Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Forward (+)

31892221 .. 31894349

Gene Structure 2129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1258700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAGGTTTTTGTGGGGGCTTAGCAGATATATTGCTTGGCCGTCTACAGTTTTAGGGGACGCTTTATTTTATGCAATACTGGAGACAGAGAGGAGTGCTAGGGTTTTGAAGATTTTCTACTTGAAGGTAATGGTGTGGCTGAGTGCAAAATGTGGAGACTATACAGCTTTTATTCGTTGTTTCTTGAGAGTATGGCATATGGTCATTCTAACCATTGCATACCTCATTAACCGTACTAGAGGAGTCCTAAATGGTACAACTCCACTCAAAGTCCTTCAGCCACGTAGATATCACATTCTTCAGTGGAAATATAACTTCATGATTGGTTCCAACCAATGTTTTACACGACTTTTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

14.1

Weight (kDa)

10.29

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	44
AcoI	YGGCCR	1 cut(s)	38
AcuI	CTGAAG	2 cut(s)	260, 284
AfaI	GTAC	2 cut(s)	235, 256
AgsI	TTSAA	2 cut(s)	109, 124
AluBI	AGCT	2 cut(s)	167, 356
AluI	AGCT	2 cut(s)	167, 356
Alw26I	GTCTC	2 cut(s)	77, 150
AoxI	GGCC	1 cut(s)	38
Asp700I	GAANNNNTTC	1 cut(s)	113
BarI	GAAGNNNNNNTAC	2 cut(s)	101, 133
BceAI	ACGGC	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	77, 150
BfaI	CTAG	2 cut(s)	99, 237
BfmI	CTRYAG	1 cut(s)	45
BlpI	GCTNAGC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	101
Bpu1102I	GCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	205
BsaAI	YACGTR	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	84
Bse3DI	GCAATG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	213
BseMII	CTCAG	1 cut(s)	131
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	2 cut(s)	106, 255
BshFI	GGCC	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	71
BsmAI	GTCTC	2 cut(s)	77, 150
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	20
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	1 cut(s)	132
BspHI	TCATGA	1 cut(s)	318
BspLI	GGNNCC	1 cut(s)	328
BsrDI	GCAATG	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	49, 233
BstBAI	YACGTR	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	20, 140, 357
BstMAI	GTCTC	2 cut(s)	77, 150
BstSFI	CTRYAG	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	40
BtsIMutI	CAGTG	1 cut(s)	308
CciI	TCATGA	1 cut(s)	318
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	2 cut(s)	234, 255
CviAII	CATG	1 cut(s)	319
CviJI	RGCY	6 cut(s)	19, 40, 139, 167, 280, 356
CviKI_1	RGCY	6 cut(s)	19, 40, 139, 167, 280, 356
CviQI	GTAC	2 cut(s)	234, 255
DdeI	CTNAG	3 cut(s)	20, 140, 357
EaeI	YGGCCR	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	290
Eco57I	CTGAAG	2 cut(s)	260, 284
EcoRV	GATATC	1 cut(s)	290
FaeI	CATG	1 cut(s)	322
FaiI	YATR	9 cut(s)	30, 72, 162, 193, 198, 200, 220, 312, 320
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	198
FblI	GTMKAC	1 cut(s)	44
FspBI	CTAG	2 cut(s)	99, 237
GsuI	CTGGAG	1 cut(s)	101
HaeIII	GGCC	1 cut(s)	40
HgaI	GACGC	1 cut(s)	68
Hin1II	CATG	1 cut(s)	322
HinfI	GANTC	1 cut(s)	243
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188III	TCNNGA	2 cut(s)	184, 319
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	2 cut(s)	118, 284
HpyCH4III	ACNGT	2 cut(s)	49, 233
HpyCH4IV	ACGT	1 cut(s)	283
HpyCH4V	TGCA	3 cut(s)	74, 146, 218
HpyF3I	CTNAG	3 cut(s)	20, 140, 357
HpySE526I	ACGT	1 cut(s)	283
Hsp92II	CATG	1 cut(s)	322
LpnPI	CCDG	1 cut(s)	65
MaeI	CTAG	2 cut(s)	99, 237
MaeII	ACGT	1 cut(s)	283
MboII	GAAGA	2 cut(s)	121, 290
MlyI	GAGTC	1 cut(s)	252
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	3 cut(s)	84, 233, 233
MroXI	GAANNNNTTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	228
NdeI	CATATG	1 cut(s)	198
NlaIII	CATG	1 cut(s)	322
NlaIV	GGNNCC	1 cut(s)	328
PagI	TCATGA	1 cut(s)	318
PdmI	GAANNNNTTC	1 cut(s)	113
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Ppu21I	YACGTR	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	328
RsaI	GTAC	2 cut(s)	235, 256
RsaNI	GTAC	2 cut(s)	234, 255
SaqAI	TTAA	1 cut(s)	228
SchI	GAGTC	1 cut(s)	252
SetI	ASST	6 cut(s)	8, 129, 169, 225, 286, 358
SfcI	CTRYAG	1 cut(s)	45
SgeI	CNNG	8 cut(s)	48, 92, 111, 133, 196, 249, 294, 331
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
SspMI	CTAG	2 cut(s)	99, 237
TaaI	ACNGT	2 cut(s)	49, 233
TaiI	ACGT	1 cut(s)	286
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	308
TspDTI	ATGAA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	308
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	113
XspI	CTAG	2 cut(s)	99, 237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.