Rh3DG123300

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011783
Physical Location & Seq
Forward (+)
10416048 .. 10418325
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG123300.1

Sequence Viewer

Length: 1242 bp
ATGACCGAGAACTCTAGCTGTTTCAACGGCATCGTACGCCGGCTTTTATGCACCGGCAACGTTCCGACTCACCCGTCATCAGATTACATTCTAGACTCTAACCCAACCCAACTCGTTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAACTTTTCCTTCGCCTTCGGCTACAGCCACGCCTGGAATAGTAGCCAGGTTAATGGGGCTGGAGTCTCTTCCCGAGACGAACTGGGTGAGAGCCCCGGATTTGGTTACCAGAAGCAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTTGATTTGACTCCGACTAATCAGCACCGCCGTGTCCGGACCTCCGTCTCTTTCCGGGAGGTTCCGGCGGCTATGAGTCAGCCGGAGAGTCAGGATTTTCTGGTGGTGTATTTGGATAATGTGGATAAGGGGAAGGAGTTCGGGTCGAAAGTGAAGAAAACAGAGGAAGTGAAGCAGGGGAAGGAACAGAGGAGTAAGAACAGGGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAGGTAGTGAAGAAAAATAGCAAGAAGGTTTCGAAGTTGAAAGATGAGCCTAGAAGAGAATGTAGTGCTCAATCTTCGAAGGTTAGTCGTAATTGCAAAGGAGATGAGGGTTTGGGGTACTCTGTTCGACCTTATAAGAAGGTTGTGAGCAAAAATGGTGGTGCAAATTTAAGAGAAGGTAGTGCGGAACATACTCCACCGAAGAAAACGACGACTCAGAAGAAGAAGAAAGTGGTGCAAGAGCCAAAATTCAAGAAGGGAAAACATCAGAATGAAGCTAAGAAAAGAGAGGCTATCGATAATAGTTCGTGCTCGGAGAATTCAAGCCCTGTTTCGGTTTTTGATATTAATGACATTTTGATCCAACATGAAACTTGGGTATCAGAATATTCAAGTCCCAAGGATTTGAAATCCCAGATGAAATCTCCACCAAGAGTTTCTTACAATGAAGACCCTGAATTGAGAGCAGTCAAAATTAAAGATATGGAGCCAATTAAGAACGAGGACAGCGGAGATTCCACGGAGCTTTTGGCGACAAAAGTCTTCAGGTTGACAGAAGAAGAATTGAAAGAGTCAAATTGGGTATCAAAGAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTTGAGGGGCTGATCCTTGATGTGCTATTGAACCAGGCCATTGATGACATTGTGCAACTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

413

Amino Acids

46.61

Weight (kDa)

8.83

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 2.2e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 678
AasI GACNNNNNNGTC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 4 cut(s) 331, 371, 728, 1053
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 898, 1183
AcsI RAATTY 3 cut(s) 709, 791, 862
AcuI CTGAAG 1 cut(s) 1072
AfaI GTAC 2 cut(s) 36, 662
AfiI CCNNNNNNNGG 2 cut(s) 256, 877
AgsI TTSAA 8 cut(s) 25, 583, 796, 867, 936, 952, 1111, 1207
AjnI CCWGG 3 cut(s) 187, 200, 1209
AleI CACNNNNGTG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 18, 282, 821, 1069
AluI AGCT 4 cut(s) 18, 282, 821, 1069
Alw21I GWGCWC 2 cut(s) 613, 857
Alw26I GTCTC 3 cut(s) 224, 225, 355
AlwI GGATC 2 cut(s) 898, 1183
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 1212
ApoI RAATTY 3 cut(s) 709, 791, 862
AseI ATTAAT 1 cut(s) 891
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 2 cut(s) 251, 359
AsuHPI GGTGA 4 cut(s) 62, 253, 289, 532
AsuII TTCGAA 3 cut(s) 575, 620, 1158
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 342
BaeI ACNNNNGTAYC 2 cut(s) 906, 939
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 999, 1078
Bbv12I GWGCWC 2 cut(s) 613, 857
BccI CCATC 1 cut(s) 292
BceAI ACGGC 2 cut(s) 43, 318
BciT130I CCWGG 3 cut(s) 189, 202, 1211
BcnI CCSGG 2 cut(s) 251, 359
BcoDI GTCTC 3 cut(s) 224, 225, 355
BfaI CTAG 3 cut(s) 15, 92, 594
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 372
BlsI GCNGC 1 cut(s) 373
Bme1390I CCNGG 5 cut(s) 189, 202, 251, 359, 1211
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 366, 1032
BmrFI CCNGG 5 cut(s) 189, 202, 251, 359, 1211
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 247
BoxI GACNNNNGTC 2 cut(s) 347, 1082
BpiI GAAGAC 2 cut(s) 999, 1078
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 3 cut(s) 575, 620, 1158
BpuMI CCSGG 2 cut(s) 251, 359
Bsa29I ATCGAT 1 cut(s) 840
BsaJI CCNNGG 3 cut(s) 249, 942, 1062
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 877
Bse118I RCCGGY 2 cut(s) 39, 53
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 189, 202, 1211
BseCI ATCGAT 1 cut(s) 840
BseDI CCNNGG 3 cut(s) 249, 942, 1062
BseLI CCNNNNNNNGG 2 cut(s) 256, 877
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 508
BshFI GGCC 1 cut(s) 1214
BshVI ATCGAT 1 cut(s) 840
BsiHKAI GWGCWC 2 cut(s) 613, 857
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 7 cut(s) 40, 54, 251, 340, 358, 368, 386
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 924
BslI CCNNNNNNNGG 2 cut(s) 256, 877
BsmAI GTCTC 3 cut(s) 224, 225, 355
BsmBI CGTCTC 2 cut(s) 224, 355
BsmFI GGGAC 1 cut(s) 924
BsnI GGCC 1 cut(s) 1214
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 3 cut(s) 575, 620, 1158
Bsp1286I GDGCHC 3 cut(s) 250, 613, 857
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 903, 1188
BspACI CCGC 4 cut(s) 331, 371, 728, 1053
BspANI GGCC 1 cut(s) 1214
BspCNI CTCAG 1 cut(s) 772
BspDI ATCGAT 1 cut(s) 840
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 366, 1032
BspPI GGATC 2 cut(s) 898, 1183
BspT104I TTCGAA 3 cut(s) 575, 620, 1158
BsrFI RCCGGY 2 cut(s) 39, 53
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 39, 53
BssECI CCNNGG 3 cut(s) 249, 942, 1062
BssMI GATC 2 cut(s) 903, 1188
BssT1I CCWWGG 1 cut(s) 942
Bst2UI CCWGG 3 cut(s) 189, 202, 1211
Bst6I CTCTTC 3 cut(s) 228, 534, 592
BstBI TTCGAA 3 cut(s) 575, 620, 1158
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 759, 822
BstDSI CCRYGG 1 cut(s) 1062
BstEII GGTNACC 1 cut(s) 259
BstKTI GATC 2 cut(s) 906, 1191
BstMAI GTCTC 3 cut(s) 224, 225, 355
BstMBI GATC 2 cut(s) 903, 1188
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 189, 202, 1211
BstPAI GACNNNNGTC 2 cut(s) 347, 1082
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 5 cut(s) 187, 200, 249, 357, 1209
BstSFI CTRYAG 1 cut(s) 177
BstV2I GAAGAC 2 cut(s) 999, 1078
BstXI CCANNNNNNTGG 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 840
BsuRI GGCC 1 cut(s) 1214
BsuTUI ATCGAT 1 cut(s) 840
BtgI CCRYGG 1 cut(s) 1062
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 39, 53
Cfr13I GGNCC 1 cut(s) 342
ClaI ATCGAT 1 cut(s) 840
Csp6I GTAC 2 cut(s) 35, 661
CspCI CAANNNNNGTGG 4 cut(s) 682, 717, 1119, 1154
CviAII CATG 2 cut(s) 140, 911
CviQI GTAC 2 cut(s) 35, 661
DdeI CTNAG 2 cut(s) 759, 822
DpnI GATC 2 cut(s) 905, 1190
DpnII GATC 2 cut(s) 903, 1188
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 3 cut(s) 228, 534, 592
EarI CTCTTC 3 cut(s) 228, 534, 592
Eco130I CCWWGG 1 cut(s) 942
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 1072
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 3 cut(s) 187, 200, 1209
EcoT14I CCWWGG 1 cut(s) 942
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 942
Esp3I CGTCTC 2 cut(s) 224, 355
FaeI CATG 2 cut(s) 143, 914
FaiI YATR 8 cut(s) 49, 141, 377, 678, 735, 912, 1028, 1149
FalI AAGNNNNNCTT 2 cut(s) 967, 999
FaqI GGGAC 1 cut(s) 924
FatI CATG 2 cut(s) 139, 910
Fnu4HI GCNGC 1 cut(s) 372
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 1 cut(s) 372
FspBI CTAG 3 cut(s) 15, 92, 594
GluI GCNGC 1 cut(s) 372
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 1214
HapII CCGG 7 cut(s) 40, 54, 251, 340, 358, 368, 386
Hin1II CATG 2 cut(s) 143, 914
HincII GTYRAC 1 cut(s) 1095
HindII GTYRAC 1 cut(s) 1095
HpaII CCGG 7 cut(s) 40, 54, 251, 340, 358, 368, 386
HphI GGTGA 4 cut(s) 62, 253, 289, 532
Hpy166II GTNNAC 1 cut(s) 1095
Hpy188I TCNGA 7 cut(s) 66, 82, 318, 762, 813, 859, 928
Hpy188III TCNNGA 5 cut(s) 92, 227, 340, 395, 796
Hpy8I GTNNAC 1 cut(s) 1095
Hpy99I CGWCG 1 cut(s) 757
HpyCH4IV ACGT 1 cut(s) 60
HpyCH4V TGCA 6 cut(s) 51, 287, 639, 707, 781, 1231
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 759, 822
HpySE526I ACGT 1 cut(s) 60
Hsp92II CATG 2 cut(s) 143, 914
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 903, 1188
LmnI GCTCC 2 cut(s) 1030, 1066
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 15, 92, 594
MaeII ACGT 1 cut(s) 60
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 905, 1190
MboI GATC 2 cut(s) 903, 1188
MhlI GDGCHC 3 cut(s) 250, 613, 857
MluCI AATT 9 cut(s) 634, 709, 791, 862, 1001, 1017, 1035, 1106, 1120
MlyI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 751, 1124
MmeI TCCRAC 3 cut(s) 89, 341, 931
MnlI CCTC 9 cut(s) 355, 355, 460, 486, 511, 643, 826, 1039, 1174
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 8 cut(s) 117, 206, 525, 713, 891, 1020, 1038, 1240
MslI CAYNNNNRTG 2 cut(s) 333, 813
MspA1I CMGCKG 1 cut(s) 1053
MspI CCGG 7 cut(s) 40, 54, 251, 340, 358, 368, 386
MspR9I CCNGG 5 cut(s) 189, 202, 251, 359, 1211
MvaI CCWGG 3 cut(s) 189, 202, 1211
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 2 cut(s) 251, 359
NdeII GATC 2 cut(s) 903, 1188
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 143, 914
NlaIV GGNNCC 2 cut(s) 366, 1032
NspV TTCGAA 3 cut(s) 575, 620, 1158
OliI CACNNNNGTG 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 1058, 1155
Pfl23II CGTACG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 357
PkrI GCNGC 1 cut(s) 373
PleI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 751, 1123
PpsI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 751, 1123
PshAI GACNNNNGTC 2 cut(s) 347, 1082
PshBI ATTAAT 1 cut(s) 891
PsiI TTATAA 1 cut(s) 678
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 187, 200, 1209
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 3 cut(s) 187, 200, 1209
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 366, 1032
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 2 cut(s) 36, 662
RsaNI GTAC 2 cut(s) 35, 661
RseI CAYNNNNRTG 2 cut(s) 333, 813
SaqAI TTAA 8 cut(s) 117, 206, 525, 713, 891, 1020, 1038, 1240
SatI GCNGC 1 cut(s) 372
Sau3AI GATC 2 cut(s) 903, 1188
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 751, 1124
ScrFI CCNGG 5 cut(s) 189, 202, 251, 359, 1211
SduI GDGCHC 3 cut(s) 250, 613, 857
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 3 cut(s) 575, 620, 1158
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 333, 813
Sse9I AATT 9 cut(s) 634, 709, 791, 862, 1001, 1017, 1035, 1106, 1120
SsiI CCGC 4 cut(s) 331, 371, 728, 1053
SspI AATATT 1 cut(s) 932
SspMI CTAG 3 cut(s) 15, 92, 594
StyD4I CCNGG 5 cut(s) 187, 200, 249, 357, 1209
StyI CCWWGG 1 cut(s) 942
TaiI ACGT 1 cut(s) 63
TaqI TCGA 7 cut(s) 449, 575, 620, 670, 840, 1143, 1158
TaqII GACCGA 1 cut(s) 20
TasI AATT 9 cut(s) 634, 709, 791, 862, 1001, 1017, 1035, 1106, 1120
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 2 cut(s) 1058, 1155
Tru1I TTAA 8 cut(s) 117, 206, 525, 713, 891, 1020, 1038, 1240
Tru9I TTAA 8 cut(s) 117, 206, 525, 713, 891, 1020, 1038, 1240
TspDTI ATGAA 7 cut(s) 156, 552, 831, 927, 977, 1005, 1164
TspGWI ACGGA 2 cut(s) 337, 1079
VpaK11BI GGWCC 1 cut(s) 342
VspI ATTAAT 1 cut(s) 891
XapI RAATTY 3 cut(s) 709, 791, 862
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1069
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 3 cut(s) 15, 92, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.