Rh3AG117900

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0011783
Physical Location & Seq
Forward (+)
10085554 .. 10087765
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG117900.1

Sequence Viewer

Length: 1488 bp
ATGGCAAACTCAATCAATTTCCTTAGCAAACCTACACGCTCCAAACGCGACCCAAGAGCGCGTACCTCCACACACGCACCCACACATTTTCCTTCTAGTTTCCAATGTGAACCCAACGACCAAAGCATTCAACTTTTCCTCACGAAGTCGCAGAAAGCCATTGAAAACCTTCCCACTCACTCTTTTCTATTGCTCTCACTTTTCCCATATCTCTCTGCTACGTCTCTCTGTTTCACCATCACAACAACAATGACCGAGAACTCTAGCTGTTTCAACGGCATCGTACGCCGGCTTTTATGCACCGGCAACGTTCCGACTCACCCGTCATCAGATTACATTCTAGACTCTAACCCAACCCAACTCGTTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAACTTTTCCTTCGCCTTCGGCTACAGCCACGCCTGGAATAGTAGCCAGGTTAATGGGGCTGGAGTCTCTTCCCGAGACGAACTGGGTGAGAGCCCCGGATTTGGTTACCAGAAGTAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTTGATTTGACTCCGACTAATCAGCACCGCCGTGTCCGGACCTCCGTCTCTTTCCGGGAGGTTCCGGGGGTTATGAGTCAGCAGGAGAGTCAGGATTTTCTGGTGGTGTATTTGGATAGTGTGGATAAGGGGAAGGAGTTCGGGTCGAAAGTGAAGAAAACAGAGGAAGTGAAACAGGGGAAGGAACAGAGGAGTAAGAACAGGGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAGGTAGTGAAGAAAAATAGCAAGAAGGTTTCGAAGTTGAAAGATGAGCCTAGAAGAGAATGTAGTGCCCAATCTTCGAAGGTTAGTCGTAATTGCAAAGGAGACGAGGGTTTGGGGTACTCTGTTCCTTATAAGAAGGTTGTGAGCAAAAATGGTGGAGCAAATTTAAGTGAAGGTAGTGGGGAACATACTCCACCGAAGAAAACAACGACTCAGAAGAAGAAGAAAGTGGTGCAAGAGCCAAAATGCAAGAAGGGAAAACATCAGAATGAAGCTAAGAAAAGAGTGGCTGTTGACAATAGTTCGTGCTCGGAGAATTCAAGTCCTGTTTCGGTTTTTGATATTGATGACATTTTGATCCAACATGAAACTTGGGTATCAGAATATTCAAGTCCCAAGGATTTGAAATCCCAGATGAAATCTCCACCAAGAGTTTCTTACAATGAAGACCCTGAATTGAGAGCAGTCAAAATCAAAGATATGGAGCCAATTAAGAACGAGGACAGCGGAGATTCCACGGAGCTTTTGGCGACAAAAGTCTTCAGTTTGACAGAAGAAGAATTGAAAGAGTCAAATTGGGTATCAAAGAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTTGAGGGGCTGATCCTTGACGTGCTATTGAACCAGGCCATTGATGACATTGTGCAACTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

495

Amino Acids

55.54

Weight (kDa)

8.79

Isoelectric Point (pI)

45.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 145 - 162 2.7e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 924
AasI GACNNNNNNGTC 1 cut(s) 322
AccII CGCG 2 cut(s) 48, 61
AccIII TCCGGA 1 cut(s) 588
AciI CCGC 2 cut(s) 580, 1299
AclI AACGTT 1 cut(s) 309
AclWI GGATC 2 cut(s) 1144, 1429
AcsI RAATTY 2 cut(s) 955, 1108
AcuI CTGAAG 1 cut(s) 1318
AfaI GTAC 3 cut(s) 64, 285, 911
AfiI CCNNNNNNNGG 1 cut(s) 505
AgsI TTSAA 9 cut(s) 131, 164, 274, 832, 1113, 1182, 1198, 1357, 1453
AjiI CACGTC 1 cut(s) 1444
AjnI CCWGG 3 cut(s) 436, 449, 1455
AleI CACNNNNGTG 1 cut(s) 582
AloI GAACNNNNNNTCC 2 cut(s) 384, 416
AluBI AGCT 4 cut(s) 267, 531, 1067, 1315
AluI AGCT 4 cut(s) 267, 531, 1067, 1315
Alw21I GWGCWC 1 cut(s) 1103
Alw26I GTCTC 5 cut(s) 228, 473, 474, 604, 888
AlwI GGATC 2 cut(s) 1144, 1429
Ama87I CYCGRG 1 cut(s) 476
Aor13HI TCCGGA 1 cut(s) 588
AoxI GGCC 1 cut(s) 1458
ApoI RAATTY 2 cut(s) 955, 1108
Asp700I GAANNNNTTC 2 cut(s) 168, 689
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 591
AsuC2I CCSGG 3 cut(s) 500, 608, 618
AsuHPI GGTGA 5 cut(s) 226, 311, 502, 538, 781
AsuII TTCGAA 3 cut(s) 824, 869, 1404
AvaI CYCGRG 1 cut(s) 476
AvaII GGWCC 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 1152, 1185
BanII GRGCYC 1 cut(s) 499
BbsI GAAGAC 2 cut(s) 1245, 1324
Bbv12I GWGCWC 1 cut(s) 1103
BccI CCATC 2 cut(s) 245, 541
BceAI ACGGC 2 cut(s) 292, 567
BciT130I CCWGG 3 cut(s) 438, 451, 1457
BcnI CCSGG 3 cut(s) 500, 608, 618
BcoDI GTCTC 5 cut(s) 228, 473, 474, 604, 888
BfaI CTAG 4 cut(s) 96, 264, 341, 843
BfmI CTRYAG 1 cut(s) 426
Bme1390I CCNGG 6 cut(s) 438, 451, 500, 608, 618, 1457
Bme18I GGWCC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 476
BmgBI CACGTC 1 cut(s) 1444
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 2 cut(s) 615, 1278
BmrFI CCNGG 6 cut(s) 438, 451, 500, 608, 618, 1457
BmrI ACTGGG 1 cut(s) 496
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 496
BoxI GACNNNNGTC 2 cut(s) 596, 1328
BpiI GAAGAC 2 cut(s) 1245, 1324
BpmI CTGGAG 1 cut(s) 485
Bpu10I CCTNAGC 1 cut(s) 23
Bpu14I TTCGAA 3 cut(s) 824, 869, 1404
BpuMI CCSGG 3 cut(s) 500, 608, 618
BsaJI CCNNGG 4 cut(s) 498, 617, 1188, 1308
BsaWI WCCGGW 1 cut(s) 588
BsaXI ACNNNNNCTCC 2 cut(s) 680, 710
Bsc4I CCNNNNNNNGG 1 cut(s) 505
Bse118I RCCGGY 2 cut(s) 288, 302
Bse1I ACTGG 1 cut(s) 491
BseAI TCCGGA 1 cut(s) 588
BseBI CCWGG 3 cut(s) 438, 451, 1457
BseDI CCNNGG 4 cut(s) 498, 617, 1188, 1308
BseLI CCNNNNNNNGG 1 cut(s) 505
BseMII CTCAG 1 cut(s) 1019
BseNI ACTGG 1 cut(s) 491
BseRI GAGGAG 1 cut(s) 757
BseSI GKGCMC 1 cut(s) 862
Bsh1236I CGCG 2 cut(s) 48, 61
BshFI GGCC 1 cut(s) 1460
BsiHKAI GWGCWC 1 cut(s) 1103
BsiHKCI CYCGRG 1 cut(s) 476
BsiSI CCGG 6 cut(s) 289, 303, 500, 589, 607, 617
BsiWI CGTACG 1 cut(s) 283
BslFI GGGAC 1 cut(s) 1170
BslI CCNNNNNNNGG 1 cut(s) 505
BsmAI GTCTC 5 cut(s) 228, 473, 474, 604, 888
BsmBI CGTCTC 4 cut(s) 228, 473, 604, 888
BsmFI GGGAC 1 cut(s) 1170
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 1 cut(s) 1460
BsoBI CYCGRG 1 cut(s) 476
Bsp119I TTCGAA 3 cut(s) 824, 869, 1404
Bsp1286I GDGCHC 3 cut(s) 499, 862, 1103
Bsp13I TCCGGA 1 cut(s) 588
Bsp143I GATC 2 cut(s) 1149, 1434
BspACI CCGC 2 cut(s) 580, 1299
BspANI GGCC 1 cut(s) 1460
BspCNI CTCAG 1 cut(s) 1018
BspEI TCCGGA 1 cut(s) 588
BspFNI CGCG 2 cut(s) 48, 61
BspLI GGNNCC 2 cut(s) 615, 1278
BspPI GGATC 2 cut(s) 1144, 1429
BspT104I TTCGAA 3 cut(s) 824, 869, 1404
BsrFI RCCGGY 2 cut(s) 288, 302
BsrI ACTGG 1 cut(s) 491
BssAI RCCGGY 2 cut(s) 288, 302
BssECI CCNNGG 4 cut(s) 498, 617, 1188, 1308
BssMI GATC 2 cut(s) 1149, 1434
BssT1I CCWWGG 1 cut(s) 1188
Bst2UI CCWGG 3 cut(s) 438, 451, 1457
Bst6I CTCTTC 3 cut(s) 477, 783, 841
BstBI TTCGAA 3 cut(s) 824, 869, 1404
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 3 cut(s) 23, 1005, 1068
BstDSI CCRYGG 1 cut(s) 1308
BstEII GGTNACC 1 cut(s) 508
BstFNI CGCG 2 cut(s) 48, 61
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 2 cut(s) 1152, 1437
BstMAI GTCTC 5 cut(s) 228, 473, 474, 604, 888
BstMBI GATC 2 cut(s) 1149, 1434
BstMWI GCNNNNNNNGC 2 cut(s) 45, 285
BstNI CCWGG 3 cut(s) 438, 451, 1457
BstPAI GACNNNNGTC 2 cut(s) 596, 1328
BstPI GGTNACC 1 cut(s) 508
BstSCI CCNGG 6 cut(s) 436, 449, 498, 606, 616, 1455
BstSFI CTRYAG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 862
BstUI CGCG 2 cut(s) 48, 61
BstV2I GAAGAC 2 cut(s) 1245, 1324
BstXI CCANNNNNNTGG 1 cut(s) 457
BsuRI GGCC 1 cut(s) 1460
BtgI CCRYGG 1 cut(s) 1308
BtrI CACGTC 1 cut(s) 1444
Cac8I GCNNGC 1 cut(s) 290
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 2 cut(s) 288, 302
Cfr13I GGNCC 1 cut(s) 591
Csp6I GTAC 3 cut(s) 63, 284, 910
CspCI CAANNNNNGTGG 4 cut(s) 928, 963, 1365, 1400
CviAII CATG 2 cut(s) 389, 1157
CviQI GTAC 3 cut(s) 63, 284, 910
DdeI CTNAG 3 cut(s) 23, 1005, 1068
DpnI GATC 2 cut(s) 1151, 1436
DpnII GATC 2 cut(s) 1149, 1434
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 3 cut(s) 477, 783, 841
EarI CTCTTC 3 cut(s) 477, 783, 841
Eco130I CCWWGG 1 cut(s) 1188
Eco24I GRGCYC 1 cut(s) 499
Eco47I GGWCC 1 cut(s) 591
Eco57I CTGAAG 1 cut(s) 1318
Eco88I CYCGRG 1 cut(s) 476
Eco91I GGTNACC 1 cut(s) 508
EcoO65I GGTNACC 1 cut(s) 508
EcoRI GAATTC 1 cut(s) 1108
EcoRII CCWGG 3 cut(s) 436, 449, 1455
EcoT14I CCWWGG 1 cut(s) 1188
EcoT38I GRGCYC 1 cut(s) 499
ErhI CCWWGG 1 cut(s) 1188
Esp3I CGTCTC 4 cut(s) 228, 473, 604, 888
FaeI CATG 2 cut(s) 392, 1160
FaiI YATR 9 cut(s) 208, 298, 390, 626, 924, 981, 1158, 1274, 1395
FalI AAGNNNNNCTT 2 cut(s) 1213, 1245
FaqI GGGAC 1 cut(s) 1170
FatI CATG 2 cut(s) 388, 1156
FriOI GRGCYC 1 cut(s) 499
FspBI CTAG 4 cut(s) 96, 264, 341, 843
GlaI GCGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 485
HaeIII GGCC 1 cut(s) 1460
HapII CCGG 6 cut(s) 289, 303, 500, 589, 607, 617
HhaI GCGC 1 cut(s) 61
Hin1II CATG 2 cut(s) 392, 1160
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 1087
HindII GTYRAC 1 cut(s) 1087
HpaII CCGG 6 cut(s) 289, 303, 500, 589, 607, 617
HphI GGTGA 5 cut(s) 226, 311, 502, 538, 781
Hpy166II GTNNAC 2 cut(s) 110, 1087
Hpy188I TCNGA 7 cut(s) 315, 331, 567, 1008, 1059, 1105, 1174
Hpy188III TCNNGA 5 cut(s) 142, 341, 476, 589, 644
Hpy8I GTNNAC 2 cut(s) 110, 1087
HpyCH4IV ACGT 3 cut(s) 221, 309, 1443
HpyCH4V TGCA 6 cut(s) 300, 536, 888, 1027, 1041, 1477
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 285
HpyF3I CTNAG 3 cut(s) 23, 1005, 1068
HpySE526I ACGT 3 cut(s) 221, 309, 1443
Hsp92II CATG 2 cut(s) 392, 1160
HspAI GCGC 1 cut(s) 59
Kpn2I TCCGGA 1 cut(s) 588
KroI GCCGGC 1 cut(s) 288
KroNI GCCGGC 1 cut(s) 290
Kzo9I GATC 2 cut(s) 1149, 1434
LmnI GCTCC 4 cut(s) 44, 950, 1276, 1312
LweI GCATC 1 cut(s) 288
MaeI CTAG 4 cut(s) 96, 264, 341, 843
MaeII ACGT 3 cut(s) 221, 309, 1443
MaeIII GTNAC 1 cut(s) 508
MalI GATC 2 cut(s) 1151, 1436
MboI GATC 2 cut(s) 1149, 1434
MhlI GDGCHC 3 cut(s) 499, 862, 1103
MluCI AATT 8 cut(s) 16, 883, 955, 1108, 1247, 1281, 1352, 1366
MlyI GAGTC 8 cut(s) 310, 338, 476, 556, 637, 649, 997, 1370
MmeI TCCRAC 3 cut(s) 338, 590, 1177
MroI TCCGGA 1 cut(s) 588
MroNI GCCGGC 1 cut(s) 288
MroXI GAANNNNTTC 2 cut(s) 168, 689
MseI TTAA 6 cut(s) 366, 455, 774, 959, 1284, 1486
MslI CAYNNNNRTG 2 cut(s) 582, 1059
MspA1I CMGCKG 1 cut(s) 1299
MspI CCGG 6 cut(s) 289, 303, 500, 589, 607, 617
MspR9I CCNGG 6 cut(s) 438, 451, 500, 608, 618, 1457
Mva1269I GAATGC 1 cut(s) 126
MvaI CCWGG 3 cut(s) 438, 451, 1457
MvnI CGCG 2 cut(s) 48, 61
MwoI GCNNNNNNNGC 2 cut(s) 45, 285
NaeI GCCGGC 1 cut(s) 290
NciI CCSGG 3 cut(s) 500, 608, 618
NdeII GATC 2 cut(s) 1149, 1434
NgoMIV GCCGGC 1 cut(s) 288
NlaIII CATG 2 cut(s) 392, 1160
NlaIV GGNNCC 2 cut(s) 615, 1278
NspV TTCGAA 3 cut(s) 824, 869, 1404
OliI CACNNNNGTG 1 cut(s) 582
PctI GAATGC 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 290
PdmI GAANNNNTTC 2 cut(s) 168, 689
PfeI GAWTC 2 cut(s) 1304, 1401
Pfl23II CGTACG 1 cut(s) 283
PfoI TCCNGGA 1 cut(s) 606
PleI GAGTC 8 cut(s) 310, 338, 475, 556, 636, 648, 997, 1369
PpsI GAGTC 8 cut(s) 310, 338, 475, 556, 636, 648, 997, 1369
PshAI GACNNNNGTC 2 cut(s) 596, 1328
PsiI TTATAA 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 436, 449, 1455
PspEI GGTNACC 1 cut(s) 508
PspGI CCWGG 3 cut(s) 436, 449, 1455
PspLI CGTACG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 615, 1278
PspPI GGNCC 1 cut(s) 591
RsaI GTAC 3 cut(s) 64, 285, 911
RsaNI GTAC 3 cut(s) 63, 284, 910
RseI CAYNNNNRTG 2 cut(s) 582, 1059
SaqAI TTAA 6 cut(s) 366, 455, 774, 959, 1284, 1486
Sau3AI GATC 2 cut(s) 1149, 1434
Sau96I GGNCC 1 cut(s) 591
SchI GAGTC 8 cut(s) 310, 338, 476, 556, 637, 649, 997, 1370
ScrFI CCNGG 6 cut(s) 438, 451, 500, 608, 618, 1457
SduI GDGCHC 3 cut(s) 499, 862, 1103
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 426
SfuI TTCGAA 3 cut(s) 824, 869, 1404
SinI GGWCC 1 cut(s) 591
SmiMI CAYNNNNRTG 2 cut(s) 582, 1059
Sse9I AATT 8 cut(s) 16, 883, 955, 1108, 1247, 1281, 1352, 1366
SsiI CCGC 2 cut(s) 580, 1299
SspI AATATT 1 cut(s) 1178
SspMI CTAG 4 cut(s) 96, 264, 341, 843
StyD4I CCNGG 6 cut(s) 436, 449, 498, 606, 616, 1455
StyI CCWWGG 1 cut(s) 1188
TaiI ACGT 3 cut(s) 224, 312, 1446
TaqI TCGA 5 cut(s) 698, 824, 869, 1389, 1404
TaqII GACCGA 1 cut(s) 269
TasI AATT 8 cut(s) 16, 883, 955, 1108, 1247, 1281, 1352, 1366
TfiI GAWTC 2 cut(s) 1304, 1401
Tru1I TTAA 6 cut(s) 366, 455, 774, 959, 1284, 1486
Tru9I TTAA 6 cut(s) 366, 455, 774, 959, 1284, 1486
TspDTI ATGAA 7 cut(s) 405, 801, 1077, 1173, 1223, 1251, 1410
TspGWI ACGGA 2 cut(s) 586, 1325
VpaK11BI GGWCC 1 cut(s) 591
XapI RAATTY 2 cut(s) 955, 1108
XbaI TCTAGA 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 1315
XmnI GAANNNNTTC 2 cut(s) 168, 689
XspI CTAG 4 cut(s) 96, 264, 341, 843
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.