RLG00000024826

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0011783
Physical Location & Seq
Reverse (-)
39464517 .. 39465857
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024826

Sequence Viewer

Length: 1245 bp
ATGACTGAGAACTCTAGCTGTTTCAACGGCATCGTACGCCGGCTTTTATGCACCGGCAACGTTCCGACTCACCCATCATCGGATTACATTCTAGACTCTAACCCAACCCAACTCGCTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAACTTTACCTTCACCTTCGGCTACAGCCACGCCTGGAATAGTAGCCAGGCTAATGGGGCTGGAGTCTCTTCCCGAGACGAACTGGGTGAGAGCCCCGGATTTGGTTACCAGAAGCAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTTGATTTGACTCCGACTAATCAGCACCGTCGTGTCCGGACCTCCGTCTCTTTCAGGGAGGTTCCGGAGGTGATGAGTCAGCCGGAGAGTCAGGAGTTTCTGGTGGTGTATTTGGATAGTGTGGATAAGGGGAAGGAGTTCGGGTCGTCGAAAGTGAAGAAAACAGAGGAAGTGAAACAGGGGAAGGAACAGAGGAGTAAGAACAGAGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAGGCAGTGAAGAAAAATAGCAAGAAGGTTTCGAAGTTGAAAGATGAGCCTAGAAGAGAATGTGGTGCTCAATCTTCGAAGGTTAGTCGTAATTGCAAAGGAGATGAGGGTTTGGGGTACTCTGTTCGACCTCATAAGAAGGTTGTGAGCAAAAATGGTGGAACAAATTTAAGAGAAGGTAGTGGGGAACGTACTCCACCGAAGAAAACGACGACTCAGAAGAAGAAGAAAGTGGTGCACGAGCCAAAATTCAAGAAAGGAAAACATCAGAATGAAGCTAAGAAAAGAGAGGCTGTTGATAATAGTTCGTGCTCGGAGAATTCAAGCCCTGTTTCGGTTTTTGATATTGATGACATTTTGATCCAACATGAAACTTGGTTATCAGAATATTCGAGTCCCAAGGATTTGAAATCCCAGATGAAATCTCCACCAAGAGTTTCTTACAATGAAGACCCTGAATTGAGAGCAGTCAAAATCAAAGATATGGAGCCAATTAAGAATGAGGACAGCGGAGATTCCACGGAGCTTTTGGCCACAAAAGTCTTCAGATTGACAGAAGAAGAATTGAAAGAGTCAAATTGGGTATCGAAGAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTTGAGGGGCTGATCCTTGATGTGCTACTGAACCAGACCATTGATGACATTGTGCAGCTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

415

Amino Acids

46.69

Weight (kDa)

8.74

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 2.2e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 339, 367
AciI CCGC 1 cut(s) 1056
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 901, 1186
AcoI YGGCCR 1 cut(s) 1077
AcsI RAATTY 3 cut(s) 712, 794, 865
AcuI CTGAAG 1 cut(s) 1075
AfaI GTAC 3 cut(s) 36, 665, 739
AfiI CCNNNNNNNGG 3 cut(s) 79, 256, 880
AgsI TTSAA 6 cut(s) 25, 586, 799, 870, 955, 1114
AjnI CCWGG 2 cut(s) 187, 200
AleI CACNNNNGTG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 5 cut(s) 18, 282, 824, 1072, 1237
AluI AGCT 5 cut(s) 18, 282, 824, 1072, 1237
Alw21I GWGCWC 3 cut(s) 616, 786, 860
Alw26I GTCTC 3 cut(s) 224, 225, 355
Alw44I GTGCAC 1 cut(s) 782
AlwI GGATC 2 cut(s) 901, 1186
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 2 cut(s) 339, 367
AoxI GGCC 1 cut(s) 1077
ApaLI GTGCAC 1 cut(s) 782
ApeKI GCWGC 1 cut(s) 1234
ApoI RAATTY 3 cut(s) 712, 794, 865
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 1 cut(s) 251
AsuHPI GGTGA 6 cut(s) 62, 159, 253, 289, 385, 535
AsuII TTCGAA 3 cut(s) 578, 623, 1161
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 786
BalI TGGCCA 1 cut(s) 1079
BanII GRGCYC 1 cut(s) 250
BauI CACGAG 1 cut(s) 785
BbsI GAAGAC 2 cut(s) 1002, 1081
Bbv12I GWGCWC 3 cut(s) 616, 786, 860
BccI CCATC 2 cut(s) 82, 292
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 2 cut(s) 189, 202
BcnI CCSGG 1 cut(s) 251
BcoDI GTCTC 3 cut(s) 224, 225, 355
BfaI CTAG 3 cut(s) 15, 92, 597
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 1235
BlsI GCNGC 1 cut(s) 1236
Bme1390I CCNGG 3 cut(s) 189, 202, 251
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 366, 1035
BmrFI CCNGG 3 cut(s) 189, 202, 251
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 247
BoxI GACNNNNGTC 1 cut(s) 347
BpiI GAAGAC 2 cut(s) 1002, 1081
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 3 cut(s) 578, 623, 1161
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 249, 945, 1065
BsaWI WCCGGW 2 cut(s) 339, 367
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 256, 880
Bse118I RCCGGY 2 cut(s) 39, 53
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 2 cut(s) 339, 367
BseBI CCWGG 2 cut(s) 189, 202
BseDI CCNNGG 3 cut(s) 249, 945, 1065
BseLI CCNNNNNNNGG 3 cut(s) 79, 256, 880
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 786
BshFI GGCC 1 cut(s) 1079
BsiHKAI GWGCWC 3 cut(s) 616, 786, 860
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 927
BslI CCNNNNNNNGG 3 cut(s) 79, 256, 880
BsmAI GTCTC 3 cut(s) 224, 225, 355
BsmBI CGTCTC 2 cut(s) 224, 355
BsmFI GGGAC 1 cut(s) 927
BsnI GGCC 1 cut(s) 1079
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 3 cut(s) 578, 623, 1161
Bsp1286I GDGCHC 4 cut(s) 250, 616, 786, 860
Bsp13I TCCGGA 2 cut(s) 339, 367
Bsp143I GATC 2 cut(s) 906, 1191
BspACI CCGC 1 cut(s) 1056
BspANI GGCC 1 cut(s) 1079
BspCNI CTCAG 1 cut(s) 775
BspEI TCCGGA 2 cut(s) 339, 367
BspLI GGNNCC 2 cut(s) 366, 1035
BspPI GGATC 2 cut(s) 901, 1186
BspT104I TTCGAA 3 cut(s) 578, 623, 1161
BsrFI RCCGGY 2 cut(s) 39, 53
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 39, 53
BssECI CCNNGG 3 cut(s) 249, 945, 1065
BssMI GATC 2 cut(s) 906, 1191
BssSI CACGAG 1 cut(s) 785
BssT1I CCWWGG 1 cut(s) 945
Bst2BI CACGAG 1 cut(s) 785
Bst2UI CCWGG 2 cut(s) 189, 202
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 3 cut(s) 228, 537, 595
BstBI TTCGAA 3 cut(s) 578, 623, 1161
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 6, 762, 825
BstDSI CCRYGG 1 cut(s) 1065
BstEII GGTNACC 1 cut(s) 259
BstKTI GATC 2 cut(s) 909, 1194
BstMAI GTCTC 3 cut(s) 224, 225, 355
BstMBI GATC 2 cut(s) 906, 1191
BstMWI GCNNNNNNNGC 2 cut(s) 36, 211
BstNI CCWGG 2 cut(s) 189, 202
BstPAI GACNNNNGTC 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 3 cut(s) 187, 200, 249
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 786
BstV2I GAAGAC 2 cut(s) 1002, 1081
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 1079
BtgI CCRYGG 1 cut(s) 1065
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 39, 53
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 3 cut(s) 35, 664, 738
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 2 cut(s) 140, 914
CviQI GTAC 3 cut(s) 35, 664, 738
DdeI CTNAG 3 cut(s) 6, 762, 825
DpnI GATC 2 cut(s) 908, 1193
DpnII GATC 2 cut(s) 906, 1191
EaeI YGGCCR 1 cut(s) 1077
Eam1104I CTCTTC 3 cut(s) 228, 537, 595
EarI CTCTTC 3 cut(s) 228, 537, 595
Eco130I CCWWGG 1 cut(s) 945
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 1075
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 865
EcoRII CCWGG 2 cut(s) 187, 200
EcoT14I CCWWGG 1 cut(s) 945
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 945
Esp3I CGTCTC 2 cut(s) 224, 355
FaeI CATG 2 cut(s) 143, 917
FaiI YATR 6 cut(s) 49, 141, 681, 915, 1031, 1152
FalI AAGNNNNNCTT 2 cut(s) 970, 1002
FaqI GGGAC 1 cut(s) 927
FatI CATG 2 cut(s) 139, 913
Fnu4HI GCNGC 1 cut(s) 1235
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 1235
FspBI CTAG 3 cut(s) 15, 92, 597
GluI GCNGC 1 cut(s) 1235
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 1079
HapII CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
Hin1II CATG 2 cut(s) 143, 917
HpaII CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
HphI GGTGA 6 cut(s) 62, 159, 253, 289, 385, 535
Hpy166II GTNNAC 1 cut(s) 784
Hpy188I TCNGA 8 cut(s) 66, 82, 318, 765, 816, 862, 931, 1094
Hpy188III TCNNGA 6 cut(s) 92, 227, 340, 368, 395, 799
Hpy8I GTNNAC 1 cut(s) 784
Hpy99I CGWCG 3 cut(s) 336, 454, 760
HpyAV CCTTC 9 cut(s) 174, 180, 430, 481, 541, 565, 619, 679, 716
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 2 cut(s) 60, 736
HpyCH4V TGCA 5 cut(s) 51, 287, 642, 784, 1234
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 211
HpyF3I CTNAG 3 cut(s) 6, 762, 825
HpySE526I ACGT 2 cut(s) 60, 736
Hsp92II CATG 2 cut(s) 143, 917
Kpn2I TCCGGA 2 cut(s) 339, 367
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 906, 1191
LmnI GCTCC 2 cut(s) 1033, 1069
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 15, 92, 597
MaeII ACGT 2 cut(s) 60, 736
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 908, 1193
MboI GATC 2 cut(s) 906, 1191
MhlI GDGCHC 4 cut(s) 250, 616, 786, 860
MlsI TGGCCA 1 cut(s) 1079
MluCI AATT 8 cut(s) 637, 712, 794, 865, 1004, 1038, 1109, 1123
MluNI TGGCCA 1 cut(s) 1079
MlyI GAGTC 9 cut(s) 61, 89, 227, 307, 388, 400, 754, 949, 1127
MmeI TCCRAC 3 cut(s) 89, 341, 934
Mox20I TGGCCA 1 cut(s) 1079
MroI TCCGGA 2 cut(s) 339, 367
MroNI GCCGGC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 440
MscI TGGCCA 1 cut(s) 1079
MseI TTAA 4 cut(s) 528, 716, 1041, 1243
MslI CAYNNNNRTG 2 cut(s) 333, 816
Msp20I TGGCCA 1 cut(s) 1079
MspA1I CMGCKG 1 cut(s) 1056
MspI CCGG 6 cut(s) 40, 54, 251, 340, 368, 386
MspR9I CCNGG 3 cut(s) 189, 202, 251
MvaI CCWGG 2 cut(s) 189, 202
MwoI GCNNNNNNNGC 2 cut(s) 36, 211
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 1 cut(s) 251
NdeII GATC 2 cut(s) 906, 1191
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 143, 917
NlaIV GGNNCC 2 cut(s) 366, 1035
NspV TTCGAA 3 cut(s) 578, 623, 1161
OliI CACNNNNGTG 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 1061, 1158
Pfl23II CGTACG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 1236
PleI GAGTC 9 cut(s) 61, 89, 226, 307, 387, 399, 754, 948, 1126
PpsI GAGTC 9 cut(s) 61, 89, 226, 307, 387, 399, 754, 948, 1126
PshAI GACNNNNGTC 1 cut(s) 347
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 2 cut(s) 187, 200
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 2 cut(s) 187, 200
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 366, 1035
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 3 cut(s) 36, 665, 739
RsaNI GTAC 3 cut(s) 35, 664, 738
RseI CAYNNNNRTG 2 cut(s) 333, 816
SaqAI TTAA 4 cut(s) 528, 716, 1041, 1243
SatI GCNGC 1 cut(s) 1235
Sau3AI GATC 2 cut(s) 906, 1191
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 9 cut(s) 61, 89, 227, 307, 388, 400, 754, 949, 1127
ScrFI CCNGG 3 cut(s) 189, 202, 251
SduI GDGCHC 4 cut(s) 250, 616, 786, 860
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 3 cut(s) 578, 623, 1161
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 333, 816
Sse9I AATT 8 cut(s) 637, 712, 794, 865, 1004, 1038, 1109, 1123
SsiI CCGC 1 cut(s) 1056
SspI AATATT 1 cut(s) 935
SspMI CTAG 3 cut(s) 15, 92, 597
StyD4I CCNGG 3 cut(s) 187, 200, 249
StyI CCWWGG 1 cut(s) 945
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 2 cut(s) 63, 739
TaqI TCGA 8 cut(s) 452, 578, 623, 673, 938, 1133, 1146, 1161
TasI AATT 8 cut(s) 637, 712, 794, 865, 1004, 1038, 1109, 1123
TfiI GAWTC 2 cut(s) 1061, 1158
Tru1I TTAA 4 cut(s) 528, 716, 1041, 1243
Tru9I TTAA 4 cut(s) 528, 716, 1041, 1243
TscAI CASTG 1 cut(s) 558
TseI GCWGC 1 cut(s) 1234
TspDTI ATGAA 7 cut(s) 156, 555, 834, 930, 980, 1008, 1167
TspGWI ACGGA 2 cut(s) 337, 1082
TspRI CASTG 1 cut(s) 558
VneI GTGCAC 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 3 cut(s) 712, 794, 865
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1072
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 3 cut(s) 15, 92, 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.