MD07G1223100.v1.1

omega-3 fatty acid desaturase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
30008443 .. 30011490
3048 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1223100.v1.1.491

Sequence Viewer

Length: 1320 bp
ATGGCGACTTGGGTCCTCTCAGAATGCACCCTAAAACCTCTCCCTAAATTCTACTCACATCCCAGAAACGCCCTCCCCTCAAAACCGTCCACCCTCCGGCCATTCCCCAATGTGAGGAGCACCAATCTTTTGGGGTTCAGAGGGGCAAAATGGTCACTCAATGTGAGTGCGCCATTGCGTGTCCCATCCGTGGATGGGGAAGACAATGGCAAAGTGAGCACTAATGGGGTTGGAGACGGTGGTGAATTTGACCCCGGTGCCCCTCCCCCCTTCAAGTTGGGTGACATCAGAGCTGCCATTCCTAAGCATTGCTGGGTTAAGGACCCTTGGAAATCTATGAGCTATGTGGTCAGAGATGTGGCTGTGGTTTTTGGGATGGCGGCGCTTGCATCTTACCTTAACAATTGGGCTGTTTGGCCTCTCTACTGGTTTGCTCAGGGCACCATGTTCTGGGCTCTCTTTGTTCTTGGACATGATTGTGGCCACGGAAGTTTCTCGAATAATCCAAAGCTGAATAGCGTGGTCGGTCATCTTCTTCATTCTTCAATCCTTGTCCCATACCATGGATGGAGAATTAGCCACAGAACTCATCATCAGAACCATGGACACGTCGAAAATGACGAGTCTTGGCATCCGTTGCCTGAGAAAATTTACAAGAGTTTGGATAAGATGACTCAGATATTTAGGTTCACCCTACCATTCCCCATGCTTGCTTATCCTTTCTATCTGTGGAATCGAAGTCCGGGAAAGAGTGGCTCTCATTATGATCCAAACAGCGAATTGTTTCTCCCAAATGAAAGGAAAGACATCATTACTTCCACTGCCTGTTGGGCAGCAATGGCTGCGCTGCTAGTCGGTCTGTCTTTCACAATGGGACCTGTCCAAGTGCTTAAGCTCTACGGCGTTCCATACTGGATGTTTGTCTTGTGGTTGGACTTAGTGACTTACTTACATCACCATGGCCACGAGGACAAGCTTCCATGGTATCGTGGGAAGGAATGGAGTTATCTAAGAGGAGGACTGACAACCATTGATCGCGACTACGGATGGATCAACAACATCCATCATGATATCGGAACTCATGTCATACATCATCTCTTCCCTCAAATCCCACATTACAACTTAATAGAAGCAACGGAGGCAGCTAAGCCTGTGCTCGGGAAGTACTACAGAGAACCGAAAAAATCAGGGCCTCTCCCACTTCACCTACTGGGAGTCCTTGTAAGAAGCTTTAAACGCGATCATTACGTGAGTGACACTGGGGATGTTGTATATTATCAAACCGATAAGGAACTTGCCGGGTCAGCGGTATCAGAATGA

Protein Analysis

440

Amino Acids

49.85

Weight (kDa)

8.89

Isoelectric Point (pI)

37.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3474 PF11960 1 - 128 9.1e-49 Domain of unknown function (DUF3474)
FA_desaturase PF00487 135 - 390 2.4e-32 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 257, 440
AccB7I CCANNNNNTGG 2 cut(s) 450, 563
AccII CGCG 2 cut(s) 1038, 1239
AciI CCGC 2 cut(s) 380, 1307
AclWI GGATC 2 cut(s) 761, 1058
AcoI YGGCCR 3 cut(s) 98, 481, 961
AcsI RAATTY 3 cut(s) 47, 245, 648
AfaI GTAC 1 cut(s) 1166
AfiI CCNNNNNNNGG 7 cut(s) 96, 114, 190, 195, 450, 563, 1157
AflII CTTAAG 1 cut(s) 890
AflIII ACRYGT 1 cut(s) 607
AgsI TTSAA 2 cut(s) 274, 546
AjiI CACGTC 1 cut(s) 610
AluBI AGCT 7 cut(s) 293, 342, 511, 895, 976, 1145, 1230
AluI AGCT 7 cut(s) 293, 342, 511, 895, 976, 1145, 1230
Alw21I GWGCWC 3 cut(s) 122, 221, 1158
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 2 cut(s) 761, 1058
Ama87I CYCGRG 1 cut(s) 1157
AoxI GGCC 5 cut(s) 98, 416, 481, 961, 1190
ApeKI GCWGC 5 cut(s) 293, 833, 842, 847, 1142
ApoI RAATTY 3 cut(s) 47, 245, 648
Asp700I GAANNNNTTC 1 cut(s) 783
AspLEI GCGC 3 cut(s) 172, 385, 847
AspS9I GGNCC 4 cut(s) 13, 322, 875, 1190
AsuC2I CCSGG 3 cut(s) 255, 744, 1300
AsuHPI GGTGA 5 cut(s) 254, 293, 682, 947, 1196
AvaI CYCGRG 1 cut(s) 1157
AvaII GGWCC 3 cut(s) 13, 322, 875
BaeGI GKGCMC 2 cut(s) 262, 443
BalI TGGCCA 2 cut(s) 483, 963
BanI GGYRCC 2 cut(s) 257, 440
BanII GRGCYC 1 cut(s) 457
BauI CACGAG 1 cut(s) 965
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 3 cut(s) 122, 221, 1158
BbvI GCAGC 5 cut(s) 280, 829, 834, 845, 1154
BccI CCATC 6 cut(s) 188, 193, 370, 561, 1041, 1071
BceAI ACGGC 1 cut(s) 916
BcnI CCSGG 3 cut(s) 255, 744, 1300
BcoDI GTCTC 1 cut(s) 228
BfaI CTAG 1 cut(s) 851
BfmI CTRYAG 1 cut(s) 1168
BfoI RGCGCY 1 cut(s) 386
BfrI CTTAAG 1 cut(s) 890
BglI GCCNNNNNGGC 1 cut(s) 830
BisI GCNGC 6 cut(s) 294, 381, 834, 843, 848, 1143
BlpI GCTNAGC 1 cut(s) 1146
BlsI GCNGC 6 cut(s) 295, 382, 835, 844, 849, 1144
BmcAI AGTACT 1 cut(s) 1166
Bme1390I CCNGG 3 cut(s) 255, 744, 1300
Bme18I GGWCC 3 cut(s) 13, 322, 875
BmeT110I CYCGRG 1 cut(s) 1157
BmgBI CACGTC 1 cut(s) 610
BmgT120I GGNCC 4 cut(s) 13, 322, 875, 1190
BmiI GGNNCC 5 cut(s) 14, 259, 324, 442, 876
BmrFI CCNGG 3 cut(s) 255, 744, 1300
BmrI ACTGGG 2 cut(s) 1220, 1269
BmsI GCATC 2 cut(s) 398, 640
BmuI ACTGGG 2 cut(s) 1220, 1269
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 207
BplI GAGNNNNNCTC 2 cut(s) 742, 774
Bpu10I CCTNAGC 2 cut(s) 303, 435
Bpu1102I GCTNAGC 1 cut(s) 1146
BpuMI CCSGG 3 cut(s) 255, 744, 1300
BsaAI YACGTR 1 cut(s) 1249
BsaJI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 958, 980
BsaXI ACNNNNNCTCC 2 cut(s) 1206, 1236
Bsc4I CCNNNNNNNGG 7 cut(s) 96, 114, 190, 195, 450, 563, 1157
Bse1I ACTGG 4 cut(s) 431, 917, 1215, 1264
Bse3DI GCAATG 3 cut(s) 173, 307, 843
BseDI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 958, 980
BseLI CCNNNNNNNGG 7 cut(s) 96, 114, 190, 195, 450, 563, 1157
BseMI GCAATG 3 cut(s) 173, 307, 843
BseMII CTCAG 4 cut(s) 33, 449, 633, 689
BseNI ACTGG 4 cut(s) 431, 917, 1215, 1264
BseRI GAGGAG 2 cut(s) 130, 1029
BseSI GKGCMC 2 cut(s) 262, 443
BseXI GCAGC 5 cut(s) 280, 829, 834, 845, 1154
BseYI CCCAGC 1 cut(s) 312
Bsh1236I CGCG 2 cut(s) 1038, 1239
BshFI GGCC 5 cut(s) 100, 418, 483, 963, 1192
BshNI GGYRCC 2 cut(s) 257, 440
BsiHKAI GWGCWC 3 cut(s) 122, 221, 1158
BsiHKCI CYCGRG 1 cut(s) 1157
BsiSI CCGG 4 cut(s) 97, 255, 743, 1299
BslFI GGGAC 3 cut(s) 167, 539, 888
BslI CCNNNNNNNGG 7 cut(s) 96, 114, 190, 195, 450, 563, 1157
BsmAI GTCTC 1 cut(s) 228
BsmBI CGTCTC 1 cut(s) 228
BsmFI GGGAC 3 cut(s) 167, 539, 888
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 5 cut(s) 100, 418, 483, 963, 1192
BsoBI CYCGRG 1 cut(s) 1157
Bsp1286I GDGCHC 6 cut(s) 122, 221, 262, 443, 457, 1158
Bsp143I GATC 4 cut(s) 766, 1033, 1050, 1240
Bsp1720I GCTNAGC 1 cut(s) 1146
Bsp19I CCATGG 4 cut(s) 562, 601, 958, 980
Bsp68I TCGCGA 1 cut(s) 1038
BspACI CCGC 2 cut(s) 380, 1307
BspANI GGCC 5 cut(s) 100, 418, 483, 963, 1192
BspCNI CTCAG 4 cut(s) 32, 448, 634, 688
BspFNI CGCG 2 cut(s) 1038, 1239
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 5 cut(s) 14, 259, 324, 442, 876
BspPI GGATC 2 cut(s) 761, 1058
BspT107I GGYRCC 2 cut(s) 257, 440
BspTI CTTAAG 1 cut(s) 890
BsrDI GCAATG 3 cut(s) 173, 307, 843
BsrI ACTGG 4 cut(s) 431, 917, 1215, 1264
BssECI CCNNGG 8 cut(s) 189, 253, 326, 484, 562, 601, 958, 980
BssMI GATC 4 cut(s) 766, 1033, 1050, 1240
BssSI CACGAG 1 cut(s) 965
BssT1I CCWWGG 5 cut(s) 326, 562, 601, 958, 980
Bst2BI CACGAG 1 cut(s) 965
Bst4CI ACNGT 2 cut(s) 87, 239
Bst6I CTCTTC 1 cut(s) 1103
BstAFI CTTAAG 1 cut(s) 890
BstAPI GCANNNNNTGC 2 cut(s) 637, 842
BstBAI YACGTR 1 cut(s) 1249
BstC8I GCNNGC 2 cut(s) 387, 711
BstDEI CTNAG 8 cut(s) 19, 303, 435, 642, 675, 937, 1010, 1146
BstDSI CCRYGG 6 cut(s) 189, 484, 562, 601, 958, 980
BstFNI CGCG 2 cut(s) 1038, 1239
BstH2I RGCGCY 1 cut(s) 386
BstHHI GCGC 3 cut(s) 172, 385, 847
BstKTI GATC 4 cut(s) 769, 1036, 1053, 1243
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 4 cut(s) 766, 1033, 1050, 1240
BstMWI GCNNNNNNNGC 9 cut(s) 216, 386, 637, 830, 839, 842, 1139, 1236, 1304
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 3 cut(s) 253, 742, 1298
BstSFI CTRYAG 1 cut(s) 1168
BstSLI GKGCMC 2 cut(s) 262, 443
BstUI CGCG 2 cut(s) 1038, 1239
BstV1I GCAGC 5 cut(s) 280, 829, 834, 845, 1154
BstV2I GAAGAC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 5 cut(s) 100, 418, 483, 963, 1192
BtgI CCRYGG 6 cut(s) 189, 484, 562, 601, 958, 980
BtrI CACGTC 1 cut(s) 610
BtsI GCAGTG 1 cut(s) 819
BtsIMutI CAGTG 2 cut(s) 819, 1257
BtuMI TCGCGA 1 cut(s) 1038
Cac8I GCNNGC 2 cut(s) 387, 711
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 3 cut(s) 172, 385, 847
Cfr13I GGNCC 4 cut(s) 13, 322, 875, 1190
Csp6I GTAC 1 cut(s) 1165
CviAII CATG 9 cut(s) 445, 473, 563, 602, 706, 959, 981, 1067, 1082
CviQI GTAC 1 cut(s) 1165
DdeI CTNAG 8 cut(s) 19, 303, 435, 642, 675, 937, 1010, 1146
DpnI GATC 4 cut(s) 768, 1035, 1052, 1242
DpnII GATC 4 cut(s) 766, 1033, 1050, 1240
DraI TTTAAA 1 cut(s) 1234
EaeI YGGCCR 3 cut(s) 98, 481, 961
Eam1104I CTCTTC 1 cut(s) 1103
EarI CTCTTC 1 cut(s) 1103
Eco130I CCWWGG 5 cut(s) 326, 562, 601, 958, 980
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 3 cut(s) 13, 322, 875
Eco88I CYCGRG 1 cut(s) 1157
EcoO109I RGGNCCY 4 cut(s) 13, 322, 875, 1190
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 5 cut(s) 326, 562, 601, 958, 980
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 5 cut(s) 326, 562, 601, 958, 980
Esp3I CGTCTC 1 cut(s) 228
FaeI CATG 9 cut(s) 448, 476, 566, 605, 709, 962, 984, 1070, 1085
FaqI GGGAC 3 cut(s) 167, 539, 888
FatI CATG 9 cut(s) 444, 472, 562, 601, 705, 958, 980, 1066, 1081
Fnu4HI GCNGC 6 cut(s) 294, 381, 834, 843, 848, 1143
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 6 cut(s) 294, 381, 834, 843, 848, 1143
FspBI CTAG 1 cut(s) 851
GlaI GCGC 3 cut(s) 171, 384, 846
GluI GCNGC 6 cut(s) 294, 381, 834, 843, 848, 1143
GsaI CCCAGC 1 cut(s) 316
HaeII RGCGCY 1 cut(s) 386
HaeIII GGCC 5 cut(s) 100, 418, 483, 963, 1192
HapII CCGG 4 cut(s) 97, 255, 743, 1299
HhaI GCGC 3 cut(s) 172, 385, 847
Hin1II CATG 9 cut(s) 448, 476, 566, 605, 709, 962, 984, 1070, 1085
Hin6I GCGC 3 cut(s) 170, 383, 845
HinP1I GCGC 3 cut(s) 170, 383, 845
HindIII AAGCTT 2 cut(s) 974, 1228
HinfI GANTC 4 cut(s) 623, 673, 733, 1215
HpaII CCGG 4 cut(s) 97, 255, 743, 1299
HphI GGTGA 5 cut(s) 254, 293, 682, 947, 1196
Hpy166II GTNNAC 2 cut(s) 90, 690
Hpy188I TCNGA 8 cut(s) 22, 140, 290, 353, 597, 678, 1076, 1315
Hpy188III TCNNGA 4 cut(s) 496, 1037, 1067, 1159
Hpy8I GTNNAC 2 cut(s) 90, 690
Hpy99I CGWCG 1 cut(s) 614
HpyAV CCTTC 2 cut(s) 280, 988
HpyCH4III ACNGT 2 cut(s) 87, 239
HpyCH4IV ACGT 2 cut(s) 609, 1248
HpyCH4V TGCA 2 cut(s) 27, 389
HpyF10VI GCNNNNNNNGC 9 cut(s) 216, 386, 637, 830, 839, 842, 1139, 1236, 1304
HpyF3I CTNAG 8 cut(s) 19, 303, 435, 642, 675, 937, 1010, 1146
HpySE526I ACGT 2 cut(s) 609, 1248
Hsp92II CATG 9 cut(s) 448, 476, 566, 605, 709, 962, 984, 1070, 1085
HspAI GCGC 3 cut(s) 170, 383, 845
Kzo9I GATC 4 cut(s) 766, 1033, 1050, 1240
LmnI GCTCC 1 cut(s) 117
Lsp1109I GCAGC 5 cut(s) 280, 829, 834, 845, 1154
LweI GCATC 2 cut(s) 398, 640
MaeI CTAG 1 cut(s) 851
MaeII ACGT 2 cut(s) 609, 1248
MaeIII GTNAC 4 cut(s) 153, 281, 940, 1253
MalI GATC 4 cut(s) 768, 1035, 1052, 1242
MboI GATC 4 cut(s) 766, 1033, 1050, 1240
MboII GAAGA 5 cut(s) 212, 524, 527, 534, 1090
MfeI CAATTG 1 cut(s) 403
MhlI GDGCHC 6 cut(s) 122, 221, 262, 443, 457, 1158
MlsI TGGCCA 2 cut(s) 483, 963
MluCI AATT 6 cut(s) 47, 245, 403, 573, 648, 779
MluNI TGGCCA 2 cut(s) 483, 963
MlyI GAGTC 3 cut(s) 632, 667, 1224
MmeI TCCRAC 2 cut(s) 211, 912
Mox20I TGGCCA 2 cut(s) 483, 963
MroXI GAANNNNTTC 1 cut(s) 783
MscI TGGCCA 2 cut(s) 483, 963
MseI TTAA 5 cut(s) 318, 399, 891, 1124, 1233
MslI CAYNNNNRTG 2 cut(s) 477, 957
Msp20I TGGCCA 2 cut(s) 483, 963
MspA1I CMGCKG 1 cut(s) 1307
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 4 cut(s) 97, 255, 743, 1299
MspR9I CCNGG 3 cut(s) 255, 744, 1300
MunI CAATTG 1 cut(s) 403
Mva1269I GAATGC 1 cut(s) 29
MvnI CGCG 2 cut(s) 1038, 1239
MwoI GCNNNNNNNGC 9 cut(s) 216, 386, 637, 830, 839, 842, 1139, 1236, 1304
NciI CCSGG 3 cut(s) 255, 744, 1300
NcoI CCATGG 4 cut(s) 562, 601, 958, 980
NdeII GATC 4 cut(s) 766, 1033, 1050, 1240
NlaIII CATG 9 cut(s) 448, 476, 566, 605, 709, 962, 984, 1070, 1085
NlaIV GGNNCC 5 cut(s) 14, 259, 324, 442, 876
NmuCI GTSAC 4 cut(s) 153, 281, 940, 1253
NruI TCGCGA 1 cut(s) 1038
PagI TCATGA 1 cut(s) 1066
PcsI WCGNNNNNNNCGW 1 cut(s) 618
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 783
PfeI GAWTC 1 cut(s) 733
PflMI CCANNNNNTGG 2 cut(s) 450, 563
PfoI TCCNGGA 1 cut(s) 742
PkrI GCNGC 6 cut(s) 295, 382, 835, 844, 849, 1144
PleI GAGTC 3 cut(s) 631, 667, 1223
PpsI GAGTC 3 cut(s) 631, 667, 1223
Ppu21I YACGTR 1 cut(s) 1249
PpuMI RGGWCCY 3 cut(s) 13, 322, 875
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 3 cut(s) 13, 322, 875
PspFI CCCAGC 1 cut(s) 312
PspN4I GGNNCC 5 cut(s) 14, 259, 324, 442, 876
PspPI GGNCC 4 cut(s) 13, 322, 875, 1190
PspPPI RGGWCCY 3 cut(s) 13, 322, 875
RruI TCGCGA 1 cut(s) 1038
RsaI GTAC 1 cut(s) 1166
RsaNI GTAC 1 cut(s) 1165
RseI CAYNNNNRTG 2 cut(s) 477, 957
SaqAI TTAA 5 cut(s) 318, 399, 891, 1124, 1233
SatI GCNGC 6 cut(s) 294, 381, 834, 843, 848, 1143
Sau3AI GATC 4 cut(s) 766, 1033, 1050, 1240
Sau96I GGNCC 4 cut(s) 13, 322, 875, 1190
ScaI AGTACT 1 cut(s) 1166
SchI GAGTC 3 cut(s) 632, 667, 1224
ScrFI CCNGG 3 cut(s) 255, 744, 1300
SduI GDGCHC 6 cut(s) 122, 221, 262, 443, 457, 1158
SfaNI GCATC 2 cut(s) 398, 640
SfcI CTRYAG 1 cut(s) 1168
SinI GGWCC 3 cut(s) 13, 322, 875
SmiMI CAYNNNNRTG 2 cut(s) 477, 957
SmlI CTYRAG 1 cut(s) 890
SmoI CTYRAG 1 cut(s) 890
Sse9I AATT 6 cut(s) 47, 245, 403, 573, 648, 779
SsiI CCGC 2 cut(s) 380, 1307
SspMI CTAG 1 cut(s) 851
StyD4I CCNGG 3 cut(s) 253, 742, 1298
StyI CCWWGG 5 cut(s) 326, 562, 601, 958, 980
TaaI ACNGT 2 cut(s) 87, 239
TaiI ACGT 2 cut(s) 612, 1251
TaqI TCGA 3 cut(s) 497, 612, 736
TaqII GACCGA 2 cut(s) 515, 845
TasI AATT 6 cut(s) 47, 245, 403, 573, 648, 779
TatI WGTACW 1 cut(s) 1164
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 733
Tru1I TTAA 5 cut(s) 318, 399, 891, 1124, 1233
Tru9I TTAA 5 cut(s) 318, 399, 891, 1124, 1233
TscAI CASTG 2 cut(s) 826, 1264
TseFI GTSAC 4 cut(s) 153, 281, 940, 1253
TseI GCWGC 5 cut(s) 293, 833, 842, 847, 1142
Tsp45I GTSAC 4 cut(s) 153, 281, 940, 1253
TspDTI ATGAA 2 cut(s) 527, 810
TspGWI ACGGA 5 cut(s) 178, 501, 624, 1059, 1151
TspRI CASTG 2 cut(s) 826, 1264
Van91I CCANNNNNTGG 2 cut(s) 450, 563
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 3 cut(s) 13, 322, 875
XapI RAATTY 3 cut(s) 47, 245, 648
XcmI CCANNNNNNNNNTGG 1 cut(s) 564
XmnI GAANNNNTTC 1 cut(s) 783
XspI CTAG 1 cut(s) 851
ZrmI AGTACT 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.