Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Forward (+)

1664040 .. 1666531

Gene Structure 2492 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGCGAGCTCGGTTTTATCAGAATGTGGTTTTAGACCTCTCCCCAGATTCTACCCTAAACACACAACCTCTTTTGCCTCTAACCCTAAACCCACTTTCAAATTCAATCCACCACTTAAACCTCCTTCTTCTCTTCTCAATTCCCGATATGGATTCTACTCTAAAACCAGGAACTGGGCATTGAATGTGGCAACACCTTTAACAACTCTTCAGTCTCCATCCGAGGAAGACACGGAGAGATTCGACCCAGGTGCGCCTCCTCCCTTCAATTTGGCGGATATAAGAGCAGCCATACCTAAGCATTGTTGGGTTAAGAATCCATGGATGTCTATGAGTTATGTTGTCAGAGATGTTGCTATCGTCTTTGGATTGGCTGCTGTTGCTGCTTACTTCAACAATTGGCTTCTCTGGCCTCTCTACTGGTTCGCTCAAGGAACCATGTTCTGGGCTCTCTTTGTCCTTGGCCATGACTGCGGACATGGTAGCTTCTCGAATGATCCGAGGCTGAACAGTGTGGCTGGTCATCTTCTTCATTCCTCAATTCTGGTCCCTTACCATGGCTGGAGGATTAGCCACAGAACTCACCACCAGAACCATGGTCATGTCGAGAATGACGAATCATGGCATCCTTTGCCTGAAAGCATCTACAAGAATTTGGAAAAGACGACTCAAATGTTTAGGTTTACACTGCCTTTTCCAATGCTCGCATACCCTTTCTACTTGTGGAACAGAAGTCCAGGGAAACAAGGTTCTCATTATCATCCGGACAGTGACTTGTTTCTTCCAAAAGAGAAGAAAGATGTTCTGACATCAACTGCCTGTTGGACTGCAATGGCTGCTTTGCTTGTTTGTCTCAACTTTGTCATGGGTCCAATCCAGATGCTCAAACTATATGGCATCCCTTATTGGATATTTGTAATGTGGTTGGACTTCGTCACTTACTTGCACCACCATGGACATGAAGACAAGCTCCCTTGGTATCGTGGAAAGGAATGGAGTTACCTGAGAGGAGGGCTCACAACATTAGATCGTGACTACGGATGGATCAATAACATCCACCACGATATTGGAACTCATGTGATACATCATCTTTTCCCGCAGATCCCACATTATCATCTAGTAGAAGCAACAGAAGCAGCTAAACCAGTACTAGGAAAGTACTACAGAGAACCGAAAAACTCTGGACCTCTGCCACTTCACTTACTGGGAAGCCTCATAAAGAGTATGAAACAAGACCATTTCGTAAGCGATACAGGAGATGTCGTGTACTATGAGGCAGATCCAAAACTCAATGGACAAAGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006950 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0009987 GO:0016020 GO:0016053 GO:0016491 GO:0016705 GO:0019752 GO:0031090 GO:0031967 GO:0031975 GO:0032787 GO:0042170 GO:0042389 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0055114 GO:0071704 GO:0072330 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

435

Amino Acids

50.14

Weight (kDa)

8.74

Isoelectric Point (pI)

38.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	1 - 126	5.8e-50	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	133 - 388	1.7e-31	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	174, 444
AccIII	TCCGGA	1 cut(s)	763
AciI	CCGC	3 cut(s)	275, 474, 1097
AclWI	GGATC	4 cut(s)	491, 1052, 1096, 1274
AcoI	YGGCCR	1 cut(s)	463
AcsI	RAATTY	2 cut(s)	101, 652
AcuI	CTGAAG	1 cut(s)	194
AfaI	GTAC	3 cut(s)	1149, 1160, 1268
AfiI	CCNNNNNNNGG	4 cut(s)	174, 444, 557, 1151
AgsI	TTSAA	5 cut(s)	100, 106, 184, 268, 394
AjnI	CCWGG	3 cut(s)	167, 247, 736
AloI	GAACNNNNNNTCC	2 cut(s)	733, 765
AluBI	AGCT	4 cut(s)	9, 486, 970, 1139
AluI	AGCT	4 cut(s)	9, 486, 970, 1139
Alw21I	GWGCWC	1 cut(s)	11
Alw26I	GTCTC	2 cut(s)	219, 857
AlwI	GGATC	4 cut(s)	491, 1052, 1096, 1274
AlwNI	CAGNNNCTG	1 cut(s)	174
Aor13HI	TCCGGA	1 cut(s)	763
AoxI	GGCC	2 cut(s)	410, 463
ApeKI	GCWGC	5 cut(s)	287, 374, 383, 836, 1136
ApoI	RAATTY	2 cut(s)	101, 652
AspLEI	GCGC	1 cut(s)	256
AspS9I	GGNCC	3 cut(s)	547, 869, 1184
AsuHPI	GGTGA	1 cut(s)	575
AvaII	GGWCC	3 cut(s)	547, 869, 1184
BalI	TGGCCA	1 cut(s)	465
BanII	GRGCYC	3 cut(s)	11, 451, 1017
BbsI	GAAGAC	2 cut(s)	234, 969
Bbv12I	GWGCWC	1 cut(s)	11
BbvI	GCAGC	5 cut(s)	299, 361, 370, 823, 1148
BccI	CCATC	2 cut(s)	226, 1035
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	3 cut(s)	169, 249, 738
BcoDI	GTCTC	2 cut(s)	219, 857
BfaI	CTAG	2 cut(s)	1118, 1151
BfmI	CTRYAG	1 cut(s)	1162
BisI	GCNGC	5 cut(s)	288, 375, 384, 837, 1137
BlsI	GCNGC	5 cut(s)	289, 376, 385, 838, 1138
BmcAI	AGTACT	2 cut(s)	1149, 1160
Bme1390I	CCNGG	3 cut(s)	169, 249, 738
Bme18I	GGWCC	3 cut(s)	547, 869, 1184
BmgT120I	GGNCC	3 cut(s)	547, 869, 1184
BmiI	GGNNCC	3 cut(s)	436, 549, 870
BmrFI	CCNGG	3 cut(s)	169, 249, 738
BmrI	ACTGGG	2 cut(s)	184, 1214
BmsI	GCATC	4 cut(s)	634, 651, 870, 906
BmuI	ACTGGG	2 cut(s)	184, 1214
BpiI	GAAGAC	2 cut(s)	234, 969
BplI	GAGNNNNNCTC	2 cut(s)	999, 1031
BpmI	CTGGAG	1 cut(s)	583
Bpu10I	CCTNAGC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	763
BsaXI	ACNNNNNCTCC	2 cut(s)	1248, 1278
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 444, 557, 1151
Bse1I	ACTGG	4 cut(s)	179, 425, 1145, 1209
Bse3DI	GCAATG	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	763
BseBI	CCWGG	3 cut(s)	169, 249, 738
BseGI	GGATG	7 cut(s)	218, 330, 625, 760, 897, 1046, 1053
BseLI	CCNNNNNNNGG	4 cut(s)	174, 444, 557, 1151
BseMI	GCAATG	1 cut(s)	837
BseMII	CTCAG	1 cut(s)	995
BseNI	ACTGG	4 cut(s)	179, 425, 1145, 1209
BseRI	GAGGAG	2 cut(s)	249, 1023
BseXI	GCAGC	5 cut(s)	299, 361, 370, 823, 1148
BshFI	GGCC	2 cut(s)	412, 465
BsiHKAI	GWGCWC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	764
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	4 cut(s)	174, 444, 557, 1151
BsmAI	GTCTC	2 cut(s)	219, 857
BsmFI	GGGAC	1 cut(s)	533
BsnI	GGCC	2 cut(s)	412, 465
Bsp1286I	GDGCHC	3 cut(s)	11, 451, 1017
Bsp13I	TCCGGA	1 cut(s)	763
Bsp143I	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
Bsp19I	CCATGG	4 cut(s)	320, 556, 595, 952
BspACI	CCGC	3 cut(s)	275, 474, 1097
BspANI	GGCC	2 cut(s)	412, 465
BspCNI	CTCAG	1 cut(s)	996
BspEI	TCCGGA	1 cut(s)	763
BspLI	GGNNCC	3 cut(s)	436, 549, 870
BspPI	GGATC	4 cut(s)	491, 1052, 1096, 1274
BsrDI	GCAATG	1 cut(s)	837
BsrI	ACTGG	4 cut(s)	179, 425, 1145, 1209
BssMI	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
BssT1I	CCWWGG	6 cut(s)	320, 460, 556, 595, 952, 974
Bst2UI	CCWGG	3 cut(s)	169, 249, 738
Bst4CI	ACNGT	2 cut(s)	512, 770
Bst6I	CTCTTC	2 cut(s)	138, 213
BstAPI	GCANNNNNTGC	2 cut(s)	631, 836
BstC8I	GCNNGC	2 cut(s)	7, 705
BstDEI	CTNAG	2 cut(s)	297, 1004
BstDSI	CCRYGG	4 cut(s)	320, 556, 595, 952
BstF5I	GGATG	7 cut(s)	218, 330, 625, 760, 897, 1046, 1053
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	5 cut(s)	499, 1030, 1047, 1104, 1282
BstMAI	GTCTC	2 cut(s)	219, 857
BstMBI	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
BstMWI	GCNNNNNNNGC	7 cut(s)	380, 383, 409, 471, 631, 836, 1133
BstNI	CCWGG	3 cut(s)	169, 249, 738
BstSCI	CCNGG	3 cut(s)	167, 247, 736
BstSFI	CTRYAG	1 cut(s)	1162
BstV1I	GCAGC	5 cut(s)	299, 361, 370, 823, 1148
BstV2I	GAAGAC	2 cut(s)	234, 969
BstX2I	RGATCY	2 cut(s)	1101, 1279
BstXI	CCANNNNNNTGG	2 cut(s)	596, 1067
BstYI	RGATCY	2 cut(s)	1101, 1279
BsuRI	GGCC	2 cut(s)	412, 465
BtgI	CCRYGG	4 cut(s)	320, 556, 595, 952
BtsCI	GGATG	7 cut(s)	218, 330, 625, 760, 897, 1046, 1053
BtsI	GCAGTG	1 cut(s)	686
BtsIMutI	CAGTG	3 cut(s)	517, 686, 775
Cac8I	GCNNGC	2 cut(s)	7, 705
CaiI	CAGNNNCTG	1 cut(s)	174
CfoI	GCGC	1 cut(s)	256
Cfr13I	GGNCC	3 cut(s)	547, 869, 1184
Csp6I	GTAC	3 cut(s)	1148, 1159, 1267
CviQI	GTAC	3 cut(s)	1148, 1159, 1267
DdeI	CTNAG	2 cut(s)	297, 1004
DpnI	GATC	5 cut(s)	498, 1029, 1046, 1103, 1281
DpnII	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
EaeI	YGGCCR	1 cut(s)	463
Eam1104I	CTCTTC	2 cut(s)	138, 213
EarI	CTCTTC	2 cut(s)	138, 213
EciI	GGCGGA	1 cut(s)	290
Ecl136II	GAGCTC	1 cut(s)	9
Eco130I	CCWWGG	6 cut(s)	320, 460, 556, 595, 952, 974
Eco24I	GRGCYC	3 cut(s)	11, 451, 1017
Eco47I	GGWCC	3 cut(s)	547, 869, 1184
Eco53kI	GAGCTC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	194
EcoICRI	GAGCTC	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	167, 247, 736
EcoT14I	CCWWGG	6 cut(s)	320, 460, 556, 595, 952, 974
EcoT38I	GRGCYC	3 cut(s)	11, 451, 1017
ErhI	CCWWGG	6 cut(s)	320, 460, 556, 595, 952, 974
FaqI	GGGAC	1 cut(s)	533
FauI	CCCGC	1 cut(s)	1104
Fnu4HI	GCNGC	5 cut(s)	288, 375, 384, 837, 1137
FokI	GGATG	7 cut(s)	205, 337, 612, 747, 884, 1040, 1053
FriOI	GRGCYC	3 cut(s)	11, 451, 1017
Fsp4HI	GCNGC	5 cut(s)	288, 375, 384, 837, 1137
FspBI	CTAG	2 cut(s)	1118, 1151
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	5 cut(s)	288, 375, 384, 837, 1137
GsuI	CTGGAG	1 cut(s)	583
HaeIII	GGCC	2 cut(s)	412, 465
HapII	CCGG	1 cut(s)	764
HhaI	GCGC	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HinfI	GANTC	6 cut(s)	48, 153, 240, 316, 617, 667
HpaII	CCGG	1 cut(s)	764
HphI	GGTGA	1 cut(s)	575
Hpy166II	GTNNAC	2 cut(s)	684, 1267
Hpy188I	TCNGA	5 cut(s)	22, 223, 347, 501, 807
Hpy188III	TCNNGA	7 cut(s)	144, 490, 607, 764, 877, 1031, 1182
Hpy8I	GTNNAC	2 cut(s)	684, 1267
HpyAV	CCTTC	2 cut(s)	135, 274
HpyCH4III	ACNGT	2 cut(s)	512, 770
HpyCH4V	TGCA	2 cut(s)	830, 946
HpyF10VI	GCNNNNNNNGC	7 cut(s)	380, 383, 409, 471, 631, 836, 1133
HpyF3I	CTNAG	2 cut(s)	297, 1004
HspAI	GCGC	1 cut(s)	254
Kpn2I	TCCGGA	1 cut(s)	763
Kzo9I	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
LmnI	GCTCC	1 cut(s)	975
Lsp1109I	GCAGC	5 cut(s)	299, 361, 370, 823, 1148
LweI	GCATC	4 cut(s)	634, 651, 870, 906
MaeI	CTAG	2 cut(s)	1118, 1151
MaeIII	GTNAC	4 cut(s)	770, 934, 998, 1031
MalI	GATC	5 cut(s)	498, 1029, 1046, 1103, 1281
MboI	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
MboII	GAAGA	9 cut(s)	120, 125, 200, 239, 518, 521, 773, 805, 974
MfeI	CAATTG	1 cut(s)	397
MflI	RGATCY	2 cut(s)	1101, 1279
MhlI	GDGCHC	3 cut(s)	11, 451, 1017
MlsI	TGGCCA	1 cut(s)	465
MluCI	AATT	6 cut(s)	101, 139, 268, 397, 540, 652
MluNI	TGGCCA	1 cut(s)	465
MlyI	GAGTC	1 cut(s)	661
MmeI	TCCRAC	2 cut(s)	803, 906
Mox20I	TGGCCA	1 cut(s)	465
MroI	TCCGGA	1 cut(s)	763
MscI	TGGCCA	1 cut(s)	465
MseI	TTAA	3 cut(s)	117, 200, 312
MslI	CAYNNNNRTG	3 cut(s)	600, 951, 957
Msp20I	TGGCCA	1 cut(s)	465
MspI	CCGG	1 cut(s)	764
MspR9I	CCNGG	3 cut(s)	169, 249, 738
MunI	CAATTG	1 cut(s)	397
MvaI	CCWGG	3 cut(s)	169, 249, 738
MwoI	GCNNNNNNNGC	7 cut(s)	380, 383, 409, 471, 631, 836, 1133
NcoI	CCATGG	4 cut(s)	320, 556, 595, 952
NdeII	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
NlaIV	GGNNCC	3 cut(s)	436, 549, 870
NmuCI	GTSAC	3 cut(s)	770, 934, 1031
PcsI	WCGNNNNNNNCGW	2 cut(s)	497, 612
PfeI	GAWTC	5 cut(s)	48, 153, 240, 316, 617
PflFI	GACNNNGTC	1 cut(s)	932
PflMI	CCANNNNNTGG	2 cut(s)	174, 444
PkrI	GCNGC	5 cut(s)	289, 376, 385, 838, 1138
PleI	GAGTC	1 cut(s)	661
PpsI	GAGTC	1 cut(s)	661
Psp124BI	GAGCTC	1 cut(s)	11
Psp6I	CCWGG	3 cut(s)	167, 247, 736
PspGI	CCWGG	3 cut(s)	167, 247, 736
PspN4I	GGNNCC	3 cut(s)	436, 549, 870
PspPI	GGNCC	3 cut(s)	547, 869, 1184
PstNI	CAGNNNCTG	1 cut(s)	174
PsuI	RGATCY	2 cut(s)	1101, 1279
PsyI	GACNNNGTC	1 cut(s)	932
RsaI	GTAC	3 cut(s)	1149, 1160, 1268
RsaNI	GTAC	3 cut(s)	1148, 1159, 1267
RseI	CAYNNNNRTG	3 cut(s)	600, 951, 957
SacI	GAGCTC	1 cut(s)	11
SaqAI	TTAA	3 cut(s)	117, 200, 312
SatI	GCNGC	5 cut(s)	288, 375, 384, 837, 1137
Sau3AI	GATC	5 cut(s)	496, 1027, 1044, 1101, 1279
Sau96I	GGNCC	3 cut(s)	547, 869, 1184
ScaI	AGTACT	2 cut(s)	1149, 1160
SchI	GAGTC	1 cut(s)	661
ScrFI	CCNGG	3 cut(s)	169, 249, 738
SduI	GDGCHC	3 cut(s)	11, 451, 1017
SfaNI	GCATC	4 cut(s)	634, 651, 870, 906
SfcI	CTRYAG	1 cut(s)	1162
SinI	GGWCC	3 cut(s)	547, 869, 1184
SmiMI	CAYNNNNRTG	3 cut(s)	600, 951, 957
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	6 cut(s)	101, 139, 268, 397, 540, 652
SsiI	CCGC	3 cut(s)	275, 474, 1097
SspMI	CTAG	2 cut(s)	1118, 1151
SstI	GAGCTC	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	167, 247, 736
StyI	CCWWGG	6 cut(s)	320, 460, 556, 595, 952, 974
TaaI	ACNGT	2 cut(s)	512, 770
TaqI	TCGA	3 cut(s)	243, 491, 606
TasI	AATT	6 cut(s)	101, 139, 268, 397, 540, 652
TatI	WGTACW	3 cut(s)	1147, 1158, 1266
TfiI	GAWTC	5 cut(s)	48, 153, 240, 316, 617
Tru1I	TTAA	3 cut(s)	117, 200, 312
Tru9I	TTAA	3 cut(s)	117, 200, 312
TscAI	CASTG	3 cut(s)	517, 693, 775
TseFI	GTSAC	3 cut(s)	770, 934, 1031
TseI	GCWGC	5 cut(s)	287, 374, 383, 836, 1136
Tsp45I	GTSAC	3 cut(s)	770, 934, 1031
TspDTI	ATGAA	3 cut(s)	521, 975, 1241
TspGWI	ACGGA	2 cut(s)	248, 1053
TspRI	CASTG	3 cut(s)	517, 693, 775
Tth111I	GACNNNGTC	1 cut(s)	932
Van91I	CCANNNNNTGG	2 cut(s)	174, 444
VpaK11BI	GGWCC	3 cut(s)	547, 869, 1184
XapI	RAATTY	2 cut(s)	101, 652
XcmI	CCANNNNNNNNNTGG	2 cut(s)	593, 1064
XspI	CTAG	2 cut(s)	1118, 1151
ZrmI	AGTACT	2 cut(s)	1149, 1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.