Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Reverse (-)

26139692 .. 26142710

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G278800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGCGGCGAGTTGGGTTCTCTCAGAATGTGGCTTAAAGCCTCTCCCTCAAAATTTTCATAGACCCACAGCCGGATTTTCCTCTAACCACCCAGCAAAAGTTCGAGTTTTTCGGTCGAGCAAGAGCGTGATAGATCTAAGATTGGCTTCAGCCAAAATTTCGAGTGCGTGCTTTAGAGGGAGAAGCTGGGGTCTGAAAGTGAGTGCTCCATTAAAAGTTGCTTCTATTGAAGACGAGAAAGAGAGAGTCAATGGTGTTAATGGCGTTGGAGATGAAGAAGAGCTGGAATTTGATCCAGGTGCACCACCACCGTTTAAATTGGCTGACATTAAAGCAGCCATTCCGAAGCATTGTTGGGTTAAGGACCCGTGGAAGTCAATGAGCTATGTGGTAAGGGATGTGCTGGTGGTTTTTGGATTGGCTGCAGCGGCGGCTTATACAAACAAGTGGTTCGTTTGGCCTCTGTATTGGGCTGCTCAGGGGACAATGTTTTGGGCTCTCTTTGTTCTTGGACATGATTGTGGCCATGGAAGCTTTTCAAATAATCCCAAGCTAAACAGTGTGGCGGGGCATCTCTTGCATTCTTCAATTCTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCATCATCAAAACCATGGCCATGTTGAGAATGATGAATCATGGCACCCGTTATCTGAGAGAATTTACAAGAAATTGGATAACATGACACGGATTTTGCGGTTCACCGTTCCTTTTCCCATGCTTGCATACCCTTTCTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCACTTTCACCCAAACAGCGACCTGTTTGTCCCAAATGAGAGGAAAGATGTGATCACTTCCACTTTGTGTTGGACAGCAATGGCTGCTTTGCTTGTGGGGTTGTCCTTTGTAATGGGTCCTATTCAATTGCTTAAGCTCTATGGCATTCCCTACTGGGTGTTTGTCATGTGGCTGGATTTGGTAACTTACTTGCATCACCATGGCCATGAAGAAAAATTACCATGGTATAGAGGAAAGGAGTGGAGTTATCTAAGGGGAGGGCTTACCACACTTGATCGTGACTACGGATTGATCAATAACATCCACCATGACATAGGCACCCATGTGGTTCATCATCTTTTTCCTCAAATACCCCATTACCATTTAGTTGAAGCAACTGAAGCAGCTAAGCCAGTATTTGGGAAATATTACAGAGAGCCAAAGAAATCAGGGCCTCTACCGTTTCACCTGCTTGGGAGTTTTATTAGAAGCTTGAAGAAAGACCACTATGTCAATGACAATGGGGATGTTGTGTACTACCAAACTGACCCTGATTTTGGTGGCTTTCCAAAATCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

454

Amino Acids

51.6

Weight (kDa)

9.16

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1257
AasI	GACNNNNNNGTC	2 cut(s)	827, 1289
Acc36I	ACCTGC	1 cut(s)	1257
AccB1I	GGYRCC	2 cut(s)	672, 1118
AccB7I	CCANNNNNTGG	1 cut(s)	1199
AciI	CCGC	5 cut(s)	5, 428, 431, 566, 727
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	3 cut(s)	523, 646, 1003
AcsI	RAATTY	4 cut(s)	52, 156, 287, 690
AcuI	CTGAAG	2 cut(s)	132, 1200
AdeI	CACNNNGTG	1 cut(s)	867
AfaI	GTAC	2 cut(s)	597, 1316
AfiI	CCNNNNNNNGG	4 cut(s)	71, 605, 1199, 1337
AflII	CTTAAG	1 cut(s)	932
AgsI	TTSAA	6 cut(s)	230, 540, 588, 926, 1172, 1276
AjnI	CCWGG	2 cut(s)	295, 784
AleI	CACNNNNGTG	1 cut(s)	1124
AluBI	AGCT	8 cut(s)	186, 283, 384, 534, 553, 937, 1187, 1272
AluI	AGCT	8 cut(s)	186, 283, 384, 534, 553, 937, 1187, 1272
Alw21I	GWGCWC	2 cut(s)	208, 304
Alw44I	GTGCAC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	5 cut(s)	458, 523, 646, 1003, 1232
ApaLI	GTGCAC	1 cut(s)	300
ApeKI	GCWGC	6 cut(s)	335, 422, 425, 473, 884, 1184
ApoI	RAATTY	4 cut(s)	52, 156, 287, 690
ArsI	GACNNNNNNTTYG	4 cut(s)	706, 738, 1319, 1351
Asp700I	GAANNNNTTC	1 cut(s)	535
AspS9I	GGNCC	3 cut(s)	364, 917, 1232
AsuHPI	GGTGA	4 cut(s)	724, 800, 989, 1238
AvaII	GGWCC	2 cut(s)	364, 917
BaeGI	GKGCMC	1 cut(s)	304
BalI	TGGCCA	3 cut(s)	525, 648, 1005
BanI	GGYRCC	2 cut(s)	672, 1118
BanII	GRGCYC	1 cut(s)	499
BarI	GAAGNNNNNNTAC	2 cut(s)	1002, 1034
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	2 cut(s)	208, 304
BbvI	GCAGC	6 cut(s)	347, 409, 437, 460, 871, 1196
BccI	CCATC	1 cut(s)	603
BciT130I	CCWGG	2 cut(s)	297, 786
BclI	TGATCA	2 cut(s)	852, 1092
BfmI	CTRYAG	1 cut(s)	423
BfrI	CTTAAG	1 cut(s)	932
BfuAI	ACCTGC	1 cut(s)	1257
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	9 cut(s)	6, 336, 423, 426, 429, 432, 474, 885, 1185
BlpI	GCTNAGC	1 cut(s)	1188
BlsI	GCNGC	9 cut(s)	7, 337, 424, 427, 430, 433, 475, 886, 1186
Bme1390I	CCNGG	2 cut(s)	297, 786
Bme18I	GGWCC	2 cut(s)	364, 917
BmgT120I	GGNCC	3 cut(s)	364, 917, 1232
BmiI	GGNNCC	4 cut(s)	366, 674, 918, 1120
BmrFI	CCNGG	2 cut(s)	297, 786
BmrI	ACTGGG	1 cut(s)	964
BmsI	GCATC	2 cut(s)	580, 1003
BmuI	ACTGGG	1 cut(s)	964
BpiI	GAAGAC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	1188
BsaJI	CCNNGG	5 cut(s)	368, 526, 643, 1000, 1022
Bsc4I	CCNNNNNNNGG	4 cut(s)	71, 605, 1199, 1337
Bse1I	ACTGG	3 cut(s)	799, 959, 1193
Bse3DI	GCAATG	1 cut(s)	885
BseBI	CCWGG	2 cut(s)	297, 786
BseDI	CCNNGG	5 cut(s)	368, 526, 643, 1000, 1022
BseGI	GGATG	4 cut(s)	403, 614, 1101, 1312
BseLI	CCNNNNNNNGG	4 cut(s)	71, 605, 1199, 1337
BseMI	GCAATG	1 cut(s)	885
BseMII	CTCAG	3 cut(s)	36, 491, 675
BseNI	ACTGG	3 cut(s)	799, 959, 1193
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	6 cut(s)	347, 409, 437, 460, 871, 1196
BseYI	CCCAGC	2 cut(s)	91, 186
Bsh1285I	CGRYCG	1 cut(s)	116
BshFI	GGCC	5 cut(s)	460, 525, 648, 1005, 1234
BshNI	GGYRCC	2 cut(s)	672, 1118
BsiEI	CGRYCG	1 cut(s)	116
BsiHKAI	GWGCWC	2 cut(s)	208, 304
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	2 cut(s)	496, 815
BslI	CCNNNNNNNGG	4 cut(s)	71, 605, 1199, 1337
BsmFI	GGGAC	2 cut(s)	496, 815
BsmI	GAATGC	2 cut(s)	580, 945
BsnI	GGCC	5 cut(s)	460, 525, 648, 1005, 1234
Bsp1286I	GDGCHC	3 cut(s)	208, 304, 499
Bsp143I	GATC	5 cut(s)	133, 292, 852, 1075, 1092
Bsp1720I	GCTNAGC	1 cut(s)	1188
Bsp19I	CCATGG	4 cut(s)	526, 643, 1000, 1022
BspACI	CCGC	5 cut(s)	5, 428, 431, 566, 727
BspANI	GGCC	5 cut(s)	460, 525, 648, 1005, 1234
BspCNI	CTCAG	3 cut(s)	35, 490, 676
BspLI	GGNNCC	4 cut(s)	366, 674, 918, 1120
BspMAI	CTGCAG	1 cut(s)	427
BspMI	ACCTGC	1 cut(s)	1257
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	273
BspT107I	GGYRCC	2 cut(s)	672, 1118
BspTI	CTTAAG	1 cut(s)	932
BsrDI	GCAATG	1 cut(s)	885
BsrI	ACTGG	3 cut(s)	799, 959, 1193
BssECI	CCNNGG	5 cut(s)	368, 526, 643, 1000, 1022
BssMI	GATC	5 cut(s)	133, 292, 852, 1075, 1092
BssT1I	CCWWGG	4 cut(s)	526, 643, 1000, 1022
Bst2UI	CCWGG	2 cut(s)	297, 786
Bst4CI	ACNGT	4 cut(s)	312, 560, 736, 1242
Bst6I	CTCTTC	1 cut(s)	273
BstAFI	CTTAAG	1 cut(s)	932
BstAPI	GCANNNNNTGC	2 cut(s)	577, 884
BstC8I	GCNNGC	2 cut(s)	169, 753
BstDEI	CTNAG	6 cut(s)	22, 137, 477, 684, 1052, 1188
BstDSI	CCRYGG	5 cut(s)	368, 526, 643, 1000, 1022
BstF5I	GGATG	4 cut(s)	403, 614, 1101, 1312
BstKTI	GATC	5 cut(s)	136, 295, 855, 1078, 1095
BstMBI	GATC	5 cut(s)	133, 292, 852, 1075, 1092
BstMCI	CGRYCG	1 cut(s)	116
BstMWI	GCNNNNNNNGC	6 cut(s)	428, 431, 531, 577, 884, 1181
BstNI	CCWGG	2 cut(s)	297, 786
BstSCI	CCNGG	2 cut(s)	295, 784
BstSFI	CTRYAG	1 cut(s)	423
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	6 cut(s)	347, 409, 437, 460, 871, 1196
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	5 cut(s)	460, 525, 648, 1005, 1234
BtgI	CCRYGG	5 cut(s)	368, 526, 643, 1000, 1022
BtsCI	GGATG	4 cut(s)	403, 614, 1101, 1312
BtsIMutI	CAGTG	1 cut(s)	565
BveI	ACCTGC	1 cut(s)	1257
Cac8I	GCNNGC	2 cut(s)	169, 753
Cfr13I	GGNCC	3 cut(s)	364, 917, 1232
Csp6I	GTAC	2 cut(s)	596, 1315
CviQI	GTAC	2 cut(s)	596, 1315
DdeI	CTNAG	6 cut(s)	22, 137, 477, 684, 1052, 1188
DpnI	GATC	5 cut(s)	135, 294, 854, 1077, 1094
DpnII	GATC	5 cut(s)	133, 292, 852, 1075, 1092
DraI	TTTAAA	1 cut(s)	316
DraIII	CACNNNGTG	1 cut(s)	867
DrdI	GACNNNNNNGTC	2 cut(s)	827, 1289
DseDI	GACNNNNNNGTC	2 cut(s)	827, 1289
EaeI	YGGCCR	3 cut(s)	523, 646, 1003
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco130I	CCWWGG	4 cut(s)	526, 643, 1000, 1022
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	364, 917
Eco57I	CTGAAG	2 cut(s)	132, 1200
EcoO109I	RGGNCCY	3 cut(s)	364, 917, 1232
EcoRII	CCWGG	2 cut(s)	295, 784
EcoT14I	CCWWGG	4 cut(s)	526, 643, 1000, 1022
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	4 cut(s)	526, 643, 1000, 1022
FalI	AAGNNNNNCTT	2 cut(s)	130, 162
FaqI	GGGAC	2 cut(s)	496, 815
FauI	CCCGC	1 cut(s)	559
FbaI	TGATCA	2 cut(s)	852, 1092
Fnu4HI	GCNGC	9 cut(s)	6, 336, 423, 426, 429, 432, 474, 885, 1185
FokI	GGATG	4 cut(s)	410, 621, 1088, 1319
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	9 cut(s)	6, 336, 423, 426, 429, 432, 474, 885, 1185
GluI	GCNGC	9 cut(s)	6, 336, 423, 426, 429, 432, 474, 885, 1185
GsaI	CCCAGC	2 cut(s)	95, 190
HaeIII	GGCC	5 cut(s)	460, 525, 648, 1005, 1234
HapII	CCGG	1 cut(s)	72
HindIII	AAGCTT	2 cut(s)	532, 1270
HinfI	GANTC	3 cut(s)	246, 628, 665
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	4 cut(s)	724, 800, 989, 1238
Hpy166II	GTNNAC	3 cut(s)	302, 732, 1315
Hpy188I	TCNGA	4 cut(s)	25, 195, 345, 685
Hpy188III	TCNNGA	1 cut(s)	1079
Hpy8I	GTNNAC	3 cut(s)	302, 732, 1315
HpyCH4III	ACNGT	4 cut(s)	312, 560, 736, 1242
HpyCH4V	TGCA	5 cut(s)	302, 425, 580, 755, 994
HpyF10VI	GCNNNNNNNGC	6 cut(s)	428, 431, 531, 577, 884, 1181
HpyF3I	CTNAG	6 cut(s)	22, 137, 477, 684, 1052, 1188
Ksp22I	TGATCA	2 cut(s)	852, 1092
Kzo9I	GATC	5 cut(s)	133, 292, 852, 1075, 1092
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	211
Lsp1109I	GCAGC	6 cut(s)	347, 409, 437, 460, 871, 1196
LweI	GCATC	2 cut(s)	580, 1003
MaeIII	GTNAC	2 cut(s)	982, 1079
MalI	GATC	5 cut(s)	135, 294, 854, 1077, 1094
MboI	GATC	5 cut(s)	133, 292, 852, 1075, 1092
MboII	GAAGA	6 cut(s)	242, 287, 290, 576, 1022, 1288
MfeI	CAATTG	1 cut(s)	926
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	3 cut(s)	208, 304, 499
MlsI	TGGCCA	3 cut(s)	525, 648, 1005
MluNI	TGGCCA	3 cut(s)	525, 648, 1005
MlyI	GAGTC	2 cut(s)	255, 622
MmeI	TCCRAC	2 cut(s)	247, 851
Mox20I	TGGCCA	3 cut(s)	525, 648, 1005
MroXI	GAANNNNTTC	1 cut(s)	535
MscI	TGGCCA	3 cut(s)	525, 648, 1005
MseI	TTAA	7 cut(s)	35, 212, 258, 315, 330, 360, 933
MslI	CAYNNNNRTG	5 cut(s)	519, 648, 999, 1005, 1124
Msp20I	TGGCCA	3 cut(s)	525, 648, 1005
MspA1I	CMGCKG	1 cut(s)	428
MspCI	CTTAAG	1 cut(s)	932
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	2 cut(s)	297, 786
MunI	CAATTG	1 cut(s)	926
Mva1269I	GAATGC	2 cut(s)	580, 945
MvaI	CCWGG	2 cut(s)	297, 786
MwoI	GCNNNNNNNGC	6 cut(s)	428, 431, 531, 577, 884, 1181
NcoI	CCATGG	4 cut(s)	526, 643, 1000, 1022
NdeII	GATC	5 cut(s)	133, 292, 852, 1075, 1092
NlaIV	GGNNCC	4 cut(s)	366, 674, 918, 1120
NmuCI	GTSAC	1 cut(s)	1079
OliI	CACNNNNGTG	1 cut(s)	1124
PaqCI	CACCTGC	1 cut(s)	1257
PciSI	GCTCTTC	1 cut(s)	273
PctI	GAATGC	2 cut(s)	580, 945
PdmI	GAANNNNTTC	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	665
PflMI	CCANNNNNTGG	1 cut(s)	1199
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	9 cut(s)	7, 337, 424, 427, 430, 433, 475, 886, 1186
PleI	GAGTC	2 cut(s)	254, 622
PpsI	GAGTC	2 cut(s)	254, 622
PpuMI	RGGWCCY	2 cut(s)	364, 917
Psp5II	RGGWCCY	2 cut(s)	364, 917
Psp6I	CCWGG	2 cut(s)	295, 784
PspFI	CCCAGC	2 cut(s)	91, 186
PspGI	CCWGG	2 cut(s)	295, 784
PspN4I	GGNNCC	4 cut(s)	366, 674, 918, 1120
PspPI	GGNCC	3 cut(s)	364, 917, 1232
PspPPI	RGGWCCY	2 cut(s)	364, 917
PstI	CTGCAG	1 cut(s)	427
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	2 cut(s)	597, 1316
RsaNI	GTAC	2 cut(s)	596, 1315
RseI	CAYNNNNRTG	5 cut(s)	519, 648, 999, 1005, 1124
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	7 cut(s)	35, 212, 258, 315, 330, 360, 933
SatI	GCNGC	9 cut(s)	6, 336, 423, 426, 429, 432, 474, 885, 1185
Sau3AI	GATC	5 cut(s)	133, 292, 852, 1075, 1092
Sau96I	GGNCC	3 cut(s)	364, 917, 1232
SchI	GAGTC	2 cut(s)	255, 622
ScrFI	CCNGG	2 cut(s)	297, 786
SduI	GDGCHC	3 cut(s)	208, 304, 499
SfaNI	GCATC	2 cut(s)	580, 1003
SfcI	CTRYAG	1 cut(s)	423
SinI	GGWCC	2 cut(s)	364, 917
SmiMI	CAYNNNNRTG	5 cut(s)	519, 648, 999, 1005, 1124
SmlI	CTYRAG	1 cut(s)	932
SmoI	CTYRAG	1 cut(s)	932
SsiI	CCGC	5 cut(s)	5, 428, 431, 566, 727
SspI	AATATT	1 cut(s)	1208
StyD4I	CCNGG	2 cut(s)	295, 784
StyI	CCWWGG	4 cut(s)	526, 643, 1000, 1022
TaaI	ACNGT	4 cut(s)	312, 560, 736, 1242
TaqI	TCGA	3 cut(s)	103, 116, 161
TaqII	GACCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	1314
TauI	GCSGC	3 cut(s)	8, 431, 434
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	7 cut(s)	35, 212, 258, 315, 330, 360, 933
Tru9I	TTAA	7 cut(s)	35, 212, 258, 315, 330, 360, 933
TscAI	CASTG	1 cut(s)	565
TseFI	GTSAC	1 cut(s)	1079
TseI	GCWGC	6 cut(s)	335, 422, 425, 473, 884, 1184
Tsp45I	GTSAC	1 cut(s)	1079
TspDTI	ATGAA	5 cut(s)	47, 288, 678, 1023, 1121
TspGWI	ACGGA	2 cut(s)	733, 1101
TspRI	CASTG	1 cut(s)	565
Van91I	CCANNNNNTGG	1 cut(s)	1199
Vha464I	CTTAAG	1 cut(s)	932
VneI	GTGCAC	1 cut(s)	300
VpaK11BI	GGWCC	2 cut(s)	364, 917
XapI	RAATTY	4 cut(s)	52, 156, 287, 690
XmnI	GAANNNNTTC	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.