pycom07g20170

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
22351698 .. 22354159
2462 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g20170.5

Sequence Viewer

Length: 1341 bp
ATGGCGACTTGGGTCCTCTCAGAATGCACCCTAAAACCTCTCCCTAAATTCTACTCACATCCCAGAAACGCCCTCGCCTCAAAACCGTCCGCCCTCCGGCCATTCCCCAATGTGAGGAGCACCAATCTTTTGGGGTTCAGAGGGGCAAAATGGTCACTCAATGTGAGTGCCCCATTGCGGGTCCCATCCGTGGATGTGGAAGACAATGGGAGAGTGAGCACAAATGGGGTTGGAGACGGTGGTGAATTTGACCCCGGTGCCCCTCCCCCCTTCAATTTGCGTGACATCAGAGCTGCCATTCCCCAGCATTGCTGGGTTAAGGACCCCTGGAAATCTATGAGCTATGTGGTCAGAGATGTGGCTGTGGTTTTTGGGATGGCGGCGCTTGCAGCTTACTTTAACAATTGGGCTGTTTGGCCTCTCTACTGGTTTGCTCAGGGCACCATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGTGGCCACGGAAGCTTTTCGAATAATCCGAAGCTGAATAGCGTGGTCGGTCATCTTCTTCATTCTTCAATCCTTGTCCCATACCATGGATGGAGAATTAGCCACAGAACTCATCATCAGAACCATGGACACGTCGAAAATGACGAGTCTTGGCATCCGTTGCCTGAGAAAATTTACAAGAGTTTGGACAAGATGACTCAGATATTTAGGTTCACCTTGCCATTCCCCATGCTTGCTTATCCTTTCTATCTGGTGAGCCTTCCGCTTCTCGCATCTTGCTTCTCTCCGGGAAAGAGTGGCTCCCATTATGATCCAAACAGCGAATTGTTTCTCCCAAATGAAAGGAAAGATATCATTACTTCCACTGCCTGTTGGGCAGCAATGGCTGCGCTGCTAGTCGGTCTGTCTTTCACAATGGGACCTGTCCAAGTGCTTAAGCTCTACGGCGTTCCATACTGGATGTTTGTCTTGTGGTTGGACTTAGTGACTTACTTGCATCACCATGGCCACGAGGACAAGCTTCCATGGTATCGTGGGAAGGAATGGAGTTATCTAAGAGGAGGATTGACAACCATTGATCGCGACTACGGATGGATCAACAACATCCATCATGATATCGGAACTCATGTCATACATCATCTCTTCCCTCAAATCCCACATTACAACTTAATAGAAGCAACGGAGGCAGCTAAGCCTGTGCTTGGGAAGTACTACAGAGAACCGAAAAAATCATGGCCTCTCCCACTTCACCTGCTGGGAGTCCTTGTAAGAAGCTTTAAACGCGATCATTACGTGAGTGACACTGGGGATGTTGTATATTATCAAACCGATAAGGAACTTGCGGGGTCAGCGGCATCAGAATGA

Protein Analysis

447

Amino Acids

50.65

Weight (kDa)

8.61

Isoelectric Point (pI)

37.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1236
Acc36I ACCTGC 1 cut(s) 1236
AccB1I GGYRCC 2 cut(s) 257, 440
AccB7I CCANNNNNTGG 2 cut(s) 450, 563
AccII CGCG 2 cut(s) 1059, 1260
AciI CCGC 6 cut(s) 90, 178, 380, 740, 1319, 1328
AclWI GGATC 2 cut(s) 782, 1079
AcoI YGGCCR 3 cut(s) 98, 481, 982
AcsI RAATTY 3 cut(s) 47, 245, 648
AfaI GTAC 1 cut(s) 1187
AfiI CCNNNNNNNGG 8 cut(s) 96, 114, 177, 178, 190, 450, 563, 1178
AflII CTTAAG 1 cut(s) 911
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 2 cut(s) 274, 546
AjiI CACGTC 1 cut(s) 610
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 9 cut(s) 293, 342, 392, 492, 511, 916, 997, 1166, 1251
AluI AGCT 9 cut(s) 293, 342, 392, 492, 511, 916, 997, 1166, 1251
Alw21I GWGCWC 2 cut(s) 122, 221
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 782, 1079
AoxI GGCC 5 cut(s) 98, 416, 481, 982, 1211
ApeKI GCWGC 6 cut(s) 293, 389, 854, 863, 868, 1163
ApoI RAATTY 3 cut(s) 47, 245, 648
Asp700I GAANNNNTTC 2 cut(s) 493, 804
AspLEI GCGC 2 cut(s) 385, 868
AspS9I GGNCC 4 cut(s) 13, 181, 322, 896
AsuC2I CCSGG 2 cut(s) 255, 765
AsuHPI GGTGA 5 cut(s) 254, 682, 742, 968, 1217
AsuII TTCGAA 1 cut(s) 497
AvaII GGWCC 4 cut(s) 13, 181, 322, 896
BaeGI GKGCMC 3 cut(s) 172, 262, 443
BalI TGGCCA 2 cut(s) 483, 984
BanI GGYRCC 2 cut(s) 257, 440
BanII GRGCYC 1 cut(s) 457
BauI CACGAG 1 cut(s) 986
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 2 cut(s) 122, 221
BbvI GCAGC 6 cut(s) 280, 401, 850, 855, 866, 1175
BccI CCATC 5 cut(s) 193, 370, 561, 1062, 1092
BceAI ACGGC 1 cut(s) 937
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 2 cut(s) 255, 765
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 872
BfmI CTRYAG 1 cut(s) 1189
BfoI RGCGCY 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 911
BfuAI ACCTGC 1 cut(s) 1236
BglI GCCNNNNNGGC 1 cut(s) 851
BisI GCNGC 8 cut(s) 294, 381, 390, 855, 864, 869, 1164, 1329
BlpI GCTNAGC 1 cut(s) 1167
BlsI GCNGC 8 cut(s) 295, 382, 391, 856, 865, 870, 1165, 1330
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 3 cut(s) 255, 328, 765
Bme18I GGWCC 4 cut(s) 13, 181, 322, 896
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 4 cut(s) 13, 181, 322, 896
BmiI GGNNCC 8 cut(s) 14, 182, 183, 259, 324, 442, 778, 897
BmrFI CCNGG 3 cut(s) 255, 328, 765
BmrI ACTGGG 1 cut(s) 1290
BmsI GCATC 3 cut(s) 640, 758, 982
BmuI ACTGGG 1 cut(s) 1290
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 207
Bpu10I CCTNAGC 1 cut(s) 435
Bpu1102I GCTNAGC 1 cut(s) 1167
Bpu14I TTCGAA 1 cut(s) 497
BpuMI CCSGG 2 cut(s) 255, 765
BsaAI YACGTR 1 cut(s) 1270
BsaJI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 979, 1001
BsaXI ACNNNNNCTCC 2 cut(s) 1227, 1257
Bsc4I CCNNNNNNNGG 8 cut(s) 96, 114, 177, 178, 190, 450, 563, 1178
Bse1I ACTGG 3 cut(s) 431, 938, 1285
Bse3DI GCAATG 3 cut(s) 173, 307, 864
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 979, 1001
BseLI CCNNNNNNNGG 8 cut(s) 96, 114, 177, 178, 190, 450, 563, 1178
BseMI GCAATG 3 cut(s) 173, 307, 864
BseMII CTCAG 4 cut(s) 33, 449, 633, 689
BseNI ACTGG 3 cut(s) 431, 938, 1285
BseRI GAGGAG 2 cut(s) 130, 1050
BseSI GKGCMC 3 cut(s) 172, 262, 443
BseXI GCAGC 6 cut(s) 280, 401, 850, 855, 866, 1175
BseYI CCCAGC 3 cut(s) 303, 312, 1231
Bsh1236I CGCG 2 cut(s) 1059, 1260
BshFI GGCC 5 cut(s) 100, 418, 483, 984, 1213
BshNI GGYRCC 2 cut(s) 257, 440
BsiHKAI GWGCWC 2 cut(s) 122, 221
BsiSI CCGG 3 cut(s) 97, 255, 764
BslFI GGGAC 3 cut(s) 167, 539, 909
BslI CCNNNNNNNGG 8 cut(s) 96, 114, 177, 178, 190, 450, 563, 1178
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 167, 539, 909
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 5 cut(s) 100, 418, 483, 984, 1213
Bsp119I TTCGAA 1 cut(s) 497
Bsp1286I GDGCHC 6 cut(s) 122, 172, 221, 262, 443, 457
Bsp143I GATC 4 cut(s) 787, 1054, 1071, 1261
Bsp1720I GCTNAGC 1 cut(s) 1167
Bsp19I CCATGG 4 cut(s) 562, 601, 979, 1001
Bsp68I TCGCGA 1 cut(s) 1059
BspACI CCGC 6 cut(s) 90, 178, 380, 740, 1319, 1328
BspANI GGCC 5 cut(s) 100, 418, 483, 984, 1213
BspCNI CTCAG 4 cut(s) 32, 448, 634, 688
BspFNI CGCG 2 cut(s) 1059, 1260
BspHI TCATGA 1 cut(s) 1087
BspLI GGNNCC 8 cut(s) 14, 182, 183, 259, 324, 442, 778, 897
BspMI ACCTGC 1 cut(s) 1236
BspPI GGATC 2 cut(s) 782, 1079
BspT104I TTCGAA 1 cut(s) 497
BspT107I GGYRCC 2 cut(s) 257, 440
BspTI CTTAAG 1 cut(s) 911
BsrDI GCAATG 3 cut(s) 173, 307, 864
BsrI ACTGG 3 cut(s) 431, 938, 1285
BssECI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 979, 1001
BssMI GATC 4 cut(s) 787, 1054, 1071, 1261
BssSI CACGAG 1 cut(s) 986
BssT1I CCWWGG 4 cut(s) 562, 601, 979, 1001
Bst2BI CACGAG 1 cut(s) 986
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 87, 239
Bst6I CTCTTC 1 cut(s) 1124
BstAFI CTTAAG 1 cut(s) 911
BstAPI GCANNNNNTGC 2 cut(s) 637, 863
BstBAI YACGTR 1 cut(s) 1270
BstBI TTCGAA 1 cut(s) 497
BstC8I GCNNGC 2 cut(s) 387, 711
BstDEI CTNAG 7 cut(s) 19, 435, 642, 675, 958, 1031, 1167
BstDSI CCRYGG 6 cut(s) 189, 484, 562, 601, 979, 1001
BstFNI CGCG 2 cut(s) 1059, 1260
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 2 cut(s) 385, 868
BstKTI GATC 4 cut(s) 790, 1057, 1074, 1264
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 4 cut(s) 787, 1054, 1071, 1261
BstNI CCWGG 1 cut(s) 328
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 253, 326, 763
BstSFI CTRYAG 1 cut(s) 1189
BstSLI GKGCMC 3 cut(s) 172, 262, 443
BstUI CGCG 2 cut(s) 1059, 1260
BstV1I GCAGC 6 cut(s) 280, 401, 850, 855, 866, 1175
BstV2I GAAGAC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 5 cut(s) 100, 418, 483, 984, 1213
BtgI CCRYGG 6 cut(s) 189, 484, 562, 601, 979, 1001
BtrI CACGTC 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 2 cut(s) 840, 1278
BtuMI TCGCGA 1 cut(s) 1059
BveI ACCTGC 1 cut(s) 1236
Cac8I GCNNGC 2 cut(s) 387, 711
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 2 cut(s) 385, 868
Cfr13I GGNCC 4 cut(s) 13, 181, 322, 896
Csp6I GTAC 1 cut(s) 1186
CviQI GTAC 1 cut(s) 1186
DdeI CTNAG 7 cut(s) 19, 435, 642, 675, 958, 1031, 1167
DpnI GATC 4 cut(s) 789, 1056, 1073, 1263
DpnII GATC 4 cut(s) 787, 1054, 1071, 1261
DraI TTTAAA 1 cut(s) 1255
EaeI YGGCCR 3 cut(s) 98, 481, 982
Eam1104I CTCTTC 1 cut(s) 1124
EarI CTCTTC 1 cut(s) 1124
EciI GGCGGA 1 cut(s) 79
Eco130I CCWWGG 4 cut(s) 562, 601, 979, 1001
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 2 cut(s) 829, 1093
Eco47I GGWCC 4 cut(s) 13, 181, 322, 896
EcoO109I RGGNCCY 4 cut(s) 13, 181, 322, 896
EcoRII CCWGG 1 cut(s) 326
EcoRV GATATC 2 cut(s) 829, 1093
EcoT14I CCWWGG 4 cut(s) 562, 601, 979, 1001
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 4 cut(s) 562, 601, 979, 1001
Esp3I CGTCTC 1 cut(s) 228
FaqI GGGAC 3 cut(s) 167, 539, 909
FauI CCCGC 2 cut(s) 171, 1312
Fnu4HI GCNGC 8 cut(s) 294, 381, 390, 855, 864, 869, 1164, 1329
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 8 cut(s) 294, 381, 390, 855, 864, 869, 1164, 1329
FspBI CTAG 1 cut(s) 872
GlaI GCGC 2 cut(s) 384, 867
GluI GCNGC 8 cut(s) 294, 381, 390, 855, 864, 869, 1164, 1329
GsaI CCCAGC 3 cut(s) 307, 316, 1235
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 5 cut(s) 100, 418, 483, 984, 1213
HapII CCGG 3 cut(s) 97, 255, 764
HhaI GCGC 2 cut(s) 385, 868
Hin6I GCGC 2 cut(s) 383, 866
HinP1I GCGC 2 cut(s) 383, 866
HindIII AAGCTT 3 cut(s) 490, 995, 1249
HinfI GANTC 3 cut(s) 623, 673, 1236
HpaII CCGG 3 cut(s) 97, 255, 764
HphI GGTGA 5 cut(s) 254, 682, 742, 968, 1217
Hpy166II GTNNAC 1 cut(s) 690
Hpy188I TCNGA 9 cut(s) 22, 140, 290, 353, 507, 597, 678, 1097, 1336
Hpy188III TCNNGA 2 cut(s) 1058, 1088
Hpy8I GTNNAC 1 cut(s) 690
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 3 cut(s) 280, 746, 1009
HpyCH4III ACNGT 2 cut(s) 87, 239
HpyCH4IV ACGT 2 cut(s) 609, 1269
HpyCH4V TGCA 3 cut(s) 27, 389, 973
HpyF3I CTNAG 7 cut(s) 19, 435, 642, 675, 958, 1031, 1167
HpySE526I ACGT 2 cut(s) 609, 1269
HspAI GCGC 2 cut(s) 383, 866
KflI GGGWCCC 1 cut(s) 181
Kzo9I GATC 4 cut(s) 787, 1054, 1071, 1261
LmnI GCTCC 2 cut(s) 117, 782
Lsp1109I GCAGC 6 cut(s) 280, 401, 850, 855, 866, 1175
LweI GCATC 3 cut(s) 640, 758, 982
MaeI CTAG 1 cut(s) 872
MaeII ACGT 2 cut(s) 609, 1269
MaeIII GTNAC 4 cut(s) 153, 281, 961, 1274
MalI GATC 4 cut(s) 789, 1056, 1073, 1263
MboI GATC 4 cut(s) 787, 1054, 1071, 1261
MboII GAAGA 5 cut(s) 212, 524, 527, 534, 1111
MfeI CAATTG 1 cut(s) 403
MhlI GDGCHC 6 cut(s) 122, 172, 221, 262, 443, 457
MlsI TGGCCA 2 cut(s) 483, 984
MluCI AATT 7 cut(s) 47, 245, 274, 403, 573, 648, 800
MluNI TGGCCA 2 cut(s) 483, 984
MlyI GAGTC 3 cut(s) 632, 667, 1245
MmeI TCCRAC 2 cut(s) 211, 933
Mox20I TGGCCA 2 cut(s) 483, 984
MroXI GAANNNNTTC 2 cut(s) 493, 804
MscI TGGCCA 2 cut(s) 483, 984
MseI TTAA 5 cut(s) 318, 399, 912, 1145, 1254
MslI CAYNNNNRTG 3 cut(s) 477, 978, 1336
Msp20I TGGCCA 2 cut(s) 483, 984
MspA1I CMGCKG 1 cut(s) 1328
MspCI CTTAAG 1 cut(s) 911
MspI CCGG 3 cut(s) 97, 255, 764
MspR9I CCNGG 3 cut(s) 255, 328, 765
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 2 cut(s) 1059, 1260
NciI CCSGG 2 cut(s) 255, 765
NcoI CCATGG 4 cut(s) 562, 601, 979, 1001
NdeII GATC 4 cut(s) 787, 1054, 1071, 1261
NlaIV GGNNCC 8 cut(s) 14, 182, 183, 259, 324, 442, 778, 897
NmuCI GTSAC 4 cut(s) 153, 281, 961, 1274
NruI TCGCGA 1 cut(s) 1059
NspV TTCGAA 1 cut(s) 497
PagI TCATGA 1 cut(s) 1087
PaqCI CACCTGC 1 cut(s) 1236
PcsI WCGNNNNNNNCGW 2 cut(s) 503, 618
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 2 cut(s) 493, 804
PflMI CCANNNNNTGG 2 cut(s) 450, 563
PfoI TCCNGGA 1 cut(s) 763
PkrI GCNGC 8 cut(s) 295, 382, 391, 856, 865, 870, 1165, 1330
PleI GAGTC 3 cut(s) 631, 667, 1244
PpsI GAGTC 3 cut(s) 631, 667, 1244
Ppu21I YACGTR 1 cut(s) 1270
PpuMI RGGWCCY 4 cut(s) 13, 181, 322, 896
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 4 cut(s) 13, 181, 322, 896
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 3 cut(s) 303, 312, 1231
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 8 cut(s) 14, 182, 183, 259, 324, 442, 778, 897
PspPI GGNCC 4 cut(s) 13, 181, 322, 896
PspPPI RGGWCCY 4 cut(s) 13, 181, 322, 896
RruI TCGCGA 1 cut(s) 1059
RsaI GTAC 1 cut(s) 1187
RsaNI GTAC 1 cut(s) 1186
RseI CAYNNNNRTG 3 cut(s) 477, 978, 1336
SaqAI TTAA 5 cut(s) 318, 399, 912, 1145, 1254
SatI GCNGC 8 cut(s) 294, 381, 390, 855, 864, 869, 1164, 1329
Sau3AI GATC 4 cut(s) 787, 1054, 1071, 1261
Sau96I GGNCC 4 cut(s) 13, 181, 322, 896
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 3 cut(s) 632, 667, 1245
ScrFI CCNGG 3 cut(s) 255, 328, 765
SduI GDGCHC 6 cut(s) 122, 172, 221, 262, 443, 457
SfaNI GCATC 3 cut(s) 640, 758, 982
SfcI CTRYAG 1 cut(s) 1189
SfuI TTCGAA 1 cut(s) 497
SinI GGWCC 4 cut(s) 13, 181, 322, 896
SmiMI CAYNNNNRTG 3 cut(s) 477, 978, 1336
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
Sse9I AATT 7 cut(s) 47, 245, 274, 403, 573, 648, 800
SsiI CCGC 6 cut(s) 90, 178, 380, 740, 1319, 1328
SspMI CTAG 1 cut(s) 872
StyD4I CCNGG 3 cut(s) 253, 326, 763
StyI CCWWGG 4 cut(s) 562, 601, 979, 1001
TaaI ACNGT 2 cut(s) 87, 239
TaiI ACGT 2 cut(s) 612, 1272
TaqI TCGA 2 cut(s) 497, 612
TaqII GACCGA 2 cut(s) 515, 866
TasI AATT 7 cut(s) 47, 245, 274, 403, 573, 648, 800
TatI WGTACW 1 cut(s) 1185
TauI GCSGC 2 cut(s) 383, 1331
Tru1I TTAA 5 cut(s) 318, 399, 912, 1145, 1254
Tru9I TTAA 5 cut(s) 318, 399, 912, 1145, 1254
TscAI CASTG 2 cut(s) 847, 1285
TseFI GTSAC 4 cut(s) 153, 281, 961, 1274
TseI GCWGC 6 cut(s) 293, 389, 854, 863, 868, 1163
Tsp45I GTSAC 4 cut(s) 153, 281, 961, 1274
TspDTI ATGAA 2 cut(s) 527, 831
TspGWI ACGGA 5 cut(s) 178, 501, 624, 1080, 1172
TspRI CASTG 2 cut(s) 847, 1285
Van91I CCANNNNNTGG 2 cut(s) 450, 563
Vha464I CTTAAG 1 cut(s) 911
VpaK11BI GGWCC 4 cut(s) 13, 181, 322, 896
XapI RAATTY 3 cut(s) 47, 245, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XmnI GAANNNNTTC 2 cut(s) 493, 804
XspI CTAG 1 cut(s) 872
ZrmI AGTACT 1 cut(s) 1187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.