MD12G1168600.v1.1

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Reverse (-)
24900958 .. 24903916
2959 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1168600.v1.1.491

Sequence Viewer

Length: 1362 bp
ATGGCGAGTTGGGTCCTCTCTGAATGCGGCCTAAAGCCTCTCCCGCAAGTTTGGAACCGACCCAGAACCGCAGTTTGCTCTAGCTACCGGTCAAAAGTTCGGATTTTTCGGTCAAACCAGAGCTCGGCGGATCTGAGATTGGATTCGACCAAAATCGCAGGTGGGTTGTTTAGAGAGAGAAGATGGGATCTTAACGTGAGCGCTCCGGTGAGGGTAGCTTCTGTTGAAGAGGAGGAGGAGAGAGTTAACGGCGTTAATGGCGGCGGAGATGGAGAAGAGGAGGTGGGATTTGATCCGGGTGCGCCGCCGCCGTTCAAATTAGCCGATGTTAAAGCTGCCATTCCGAAGCATTGTTGGGTTAGGGACCCGTGGAGGTCAATGAGCTATGTGGTGAGGGATGTGGCGGTGGTTTTCGGGTTGGCTGCGGCTGCGGTTTATGTGAACAAGTGGTTTGTTTGGCCTCTGTATTGGGCTGCTCAGGGGACAATGTTTTGGGCTATCTTTGTTCTTGGCCATGATTGTGGCCATGGAAGCTTTTCGAATAATCCCAAGCTAAACAGTGTTGTGGGGCATCTCTTGCATTCTTCAATTCTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCATCATCAAAACCATGGTCATGTTGAGAATGACGAGTCATGGCACCCGTTGTCTGAAAAAATCTACAAGAAATTGGATAGCATGACACGAATTTTGCGCTTCACCGTTCCTTTTCCCATGCTTGCTTATCCTTTCTATCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCCCACTTTGACCCGAAGAGCGATCTATTTGTCCCGAATGAGAGGAAAGATGTGATCACTTCCACTGTATGTTGGACAGCAATGGCTGCTTTACTTGTGGGATTATCGTTTGTAATGGGTCCTGTTCAAGTGCTTAAGCTCTACGGCATTCCCTACTGGGTTTTTGTCATGTGGCTGGATTTGGTAACTTACTTGCATCACCATGGGCACGAAGACAAACTACCATGGTATCGAGGGAAGGAATGGAGTTATCTGAGGGGAGGGCTTACGACACTGGATCGGGACTACGGATTGATCAATAACATCCACCACGACATCGGAACCCATGTGGTTCATCATCTTTTTCCTCAAATCCCCCACTACCACTTGGTTGAAGCAACTGAGGCAGCAAAGCCGGTATTCGGGAACTACTACAGAGAGCCGAAGAAATCAGGACCTCTACCATTTCACTTGCTTGGAAGTTTTATCAAAAGCTTGAAAAAGGACCACTATGTGAGTGACAATGGCGATGTTGTGTACTACCAAACTGACCCTAGCTTTGGTGGCTTTCCTCCATCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

454

Amino Acids

51.61

Weight (kDa)

8.74

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 142 3.6e-58 Domain of unknown function (DUF3474)
FA_desaturase PF00487 150 - 404 1.3e-31 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 149
Acc36I ACCTGC 1 cut(s) 149
AccB1I GGYRCC 1 cut(s) 672
AclWI GGATC 4 cut(s) 138, 195, 287, 1083
AcoI YGGCCR 2 cut(s) 511, 523
AcsI RAATTY 1 cut(s) 720
AdeI CACNNNGTG 1 cut(s) 1291
AfaI GTAC 2 cut(s) 597, 1316
AfeI AGCGCT 1 cut(s) 202
AfiI CCNNNNNNNGG 4 cut(s) 124, 605, 1199, 1337
AflII CTTAAG 1 cut(s) 932
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 6 cut(s) 227, 316, 588, 926, 1172, 1276
AjnI CCWGG 1 cut(s) 784
Alw21I GWGCWC 1 cut(s) 125
AlwI GGATC 4 cut(s) 138, 195, 287, 1083
Aor51HI AGCGCT 1 cut(s) 202
AoxI GGCC 4 cut(s) 28, 458, 511, 523
ApeKI GCWGC 6 cut(s) 335, 422, 428, 473, 884, 1184
ApoI RAATTY 1 cut(s) 720
ArsI GACNNNNNNTTYG 6 cut(s) 631, 663, 706, 738, 1319, 1351
AsiGI ACCGGT 1 cut(s) 87
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 3 cut(s) 203, 304, 729
AspS9I GGNCC 5 cut(s) 13, 364, 917, 1232, 1282
AsuC2I CCSGG 1 cut(s) 297
AsuHPI GGTGA 4 cut(s) 220, 403, 724, 989
AsuII TTCGAA 1 cut(s) 539
AvaII GGWCC 5 cut(s) 13, 364, 917, 1232, 1282
BaeGI GKGCMC 1 cut(s) 1008
BaeI ACNNNNGTAYC 2 cut(s) 1010, 1043
BalI TGGCCA 2 cut(s) 513, 525
BanI GGYRCC 1 cut(s) 672
BanII GRGCYC 1 cut(s) 125
BarI GAAGNNNNNNTAC 2 cut(s) 1002, 1034
BbsI GAAGAC 1 cut(s) 1017
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 6 cut(s) 322, 409, 415, 460, 871, 1196
BccI CCATC 4 cut(s) 177, 263, 603, 1360
BceAI ACGGC 3 cut(s) 265, 295, 958
BciT130I CCWGG 1 cut(s) 786
BclI TGATCA 2 cut(s) 852, 1092
BcnI CCSGG 1 cut(s) 297
BfaI CTAG 2 cut(s) 81, 1332
BfmI CTRYAG 1 cut(s) 1210
BfoI RGCGCY 1 cut(s) 204
BfrI CTTAAG 1 cut(s) 932
BfuAI ACCTGC 1 cut(s) 149
Bme1390I CCNGG 2 cut(s) 297, 786
Bme18I GGWCC 5 cut(s) 13, 364, 917, 1232, 1282
BmgT120I GGNCC 5 cut(s) 13, 364, 917, 1232, 1282
BmiI GGNNCC 8 cut(s) 14, 56, 365, 366, 674, 799, 918, 1120
BmrFI CCNGG 2 cut(s) 297, 786
BmrI ACTGGG 1 cut(s) 964
BmsI GCATC 2 cut(s) 580, 1003
BmuI ACTGGG 1 cut(s) 964
BpiI GAAGAC 1 cut(s) 1017
Bpu10I CCTNAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 539
BpuMI CCSGG 1 cut(s) 297
BsaJI CCNNGG 5 cut(s) 368, 526, 643, 1000, 1022
BsaWI WCCGGW 2 cut(s) 87, 205
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 605, 1199, 1337
Bse118I RCCGGY 2 cut(s) 87, 1192
Bse1I ACTGG 3 cut(s) 799, 959, 1077
Bse3DI GCAATG 1 cut(s) 885
BseBI CCWGG 1 cut(s) 786
BseDI CCNNGG 5 cut(s) 368, 526, 643, 1000, 1022
BseGI GGATG 3 cut(s) 403, 614, 1101
BseLI CCNNNNNNNGG 4 cut(s) 124, 605, 1199, 1337
BseMI GCAATG 1 cut(s) 885
BseMII CTCAG 4 cut(s) 125, 491, 1043, 1170
BseNI ACTGG 3 cut(s) 799, 959, 1077
BseRI GAGGAG 4 cut(s) 245, 248, 251, 293
BseSI GKGCMC 1 cut(s) 1008
BseXI GCAGC 6 cut(s) 322, 409, 415, 460, 871, 1196
BshFI GGCC 4 cut(s) 30, 460, 513, 525
BshNI GGYRCC 1 cut(s) 672
BshTI ACCGGT 1 cut(s) 87
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 4 cut(s) 88, 206, 296, 1193
BslFI GGGAC 4 cut(s) 377, 496, 815, 1094
BslI CCNNNNNNNGG 4 cut(s) 124, 605, 1199, 1337
BsmFI GGGAC 4 cut(s) 377, 496, 815, 1094
BsmI GAATGC 3 cut(s) 29, 580, 945
BsnI GGCC 4 cut(s) 30, 460, 513, 525
Bsp119I TTCGAA 1 cut(s) 539
Bsp1286I GDGCHC 2 cut(s) 125, 1008
Bsp143I GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
Bsp19I CCATGG 4 cut(s) 526, 643, 1000, 1022
BspANI GGCC 4 cut(s) 30, 460, 513, 525
BspCNI CTCAG 4 cut(s) 126, 490, 1044, 1171
BspLI GGNNCC 8 cut(s) 14, 56, 365, 366, 674, 799, 918, 1120
BspMI ACCTGC 1 cut(s) 149
BspPI GGATC 4 cut(s) 138, 195, 287, 1083
BspQI GCTCTTC 1 cut(s) 809
BspT104I TTCGAA 1 cut(s) 539
BspT107I GGYRCC 1 cut(s) 672
BspTI CTTAAG 1 cut(s) 932
BsrDI GCAATG 1 cut(s) 885
BsrFI RCCGGY 2 cut(s) 87, 1192
BsrI ACTGG 3 cut(s) 799, 959, 1077
BssAI RCCGGY 2 cut(s) 87, 1192
BssECI CCNNGG 5 cut(s) 368, 526, 643, 1000, 1022
BssMI GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
BssT1I CCWWGG 4 cut(s) 526, 643, 1000, 1022
Bst2UI CCWGG 1 cut(s) 786
Bst4CI ACNGT 3 cut(s) 560, 736, 865
Bst6I CTCTTC 3 cut(s) 222, 270, 809
BstAFI CTTAAG 1 cut(s) 932
BstAPI GCANNNNNTGC 2 cut(s) 577, 884
BstBI TTCGAA 1 cut(s) 539
BstC8I GCNNGC 1 cut(s) 753
BstDEI CTNAG 4 cut(s) 134, 477, 1052, 1179
BstDSI CCRYGG 5 cut(s) 368, 526, 643, 1000, 1022
BstF5I GGATG 3 cut(s) 403, 614, 1101
BstH2I RGCGCY 1 cut(s) 204
BstHHI GCGC 3 cut(s) 203, 304, 729
BstKTI GATC 7 cut(s) 133, 190, 295, 823, 855, 1078, 1095
BstMBI GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
BstMWI GCNNNNNNNGC 8 cut(s) 43, 258, 428, 531, 577, 884, 1181, 1341
BstNI CCWGG 1 cut(s) 786
BstSCI CCNGG 2 cut(s) 295, 784
BstSFI CTRYAG 1 cut(s) 1210
BstSLI GKGCMC 1 cut(s) 1008
BstV1I GCAGC 6 cut(s) 322, 409, 415, 460, 871, 1196
BstV2I GAAGAC 1 cut(s) 1017
BstX2I RGATCY 2 cut(s) 130, 187
BstXI CCANNNNNNTGG 1 cut(s) 521
BstYI RGATCY 2 cut(s) 130, 187
BsuRI GGCC 4 cut(s) 30, 460, 513, 525
BtgI CCRYGG 5 cut(s) 368, 526, 643, 1000, 1022
BtgZI GCGATG 1 cut(s) 1320
BtsCI GGATG 3 cut(s) 403, 614, 1101
BtsIMutI CAGTG 3 cut(s) 565, 861, 1070
BveI ACCTGC 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 753
CfoI GCGC 3 cut(s) 203, 304, 729
Cfr10I RCCGGY 2 cut(s) 87, 1192
Cfr13I GGNCC 5 cut(s) 13, 364, 917, 1232, 1282
Csp6I GTAC 2 cut(s) 596, 1315
CspAI ACCGGT 1 cut(s) 87
CviQI GTAC 2 cut(s) 596, 1315
DdeI CTNAG 4 cut(s) 134, 477, 1052, 1179
DpnI GATC 7 cut(s) 132, 189, 294, 822, 854, 1077, 1094
DpnII GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
DraIII CACNNNGTG 1 cut(s) 1291
EaeI YGGCCR 2 cut(s) 511, 523
Eam1104I CTCTTC 3 cut(s) 222, 270, 809
EarI CTCTTC 3 cut(s) 222, 270, 809
EciI GGCGGA 2 cut(s) 143, 279
Ecl136II GAGCTC 1 cut(s) 123
Eco130I CCWWGG 4 cut(s) 526, 643, 1000, 1022
Eco24I GRGCYC 1 cut(s) 125
Eco47I GGWCC 5 cut(s) 13, 364, 917, 1232, 1282
Eco47III AGCGCT 1 cut(s) 202
Eco53kI GAGCTC 1 cut(s) 123
EcoICRI GAGCTC 1 cut(s) 123
EcoO109I RGGNCCY 4 cut(s) 13, 364, 917, 1232
EcoRII CCWGG 1 cut(s) 784
EcoT14I CCWWGG 4 cut(s) 526, 643, 1000, 1022
EcoT38I GRGCYC 1 cut(s) 125
ErhI CCWWGG 4 cut(s) 526, 643, 1000, 1022
FaqI GGGAC 4 cut(s) 377, 496, 815, 1094
FauI CCCGC 1 cut(s) 51
FbaI TGATCA 2 cut(s) 852, 1092
FokI GGATG 3 cut(s) 410, 621, 1088
FriOI GRGCYC 1 cut(s) 125
FspBI CTAG 2 cut(s) 81, 1332
GlaI GCGC 3 cut(s) 202, 303, 728
HaeII RGCGCY 1 cut(s) 204
HaeIII GGCC 4 cut(s) 30, 460, 513, 525
HapII CCGG 4 cut(s) 88, 206, 296, 1193
HhaI GCGC 3 cut(s) 203, 304, 729
Hin6I GCGC 3 cut(s) 201, 302, 727
HinP1I GCGC 3 cut(s) 201, 302, 727
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HindIII AAGCTT 2 cut(s) 532, 1270
HinfI GANTC 3 cut(s) 143, 628, 665
HpaI GTTAAC 1 cut(s) 247
HpaII CCGG 4 cut(s) 88, 206, 296, 1193
HphI GGTGA 4 cut(s) 220, 403, 724, 989
Hpy166II GTNNAC 3 cut(s) 247, 442, 1315
Hpy188I TCNGA 7 cut(s) 22, 102, 135, 345, 685, 1053, 1118
Hpy188III TCNNGA 4 cut(s) 832, 1079, 1201, 1230
Hpy8I GTNNAC 3 cut(s) 247, 442, 1315
HpyAV CCTTC 1 cut(s) 1030
HpyCH4III ACNGT 3 cut(s) 560, 736, 865
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 580, 994
HpyF10VI GCNNNNNNNGC 8 cut(s) 43, 258, 428, 531, 577, 884, 1181, 1341
HpyF3I CTNAG 4 cut(s) 134, 477, 1052, 1179
HpySE526I ACGT 1 cut(s) 195
HspAI GCGC 3 cut(s) 201, 302, 727
KflI GGGWCCC 1 cut(s) 364
Ksp22I TGATCA 2 cut(s) 852, 1092
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
LguI GCTCTTC 1 cut(s) 809
LmnI GCTCC 1 cut(s) 208
Lsp1109I GCAGC 6 cut(s) 322, 409, 415, 460, 871, 1196
LweI GCATC 2 cut(s) 580, 1003
MaeI CTAG 2 cut(s) 81, 1332
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 982, 1295
MalI GATC 7 cut(s) 132, 189, 294, 822, 854, 1077, 1094
MboI GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
MboII GAAGA 7 cut(s) 192, 239, 287, 576, 826, 1022, 1234
MflI RGATCY 2 cut(s) 130, 187
MhlI GDGCHC 2 cut(s) 125, 1008
MlsI TGGCCA 2 cut(s) 513, 525
MluCI AATT 6 cut(s) 317, 588, 615, 701, 720, 1357
MluNI TGGCCA 2 cut(s) 513, 525
MlyI GAGTC 2 cut(s) 622, 674
MmeI TCCRAC 1 cut(s) 851
Mox20I TGGCCA 2 cut(s) 513, 525
MroXI GAANNNNTTC 1 cut(s) 535
MscI TGGCCA 2 cut(s) 513, 525
MseI TTAA 6 cut(s) 192, 246, 255, 330, 933, 1360
MslI CAYNNNNRTG 3 cut(s) 519, 648, 999
Msp20I TGGCCA 2 cut(s) 513, 525
MspCI CTTAAG 1 cut(s) 932
MspI CCGG 4 cut(s) 88, 206, 296, 1193
MspR9I CCNGG 2 cut(s) 297, 786
Mva1269I GAATGC 3 cut(s) 29, 580, 945
MvaI CCWGG 1 cut(s) 786
MwoI GCNNNNNNNGC 8 cut(s) 43, 258, 428, 531, 577, 884, 1181, 1341
NciI CCSGG 1 cut(s) 297
NcoI CCATGG 4 cut(s) 526, 643, 1000, 1022
NdeII GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
NlaIV GGNNCC 8 cut(s) 14, 56, 365, 366, 674, 799, 918, 1120
NmeAIII GCCGAG 1 cut(s) 104
NmuCI GTSAC 1 cut(s) 1295
NspV TTCGAA 1 cut(s) 539
PaqCI CACCTGC 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 809
PctI GAATGC 3 cut(s) 29, 580, 945
PdmI GAANNNNTTC 1 cut(s) 535
PfeI GAWTC 1 cut(s) 143
PfoI TCCNGGA 1 cut(s) 784
PinAI ACCGGT 1 cut(s) 87
PleI GAGTC 2 cut(s) 622, 673
PpsI GAGTC 2 cut(s) 622, 673
PpuMI RGGWCCY 4 cut(s) 13, 364, 917, 1232
Psp124BI GAGCTC 1 cut(s) 125
Psp5II RGGWCCY 4 cut(s) 13, 364, 917, 1232
Psp6I CCWGG 1 cut(s) 784
PspGI CCWGG 1 cut(s) 784
PspN4I GGNNCC 8 cut(s) 14, 56, 365, 366, 674, 799, 918, 1120
PspPI GGNCC 5 cut(s) 13, 364, 917, 1232, 1282
PspPPI RGGWCCY 4 cut(s) 13, 364, 917, 1232
PsuI RGATCY 2 cut(s) 130, 187
RsaI GTAC 2 cut(s) 597, 1316
RsaNI GTAC 2 cut(s) 596, 1315
RseI CAYNNNNRTG 3 cut(s) 519, 648, 999
SacI GAGCTC 1 cut(s) 125
SapI GCTCTTC 1 cut(s) 809
SaqAI TTAA 6 cut(s) 192, 246, 255, 330, 933, 1360
Sau3AI GATC 7 cut(s) 130, 187, 292, 820, 852, 1075, 1092
Sau96I GGNCC 5 cut(s) 13, 364, 917, 1232, 1282
SchI GAGTC 2 cut(s) 622, 674
ScrFI CCNGG 2 cut(s) 297, 786
SduI GDGCHC 2 cut(s) 125, 1008
SfaNI GCATC 2 cut(s) 580, 1003
SfcI CTRYAG 1 cut(s) 1210
SfuI TTCGAA 1 cut(s) 539
SinI GGWCC 5 cut(s) 13, 364, 917, 1232, 1282
SmiMI CAYNNNNRTG 3 cut(s) 519, 648, 999
SmlI CTYRAG 1 cut(s) 932
SmoI CTYRAG 1 cut(s) 932
Sse9I AATT 6 cut(s) 317, 588, 615, 701, 720, 1357
SspMI CTAG 2 cut(s) 81, 1332
SstI GAGCTC 1 cut(s) 125
StyD4I CCNGG 2 cut(s) 295, 784
StyI CCWWGG 4 cut(s) 526, 643, 1000, 1022
TaaI ACNGT 3 cut(s) 560, 736, 865
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 146, 539, 1030
TaqII GACCGA 1 cut(s) 99
TasI AATT 6 cut(s) 317, 588, 615, 701, 720, 1357
TatI WGTACW 1 cut(s) 1314
TauI GCSGC 5 cut(s) 30, 264, 307, 310, 428
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 6 cut(s) 192, 246, 255, 330, 933, 1360
Tru9I TTAA 6 cut(s) 192, 246, 255, 330, 933, 1360
TscAI CASTG 3 cut(s) 565, 868, 1077
TseFI GTSAC 1 cut(s) 1295
TseI GCWGC 6 cut(s) 335, 422, 428, 473, 884, 1184
Tsp45I GTSAC 1 cut(s) 1295
TspDTI ATGAA 1 cut(s) 1121
TspGWI ACGGA 1 cut(s) 1101
TspRI CASTG 3 cut(s) 565, 868, 1077
Vha464I CTTAAG 1 cut(s) 932
VpaK11BI GGWCC 5 cut(s) 13, 364, 917, 1232, 1282
XapI RAATTY 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 2 cut(s) 81, 1332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.