AT5G02130
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012189
Physical Location & Seq
Reverse (-)
419658 .. 422068
2411 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02130.1

Sequence Viewer

Length: 1263 bp
ATGATTCGCGCAGCTGCCAAATTCTCCAGAGAAGCAGCGGCAACGATTCGTGGCCGCACGATCTCCGTTAGAGGAAACCTTATTCGATACTCGACGCCATTGAGATTGATTCACGGTGAAATCAGCGTTCCAAACGCGAATCATGTTGCTATTCAGATGGTTAATTACGCTCTTTCTCACGCTAGGTCACAAAAATCAGATGAATCTTATGCTCAAGGGATGCTAGTGCTTGAGCAGTGTCTTGGGAATCAACCTAACGATGATCAGGTTTCTCATGATTCTAAAGCAACAGTCTTGCTTGCCATGTCTGATCTTTTATACGAAAGTGGGAATAGTAGTGAGGCCATTGAACGCCTTAAGCAAGTCATGACTCTGACACACTCATCGTTGGCTATTAGAGTTGTTGCTGTGGAAGCCCTTGTTGGTCTGCTGATTCAGTCAGGACAGGATGATGCTTCATTGGATGTTGCTGACGAATTTCTGAAATTGGTAAAAGAGAGTGGCCATGAGAATCTTCAGGGTGTGGTTGCTACAGTTAAAGCGATCAAAGGCCTTGCTGAGCTTGTGAAAGGAAATATCGAATCCGCCGAATCTTTATTTCGAGGACTTGAGAATCATGAAAGCTGCAAAGGTAACATTGCACTTTCTTATGGTGAATACTTGCACGCCACTGGAAATTTTGAACTGGCAAAGGAGATGTATCAGAAGGCAATTCAAGGAGTGACAGAGACCAAAGAATCTATGTGTTCATGTAACATGAACTTGAAGGCAGTCTCACTGGCTGCCACATTTGCTCTGGGTCAGCTCGAGTCACACATTGGAAACTTTGGTGTTGCGGAGAAGACACTGACCGACGCATTGACAAAGACTGAGGAACATTACGGAGACAATCATCCTAAGGTTGGTGTGATTTTAACCGCTGTGGCTCTGATGTATGGAAACAAAGCAAAGCAAGAACGCTCAAGTTCTATCTTGATTCAAGAGGGCCTCTACAGAAAAGCATTGGAGCTCATGAAAGCACCTCCACTGGATTCAAAAGGGATAATAAACATGGAAAATCAAGAAGTAATAGCTTTAGCAAGAGCCGGGTATGCGGAGTTACTACTGATTCAAGAGAACAGAAAAAGCGAAGGAGAGAAAATGAAATCATGGGCCGAATCAGCGTGGAGAAACAAACGCATTTCTCTATCAGAAGCATTGACTCTCTCAGAGCCGTTAGGTAAAGTAGCAATCATAGATGCTCGCACCACTCGTGTACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_8

Protein Analysis

420

Amino Acids

45.76

Weight (kDa)

6.3

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 218 - 323 3.3e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 9, 137
AciI CCGC 6 cut(s) 38, 55, 585, 836, 918, 1094
AcoI YGGCCR 2 cut(s) 52, 502
AcsI RAATTY 3 cut(s) 20, 476, 676
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 1257
AfiI CCNNNNNNNGG 1 cut(s) 902
AflII CTTAAG 1 cut(s) 356
AgsI TTSAA 7 cut(s) 350, 683, 716, 766, 980, 1035, 1112
AjuI GAANNNNNNNTTGG 2 cut(s) 405, 437
AluBI AGCT 6 cut(s) 14, 562, 624, 805, 1009, 1073
AluI AGCT 6 cut(s) 14, 562, 624, 805, 1009, 1073
Alw21I GWGCWC 1 cut(s) 1011
Alw26I GTCTC 3 cut(s) 722, 778, 879
Ama87I CYCGRG 1 cut(s) 806
AoxI GGCC 6 cut(s) 52, 342, 502, 550, 985, 1152
ApeKI GCWGC 5 cut(s) 11, 14, 35, 624, 782
ApoI RAATTY 3 cut(s) 20, 476, 676
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 985, 1152
AsuC2I CCSGG 1 cut(s) 1087
AsuHPI GGTGA 2 cut(s) 128, 665
AvaI CYCGRG 1 cut(s) 806
AxyI CCTNAGG 1 cut(s) 897
BalI TGGCCA 1 cut(s) 504
BanII GRGCYC 1 cut(s) 1011
BauI CACGAG 1 cut(s) 1251
BbsI GAAGAC 1 cut(s) 848
Bbv12I GWGCWC 1 cut(s) 1011
BbvI GCAGC 4 cut(s) 23, 47, 611, 769
BccI CCATC 1 cut(s) 151
BceAI ACGGC 1 cut(s) 1198
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 1087
BcoDI GTCTC 3 cut(s) 722, 778, 879
BfaI CTAG 2 cut(s) 183, 224
BfmI CTRYAG 2 cut(s) 531, 991
BfrI CTTAAG 1 cut(s) 356
BisI GCNGC 7 cut(s) 12, 15, 36, 39, 55, 625, 783
BlpI GCTNAGC 1 cut(s) 558
BlsI GCNGC 7 cut(s) 13, 16, 37, 40, 56, 626, 784
Bme1390I CCNGG 1 cut(s) 1087
BmeT110I CYCGRG 1 cut(s) 806
BmgT120I GGNCC 2 cut(s) 985, 1152
BmrFI CCNGG 1 cut(s) 1087
BmsI GCATC 3 cut(s) 210, 442, 1228
BpiI GAAGAC 1 cut(s) 848
BpmI CTGGAG 1 cut(s) 10
Bpu1102I GCTNAGC 1 cut(s) 558
BpuEI CTTGAG 4 cut(s) 198, 251, 629, 946
BpuMI CCSGG 1 cut(s) 1087
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 722
Bsc4I CCNNNNNNNGG 1 cut(s) 902
Bse1I ACTGG 4 cut(s) 676, 690, 783, 1032
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 1 cut(s) 636
BseGI GGATG 4 cut(s) 225, 454, 469, 892
BseLI CCNNNNNNNGG 1 cut(s) 902
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 549, 861, 1221
BseNI ACTGG 4 cut(s) 676, 690, 783, 1032
BseXI GCAGC 4 cut(s) 23, 47, 611, 769
Bsh1236I CGCG 2 cut(s) 9, 137
BshFI GGCC 6 cut(s) 54, 344, 504, 552, 987, 1154
BsiHKAI GWGCWC 1 cut(s) 1011
BsiHKCI CYCGRG 1 cut(s) 806
BsiSI CCGG 1 cut(s) 1086
BslI CCNNNNNNNGG 1 cut(s) 902
BsmAI GTCTC 3 cut(s) 722, 778, 879
BsnI GGCC 6 cut(s) 54, 344, 504, 552, 987, 1154
Bso31I GGTCTC 1 cut(s) 722
BsoBI CYCGRG 1 cut(s) 806
Bsp1286I GDGCHC 1 cut(s) 1011
Bsp143I GATC 4 cut(s) 60, 262, 310, 543
Bsp1720I GCTNAGC 1 cut(s) 558
BspACI CCGC 6 cut(s) 38, 55, 585, 836, 918, 1094
BspANI GGCC 6 cut(s) 54, 344, 504, 552, 987, 1154
BspCNI CTCAG 3 cut(s) 550, 862, 1220
BspFNI CGCG 2 cut(s) 9, 137
BspHI TCATGA 4 cut(s) 274, 366, 616, 1011
BspTI CTTAAG 1 cut(s) 356
BspTNI GGTCTC 1 cut(s) 722
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 4 cut(s) 676, 690, 783, 1032
BssMI GATC 4 cut(s) 60, 262, 310, 543
BssNI GRCGYC 1 cut(s) 95
BssSI CACGAG 1 cut(s) 1251
Bst2BI CACGAG 1 cut(s) 1251
Bst4CI ACNGT 3 cut(s) 116, 292, 535
BstACI GRCGYC 1 cut(s) 95
BstAFI CTTAAG 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 300, 666, 1243
BstDEI CTNAG 4 cut(s) 558, 870, 897, 1207
BstF5I GGATG 4 cut(s) 225, 454, 469, 892
BstFNI CGCG 2 cut(s) 9, 137
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 4 cut(s) 63, 265, 313, 546
BstMAI GTCTC 3 cut(s) 722, 778, 879
BstMBI GATC 4 cut(s) 60, 262, 310, 543
BstMWI GCNNNNNNNGC 4 cut(s) 413, 791, 1091, 1160
BstSCI CCNGG 1 cut(s) 1085
BstSFI CTRYAG 2 cut(s) 531, 991
BstUI CGCG 2 cut(s) 9, 137
BstV1I GCAGC 4 cut(s) 23, 47, 611, 769
BstV2I GAAGAC 1 cut(s) 848
Bsu36I CCTNAGG 1 cut(s) 897
BsuRI GGCC 6 cut(s) 54, 344, 504, 552, 987, 1154
BtsCI GGATG 4 cut(s) 225, 454, 469, 892
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 5 cut(s) 242, 669, 776, 845, 1025
Cac8I GCNNGC 3 cut(s) 300, 666, 1243
CciI TCATGA 4 cut(s) 274, 366, 616, 1011
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 2 cut(s) 985, 1152
CseI GACGC 2 cut(s) 103, 863
Csp6I GTAC 1 cut(s) 1256
CviQI GTAC 1 cut(s) 1256
DdeI CTNAG 4 cut(s) 558, 870, 897, 1207
DpnI GATC 4 cut(s) 62, 264, 312, 545
DpnII GATC 4 cut(s) 60, 262, 310, 543
EaeI YGGCCR 2 cut(s) 52, 502
EciI GGCGGA 1 cut(s) 574
Ecl136II GAGCTC 1 cut(s) 1009
Eco147I AGGCCT 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 1011
Eco31I GGTCTC 1 cut(s) 722
Eco53kI GAGCTC 1 cut(s) 1009
Eco57I CTGAAG 1 cut(s) 500
Eco81I CCTNAGG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 806
EcoICRI GAGCTC 1 cut(s) 1009
EcoO109I RGGNCCY 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 1011
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 7 cut(s) 12, 15, 36, 39, 55, 625, 783
FokI GGATG 4 cut(s) 232, 461, 476, 879
FriOI GRGCYC 1 cut(s) 1011
Fsp4HI GCNGC 7 cut(s) 12, 15, 36, 39, 55, 625, 783
FspBI CTAG 2 cut(s) 183, 224
GlaI GCGC 1 cut(s) 10
GluI GCNGC 7 cut(s) 12, 15, 36, 39, 55, 625, 783
GsuI CTGGAG 1 cut(s) 10
HaeIII GGCC 6 cut(s) 54, 344, 504, 552, 987, 1154
HapII CCGG 1 cut(s) 1086
HgaI GACGC 2 cut(s) 103, 863
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HpaII CCGG 1 cut(s) 1086
HphI GGTGA 2 cut(s) 128, 665
Hpy166II GTNNAC 1 cut(s) 1256
Hpy188I TCNGA 9 cut(s) 156, 199, 310, 375, 483, 705, 930, 1192, 1210
Hpy8I GTNNAC 1 cut(s) 1256
Hpy99I CGWCG 2 cut(s) 97, 857
HpyAV CCTTC 3 cut(s) 700, 760, 1124
HpyCH4III ACNGT 3 cut(s) 116, 292, 535
HpyCH4V TGCA 3 cut(s) 627, 641, 664
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 791, 1091, 1160
HpyF3I CTNAG 4 cut(s) 558, 870, 897, 1207
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 60, 262, 310, 543
LmnI GCTCC 1 cut(s) 1006
Lsp1109I GCAGC 4 cut(s) 23, 47, 611, 769
LweI GCATC 3 cut(s) 210, 442, 1228
MaeI CTAG 2 cut(s) 183, 224
MaeIII GTNAC 6 cut(s) 186, 632, 721, 752, 810, 1098
MalI GATC 4 cut(s) 62, 264, 312, 545
MboI GATC 4 cut(s) 60, 262, 310, 543
MboII GAAGA 2 cut(s) 506, 853
MhlI GDGCHC 1 cut(s) 1011
MlsI TGGCCA 1 cut(s) 504
MluCI AATT 6 cut(s) 20, 163, 476, 485, 676, 711
MluNI TGGCCA 1 cut(s) 504
MlyI GAGTC 3 cut(s) 364, 818, 1195
MnlI CCTC 7 cut(s) 65, 334, 596, 865, 976, 998, 1032
Mox20I TGGCCA 1 cut(s) 504
MscI TGGCCA 1 cut(s) 504
MseI TTAA 4 cut(s) 162, 357, 537, 914
Msp20I TGGCCA 1 cut(s) 504
MspA1I CMGCKG 3 cut(s) 14, 38, 920
MspCI CTTAAG 1 cut(s) 356
MspI CCGG 1 cut(s) 1086
MspR9I CCNGG 1 cut(s) 1087
MvnI CGCG 2 cut(s) 9, 137
MwoI GCNNNNNNNGC 4 cut(s) 413, 791, 1091, 1160
NciI CCSGG 1 cut(s) 1087
NdeII GATC 4 cut(s) 60, 262, 310, 543
NmuCI GTSAC 3 cut(s) 186, 721, 810
PaeR7I CTCGAG 1 cut(s) 806
PagI TCATGA 4 cut(s) 274, 366, 616, 1011
PceI AGGCCT 1 cut(s) 552
PcsI WCGNNNNNNNCGW 2 cut(s) 585, 1249
PkrI GCNGC 7 cut(s) 13, 16, 37, 40, 56, 626, 784
PleI GAGTC 3 cut(s) 364, 817, 1195
PpsI GAGTC 3 cut(s) 364, 817, 1195
Psp124BI GAGCTC 1 cut(s) 1011
PspPI GGNCC 2 cut(s) 985, 1152
PspXI VCTCGAGB 1 cut(s) 806
PvuII CAGCTG 1 cut(s) 14
RsaI GTAC 1 cut(s) 1257
RsaNI GTAC 1 cut(s) 1256
SacI GAGCTC 1 cut(s) 1011
SaqAI TTAA 4 cut(s) 162, 357, 537, 914
SatI GCNGC 7 cut(s) 12, 15, 36, 39, 55, 625, 783
Sau3AI GATC 4 cut(s) 60, 262, 310, 543
Sau96I GGNCC 2 cut(s) 985, 1152
SchI GAGTC 3 cut(s) 364, 818, 1195
ScrFI CCNGG 1 cut(s) 1087
SduI GDGCHC 1 cut(s) 1011
SfaNI GCATC 3 cut(s) 210, 442, 1228
SfcI CTRYAG 2 cut(s) 531, 991
Sfr274I CTCGAG 1 cut(s) 806
SlaI CTCGAG 1 cut(s) 806
SmlI CTYRAG 6 cut(s) 213, 230, 356, 608, 806, 961
SmoI CTYRAG 6 cut(s) 213, 230, 356, 608, 806, 961
Sse9I AATT 6 cut(s) 20, 163, 476, 485, 676, 711
SseBI AGGCCT 1 cut(s) 552
SsiI CCGC 6 cut(s) 38, 55, 585, 836, 918, 1094
SspMI CTAG 2 cut(s) 183, 224
SstI GAGCTC 1 cut(s) 1011
StuI AGGCCT 1 cut(s) 552
StyD4I CCNGG 1 cut(s) 1085
TaaI ACNGT 3 cut(s) 116, 292, 535
TaqI TCGA 5 cut(s) 85, 92, 579, 601, 807
TaqII GACCGA 1 cut(s) 866
TasI AATT 6 cut(s) 20, 163, 476, 485, 676, 711
TatI WGTACW 1 cut(s) 1255
TauI GCSGC 2 cut(s) 41, 57
Tru1I TTAA 4 cut(s) 162, 357, 537, 914
Tru9I TTAA 4 cut(s) 162, 357, 537, 914
TscAI CASTG 5 cut(s) 242, 676, 783, 852, 1032
TseFI GTSAC 3 cut(s) 186, 721, 810
TseI GCWGC 5 cut(s) 11, 14, 35, 624, 782
Tsp45I GTSAC 3 cut(s) 186, 721, 810
TspDTI ATGAA 7 cut(s) 216, 447, 633, 738, 773, 1028, 1157
TspGWI ACGGA 2 cut(s) 55, 897
TspRI CASTG 5 cut(s) 242, 676, 783, 852, 1032
Vha464I CTTAAG 1 cut(s) 356
XapI RAATTY 3 cut(s) 20, 476, 676
XcmI CCANNNNNNNNNTGG 1 cut(s) 793
XhoI CTCGAG 1 cut(s) 806
XspI CTAG 2 cut(s) 183, 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.