Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002181

Physical Location & Seq

Genomic Coordinates Forward (+)

6727729 .. 6730748

Gene Structure 3020 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g11310.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGCGAGTTGGGTCCTCTCACAATGCGGCCTTAGACCTCTCCCCCATGTTTCAACGATACCCAGAACCAGAATCGCCGCAAAACCAATAAAGCTTCCGGCTTTGACGAAGAACAATATCACAGATCTCGGGTTCGGGTTCGGGTCGACCCGGATTTCCAGCGGGAGGTTTGGAAGCTGGGGCGTGAAGGTGAGTGCCCCATTGAGAGTTGCTTCTACAGAAGATGAGGAGGAGAGAATGAGAATCAATGGAGATGAAGAGGAGATTGAATTCGATCCGGGTTCACCTCCACCGTTCAAGTTGGCTGATGTTAGGGCGGCAATCCCTAAGCATTGTTGGGTTAAGGACCCGTGGAGATCAATGAGCTATGTGGTTAGGGATGTGGTGGTGGTTTTTGGGTTGGCTTTTGCTGCGGTTTGTATAAACAAGTGGTATGTTTGGCCTCTGTATTGGGTTGCTCAGGGGACTATGTTTTGGGCACTCTTTGTTCTTGGTCATGATTGTGGACATGGAAGCTTTTCAAACAATCAGAAGATGAATAGTGTGGTTGGACATCTATTGCATTCTTCGATTCTTGTACCCTATCATGGATGGAGAATTAGCCACAGGACTCACCATCAAAACCATGGACATGTTGAGAATGATGAATCATGGCACCCGTTGTCCGAGAGAATTTACAGAACTTTGGATAAAACAACACAAATGTTGCGGTTCAGTTTGCCTTTTCCCTTGCTAGCATACCCTTTTTACCTTTGGAATAGAAGTCCAGGAAAGACTGGTTCTCATTTTGAGCCAAGCAGCGACCTTTTTGTCCCCAGTGAGAAGAAAGATGTGATCACTTCAACTGTATGTTGGACCGCCATGTCTGCTTTGCTTGTGGGGTTATCATTTGTGATTGGTCCGATTCAAATGCTTAAGCTCTATGGCATTCCCTACTGGGTGTTTGTCATGTGGTTGGATTTAGTTACTTACTTGCACCATCATGGTCACGAAGACAAACTACCTTGGTATCGCGGAAAGGAATGGAGTTATCTGAGGGGAGGGCTCACAACACTTGATCGTGACTATGGGTTGATCAATAACATCCATCACGATATTGGAACCCATGTGGTCCATCATCTTTTTCCTCAAATCCCTCACTACCATCTAGTTGAAGCAACAGAGGCAGCTAAGCCAGTGTTTGGGAAATATTACAGAGAGCCGAAGAAATCAGGACCTCTACCATTTCACCTACTTGGAAATTTTATAACGAGCTTGAAAAAAGACCATTATGTCAGTGACTCTGGGGATGTTGTGTACTACCAAACTGACCCCAAGCTTAGTTCAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3474 FA_desaturase

Protein Analysis

444

Amino Acids

50.62

Weight (kDa)

8.86

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3474	PF11960	1 - 135	6.1e-52	Domain of unknown function (DUF3474)
FA_desaturase	PF00487	144 - 336	1.9e-21	Fatty acid desaturase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11170 AT5G05580 AT5G05580
fragaria_vesca	FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_6g11310 FvH4_7g24590 FvH4_7g24590 FvH4_7g24590
malus_domestica	MD01G1154100.v1.1 MD04G1155400.v1.1 MD07G1223100.v1.1 MD12G1168600.v1.1 MD17G1258700.v1.1
prunus_persica	Prupe.2G251200_v2.0.a1 Prupe.6G278800_v2.0.a1 Prupe.6G278800_v2.0.a1
pyrus_communis	pycom01g17140 pycom04g13980 pycom07g20170 pycom12g16010
rosa_chinensis	RchiOBHm_Chr1g0370421 RchiOBHm_Chr3g0462851
rosa_laevigata	RLG00000024827 RLG00000027049
rosa_multiflora	Rmu_sc0000766.1_g000013 Rmu_sc0005656.1_g000006
rosa_roxburghii	Rroxscaffold_4G00286590 Rroxscaffold_6G00417140
rosa_rugosa	Rorug01G0356300 Rorug03G0059600
rosa_samantha	Rh1AG364800 Rh1BG328000 Rh1CG341000 Rh1DG358300 Rh3AG117800 Rh3BG121600 Rh3CG124500 Rh3DG123200
rosa_wichuraiana	Rw1G032100 Rw1G032150 Rw3G009990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1247
AasI	GACNNNNNNGTC	3 cut(s)	809, 862, 1271
AccB1I	GGYRCC	1 cut(s)	654
AccB7I	CCANNNNNTGG	1 cut(s)	1181
AccI	GTMKAC	1 cut(s)	146
AccII	CGCG	1 cut(s)	1014
AciI	CCGC	8 cut(s)	27, 78, 162, 317, 413, 709, 858, 1014
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	3 cut(s)	269, 672, 1240
AfaI	GTAC	2 cut(s)	579, 1298
AfiI	CCNNNNNNNGG	3 cut(s)	165, 587, 1181
AflII	CTTAAG	1 cut(s)	914
AflIII	ACRYGT	1 cut(s)	631
AgsI	TTSAA	9 cut(s)	54, 269, 298, 522, 843, 908, 1154, 1258, 1326
AjnI	CCWGG	1 cut(s)	766
AluBI	AGCT	8 cut(s)	94, 177, 366, 516, 919, 1169, 1254, 1318
AluI	AGCT	8 cut(s)	94, 177, 366, 516, 919, 1169, 1254, 1318
AlwI	GGATC	1 cut(s)	269
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	2 cut(s)	28, 440
ApeKI	GCWGC	3 cut(s)	410, 798, 1166
ApoI	RAATTY	3 cut(s)	269, 672, 1240
Asp700I	GAANNNNTTC	1 cut(s)	517
AspS9I	GGNCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
AsuC2I	CCSGG	2 cut(s)	151, 279
AsuHPI	GGTGA	4 cut(s)	202, 276, 605, 1220
AsuNHI	GCTAGC	1 cut(s)	733
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
BaeGI	GKGCMC	2 cut(s)	199, 481
BaeI	ACNNNNGTAYC	2 cut(s)	992, 1025
BanI	GGYRCC	1 cut(s)	654
BanII	GRGCYC	1 cut(s)	1047
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BbsI	GAAGAC	1 cut(s)	999
BbvI	GCAGC	3 cut(s)	397, 810, 1178
BccI	CCATC	6 cut(s)	585, 624, 987, 1095, 1122, 1152
BcgI	CGANNNNNNTGC	2 cut(s)	892, 926
BciT130I	CCWGG	1 cut(s)	768
BclI	TGATCA	2 cut(s)	834, 1074
BcnI	CCSGG	2 cut(s)	151, 279
BfaI	CTAG	2 cut(s)	734, 1148
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	914
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	6 cut(s)	28, 78, 318, 411, 799, 1167
BlpI	GCTNAGC	1 cut(s)	1170
BlsI	GCNGC	6 cut(s)	29, 79, 319, 412, 800, 1168
Bme1390I	CCNGG	3 cut(s)	151, 279, 768
Bme18I	GGWCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
BmiI	GGNNCC	4 cut(s)	14, 348, 656, 1102
BmrFI	CCNGG	3 cut(s)	151, 279, 768
BmrI	ACTGGG	2 cut(s)	810, 946
BmtI	GCTAGC	1 cut(s)	737
BmuI	ACTGGG	2 cut(s)	810, 946
BpiI	GAAGAC	1 cut(s)	999
Bpu10I	CCTNAGC	2 cut(s)	327, 459
Bpu1102I	GCTNAGC	1 cut(s)	1170
BpuMI	CCSGG	2 cut(s)	151, 279
BsaJI	CCNNGG	3 cut(s)	350, 625, 1004
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 587, 1181
Bse1I	ACTGG	4 cut(s)	781, 816, 941, 1175
BseBI	CCWGG	1 cut(s)	768
BseDI	CCNNGG	3 cut(s)	350, 625, 1004
BseGI	GGATG	4 cut(s)	385, 596, 1083, 1294
BseLI	CCNNNNNNNGG	3 cut(s)	165, 587, 1181
BseMII	CTCAG	2 cut(s)	473, 1025
BseNI	ACTGG	4 cut(s)	781, 816, 941, 1175
BseRI	GAGGAG	3 cut(s)	242, 245, 275
BseSI	GKGCMC	2 cut(s)	199, 481
BseXI	GCAGC	3 cut(s)	397, 810, 1178
BseYI	CCCAGC	1 cut(s)	177
Bsh1236I	CGCG	1 cut(s)	1014
BshFI	GGCC	2 cut(s)	30, 442
BshNI	GGYRCC	1 cut(s)	654
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	98, 151, 278
BslFI	GGGAC	2 cut(s)	478, 797
BslI	CCNNNNNNNGG	3 cut(s)	165, 587, 1181
BsmFI	GGGAC	2 cut(s)	478, 797
BsmI	GAATGC	2 cut(s)	562, 927
BsnI	GGCC	2 cut(s)	30, 442
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	199, 481, 1047
Bsp143I	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
Bsp1720I	GCTNAGC	1 cut(s)	1170
Bsp19I	CCATGG	1 cut(s)	625
BspACI	CCGC	8 cut(s)	27, 78, 162, 317, 413, 709, 858, 1014
BspANI	GGCC	2 cut(s)	30, 442
BspCNI	CTCAG	2 cut(s)	472, 1026
BspFNI	CGCG	1 cut(s)	1014
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	14, 348, 656, 1102
BspOI	GCTAGC	1 cut(s)	737
BspPI	GGATC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	654
BspTI	CTTAAG	1 cut(s)	914
BsrI	ACTGG	4 cut(s)	781, 816, 941, 1175
BssECI	CCNNGG	3 cut(s)	350, 625, 1004
BssMI	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
BssT1I	CCWWGG	2 cut(s)	625, 1004
Bst2UI	CCWGG	1 cut(s)	768
Bst4CI	ACNGT	2 cut(s)	294, 847
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	1 cut(s)	914
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	6 cut(s)	32, 327, 459, 1034, 1170, 1319
BstDSI	CCRYGG	2 cut(s)	350, 625
BstF5I	GGATG	4 cut(s)	385, 596, 1083, 1294
BstFNI	CGCG	1 cut(s)	1014
BstKTI	GATC	6 cut(s)	127, 277, 359, 837, 1060, 1077
BstMBI	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 866, 1163
BstNI	CCWGG	1 cut(s)	768
BstNSI	RCATGY	1 cut(s)	635
BstSCI	CCNGG	3 cut(s)	149, 277, 766
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	2 cut(s)	199, 481
BstUI	CGCG	1 cut(s)	1014
BstV1I	GCAGC	3 cut(s)	397, 810, 1178
BstV2I	GAAGAC	1 cut(s)	999
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	30, 442
BtgI	CCRYGG	2 cut(s)	350, 625
BtsCI	GGATG	4 cut(s)	385, 596, 1083, 1294
BtsIMutI	CAGTG	3 cut(s)	823, 1182, 1282
Cac8I	GCNNGC	1 cut(s)	735
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
Csp6I	GTAC	2 cut(s)	578, 1297
CviQI	GTAC	2 cut(s)	578, 1297
DdeI	CTNAG	6 cut(s)	32, 327, 459, 1034, 1170, 1319
DpnI	GATC	6 cut(s)	126, 276, 358, 836, 1059, 1076
DpnII	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
DrdI	GACNNNNNNGTC	3 cut(s)	809, 862, 1271
DseDI	GACNNNNNNGTC	3 cut(s)	809, 862, 1271
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Eco130I	CCWWGG	2 cut(s)	625, 1004
Eco24I	GRGCYC	1 cut(s)	1047
Eco47I	GGWCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	3 cut(s)	13, 346, 1214
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	625, 1004
EcoT38I	GRGCYC	1 cut(s)	1047
ErhI	CCWWGG	2 cut(s)	625, 1004
FaqI	GGGAC	2 cut(s)	478, 797
FauI	CCCGC	1 cut(s)	155
FbaI	TGATCA	2 cut(s)	834, 1074
FblI	GTMKAC	1 cut(s)	146
Fnu4HI	GCNGC	6 cut(s)	28, 78, 318, 411, 799, 1167
FokI	GGATG	4 cut(s)	392, 603, 1070, 1301
FriOI	GRGCYC	1 cut(s)	1047
Fsp4HI	GCNGC	6 cut(s)	28, 78, 318, 411, 799, 1167
FspBI	CTAG	2 cut(s)	734, 1148
GluI	GCNGC	6 cut(s)	28, 78, 318, 411, 799, 1167
GsaI	CCCAGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	30, 442
HapII	CCGG	3 cut(s)	98, 151, 278
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	3 cut(s)	92, 514, 1316
HinfI	GANTC	7 cut(s)	72, 243, 571, 610, 647, 904, 1280
HpaII	CCGG	3 cut(s)	98, 151, 278
HphI	GGTGA	4 cut(s)	202, 276, 605, 1220
Hpy166II	GTNNAC	4 cut(s)	147, 284, 506, 1297
Hpy188I	TCNGA	4 cut(s)	531, 667, 903, 1035
Hpy188III	TCNNGA	5 cut(s)	497, 989, 1061, 1091, 1212
Hpy8I	GTNNAC	4 cut(s)	147, 284, 506, 1297
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	2 cut(s)	294, 847
HpyCH4V	TGCA	2 cut(s)	562, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 866, 1163
HpyF3I	CTNAG	6 cut(s)	32, 327, 459, 1034, 1170, 1319
Ksp22I	TGATCA	2 cut(s)	834, 1074
Kzo9I	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
Lsp1109I	GCAGC	3 cut(s)	397, 810, 1178
MaeI	CTAG	2 cut(s)	734, 1148
MaeIII	GTNAC	4 cut(s)	964, 986, 1061, 1277
MalI	GATC	6 cut(s)	126, 276, 358, 836, 1059, 1076
MboI	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
MboII	GAAGA	8 cut(s)	121, 233, 269, 544, 558, 835, 1004, 1216
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	3 cut(s)	199, 481, 1047
MluCI	AATT	4 cut(s)	269, 597, 672, 1240
MlyI	GAGTC	2 cut(s)	604, 1274
MmeI	TCCRAC	3 cut(s)	529, 833, 936
MroXI	GAANNNNTTC	1 cut(s)	517
MseI	TTAA	2 cut(s)	342, 915
MslI	CAYNNNNRTG	3 cut(s)	501, 630, 981
MspA1I	CMGCKG	1 cut(s)	162
MspCI	CTTAAG	1 cut(s)	914
MspI	CCGG	3 cut(s)	98, 151, 278
MspR9I	CCNGG	3 cut(s)	151, 279, 768
Mva1269I	GAATGC	2 cut(s)	562, 927
MvaI	CCWGG	1 cut(s)	768
MvnI	CGCG	1 cut(s)	1014
MwoI	GCNNNNNNNGC	3 cut(s)	410, 866, 1163
NciI	CCSGG	2 cut(s)	151, 279
NcoI	CCATGG	1 cut(s)	625
NdeII	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
NheI	GCTAGC	1 cut(s)	733
NlaIV	GGNNCC	4 cut(s)	14, 348, 656, 1102
NmuCI	GTSAC	3 cut(s)	986, 1061, 1277
NspI	RCATGY	1 cut(s)	635
PagI	TCATGA	1 cut(s)	496
PciI	ACATGT	1 cut(s)	631
PctI	GAATGC	2 cut(s)	562, 927
PdmI	GAANNNNTTC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	72, 243, 571, 647, 904
PflMI	CCANNNNNTGG	1 cut(s)	1181
PfoI	TCCNGGA	1 cut(s)	766
PkrI	GCNGC	6 cut(s)	29, 79, 319, 412, 800, 1168
PleI	GAGTC	2 cut(s)	604, 1274
PpsI	GAGTC	2 cut(s)	604, 1274
PpuMI	RGGWCCY	3 cut(s)	13, 346, 1214
PscI	ACATGT	1 cut(s)	631
PsiI	TTATAA	1 cut(s)	1247
Psp5II	RGGWCCY	3 cut(s)	13, 346, 1214
Psp6I	CCWGG	1 cut(s)	766
PspFI	CCCAGC	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	766
PspN4I	GGNNCC	4 cut(s)	14, 348, 656, 1102
PspPI	GGNCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
PspPPI	RGGWCCY	3 cut(s)	13, 346, 1214
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	2 cut(s)	579, 1298
RsaNI	GTAC	2 cut(s)	578, 1297
RseI	CAYNNNNRTG	3 cut(s)	501, 630, 981
SalI	GTCGAC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	342, 915
SatI	GCNGC	6 cut(s)	28, 78, 318, 411, 799, 1167
Sau3AI	GATC	6 cut(s)	124, 274, 356, 834, 1057, 1074
Sau96I	GGNCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
SchI	GAGTC	2 cut(s)	604, 1274
ScrFI	CCNGG	3 cut(s)	151, 279, 768
SduI	GDGCHC	3 cut(s)	199, 481, 1047
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
SmiMI	CAYNNNNRTG	3 cut(s)	501, 630, 981
SmlI	CTYRAG	1 cut(s)	914
SmoI	CTYRAG	1 cut(s)	914
Sse9I	AATT	4 cut(s)	269, 597, 672, 1240
SsiI	CCGC	8 cut(s)	27, 78, 162, 317, 413, 709, 858, 1014
SspI	AATATT	1 cut(s)	1190
SspMI	CTAG	2 cut(s)	734, 1148
StyD4I	CCNGG	3 cut(s)	149, 277, 766
StyI	CCWWGG	2 cut(s)	625, 1004
TaaI	ACNGT	2 cut(s)	294, 847
TaqI	TCGA	3 cut(s)	146, 273, 569
TasI	AATT	4 cut(s)	269, 597, 672, 1240
TatI	WGTACW	1 cut(s)	1296
TauI	GCSGC	3 cut(s)	30, 80, 320
TfiI	GAWTC	5 cut(s)	72, 243, 571, 647, 904
Tru1I	TTAA	2 cut(s)	342, 915
Tru9I	TTAA	2 cut(s)	342, 915
TscAI	CASTG	3 cut(s)	823, 1182, 1282
TseFI	GTSAC	3 cut(s)	986, 1061, 1277
TseI	GCWGC	3 cut(s)	410, 798, 1166
Tsp45I	GTSAC	3 cut(s)	986, 1061, 1277
TspDTI	ATGAA	3 cut(s)	270, 551, 660
TspRI	CASTG	3 cut(s)	823, 1182, 1282
Van91I	CCANNNNNTGG	1 cut(s)	1181
Vha464I	CTTAAG	1 cut(s)	914
VpaK11BI	GGWCC	6 cut(s)	13, 346, 855, 899, 1111, 1214
XapI	RAATTY	3 cut(s)	269, 672, 1240
XceI	RCATGY	1 cut(s)	635
XcmI	CCANNNNNNNNNTGG	2 cut(s)	623, 1094
XmiI	GTMKAC	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	517
XspI	CTAG	2 cut(s)	734, 1148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.