut(s) 1000
RseI CAYNNNNRTG 4 cut(s) 492, 621, 972, 978
SaqAI TTAA 2 cut(s) 209, 333
SatI GCNGC 5 cut(s) 309, 396, 405, 858, 1158
Sau3AI GATC 8 cut(s) 65, 265, 517, 1048, 1065, 1122, 1255, 1300
Sau96I GGNCC 3 cut(s) 568, 890, 1205
SchI GAGTC 1 cut(s) 239
ScrFI CCNGG 2 cut(s) 270, 759
SduI GDGCHC 3 cut(s) 203, 472, 751
SfaNI GCATC 3 cut(s) 655, 711, 976
SinI GGWCC 3 cut(s) 568, 890, 1205
SmiMI CAYNNNNRTG 4 cut(s) 492, 621, 972, 978
SmlI CTYRAG 1 cut(s) 450
SmoI CTYRAG 1 cut(s) 450
SsiI CCGC 1 cut(s) 1118
SspI AATATT 1 cut(s) 222
SspMI CTAG 3 cut(s) 690, 1139, 1235
StyD4I CCNGG 2 cut(s) 268, 757
StyI CCWWGG 5 cut(s) 341, 577, 616, 973, 995
TaaI ACNGT 5 cut(s) 494, 533, 791, 1004, 1209
TaiI ACGT 2 cut(s) 375, 1266
TaqI TCGA 2 cut(s) 264, 751
TaqII GACCGA 2 cut(s) 530, 878
TfiI GAWTC 5 cut(s) 48, 261, 337, 638, 693
Tru1I TTAA 2 cut(s) 209, 333
Tru9I TTAA 2 cut(s) 209, 333
TscAI CASTG 3 cut(s) 538, 714, 796
TseFI GTSAC 4 cut(s) 593, 791, 955, 1052
TseI GCWGC 5 cut(s) 308, 395, 404, 857, 1157
Tsp45I GTSAC 4 cut(s) 593, 791, 955, 1052
TspDTI ATGAA 2 cut(s) 542, 996
TspGWI ACGGA 2 cut(s) 273, 1074
TspRI CASTG 3 cut(s) 538, 714, 796
Van91I CCANNNNNTGG 2 cut(s) 465, 578
VpaK11BI GGWCC 3 cut(s) 568, 890, 1205
XapI RAATTY 4 cut(s) 92, 157, 918, 1230
XceI RCATGY 1 cut(s) 626
XcmI CCANNNNNNNNNTGG 3 cut(s) 579, 614, 1085
XmiI GTMKAC 2 cut(s) 31, 1287
XspI CTAG 3 cut(s) 690, 1139, 1235
ZraI GACGTC 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.