MD12G1145400.v1.1
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0012189
Physical Location & Seq
Forward (+)
22460083 .. 22463787
3705 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1145400.v1.1.491

Sequence Viewer

Length: 1137 bp
ATGATCAACTACGCTCTCTCTCACGCTAGGTCTCAGAAATCAGATGAATCGTATGCGCAAGGTGTGCTTGTACTGGAACAGTGCCTTTCGACTCAGCCGAGCGAAGGGCAAGACCCTGCTGGTGATAATTCAAGGGGAATGGTGTTGTTGGCCATGTCCACTTTATCATCTGAAAGAGGAAATTTCGGTGAAGCAATGGAGAAGCTGCAAAAGGTTCAAGATTTAACCAACTCTTCAGTTGGTGTTAGACTTGCCGCTTTGGACGCTCTTGTCGGACTTCACTTAGAGTTAGAGCAGGATGATACTTCATCAGTGCTCGCAGATAAATGCTTAGAACTGTTGGAGAACAATGAGCCTGGATCTAATGGTGGAGATTTTATAAATGCTCGTGCTAAAGCAGTAAAAGGGCTTGTTGAACTTGTCCATGGTAATACTGCATCAGCTGAATCGTTCTTTCAAGGACTTAAGGACAATCCGGCAATCACTGGTAGTACTGCTTTATCCTATGGAGAATTCTTGCATGCAACGCAGAACTTTTCATTGGCAAAGGATGTCTACCAGAATGTTATTCAAGGGGTGTCCAAGAATGAAGAGTATAGTAATCCGAATGCATTAGCAGCCAGTAATATGTCTGCTGAGGAAGTTTCCCTAGCCGCCACATGTGCTTTGGGACAACTTGAGGCTCACTTGGGGAACTTTGCCGATGCCGAGGAGATATTGACTAAGGCTTTAACTATAACCGAGGAACGTTTTGGCTCTCATCACCCCAAGGTTGGTGTTGTTTTAACCTGCATAGCTCTCATGTTTCGACGCAAAGCAATGCTAGAGCATTCTAGTGCTCTTTTGATTCAAGAGGGACTTTATAGAAGGGCAATAGAGTTGCTGAAACCCCCACCATTGGACTCAGAAGGTACAGAAGCAAAGGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTGGGTATGCTGAAGTGCTTTGTATCCAACAGAACCGAAAGGATCAAGGTGAAAAAGCAAAGAGTTGGGCGGAGGCTGTATGGAGGAACCGCCGGCTGTCATTGGCCGAAGCACTGGACGTATCTAATACTAGTTCAGCAGTTCCAATTATCGATGCTCGAATCAGCAGGGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

379

Amino Acids

40.73

Weight (kDa)

5.06

Isoelectric Point (pI)

32.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 219 - 276 1.2e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 222 - 279 9e-07 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 380
AasI GACNNNNNNGTC 1 cut(s) 269
Acc16I TGCGCA 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 797
AccI GTMKAC 1 cut(s) 555
AciI CCGC 4 cut(s) 255, 654, 1028, 1048
AclI AACGTT 1 cut(s) 748
AclWI GGATC 2 cut(s) 367, 1008
AcoI YGGCCR 2 cut(s) 150, 1062
AcsI RAATTY 2 cut(s) 181, 512
AcuI CTGAAG 2 cut(s) 219, 990
AfaI GTAC 3 cut(s) 72, 493, 913
AfiI CCNNNNNNNGG 3 cut(s) 104, 773, 898
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 659
AgsI TTSAA 6 cut(s) 132, 218, 416, 458, 572, 851
AhlI ACTAGT 1 cut(s) 1088
AjnI CCWGG 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 524, 556
AluBI AGCT 3 cut(s) 205, 443, 797
AluI AGCT 3 cut(s) 205, 443, 797
Alw21I GWGCWC 2 cut(s) 318, 841
Alw26I GTCTC 1 cut(s) 36
AlwI GGATC 2 cut(s) 367, 1008
AoxI GGCC 3 cut(s) 150, 945, 1062
ApeKI GCWGC 2 cut(s) 205, 617
ApoI RAATTY 2 cut(s) 181, 512
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 2 cut(s) 946, 1129
AsuHPI GGTGA 4 cut(s) 134, 200, 755, 1019
AvaII GGWCC 1 cut(s) 1129
BalI TGGCCA 1 cut(s) 152
BauI CACGAG 1 cut(s) 387
Bbv12I GWGCWC 2 cut(s) 318, 841
BbvCI CCTCAGC 1 cut(s) 636
BbvI GCAGC 2 cut(s) 192, 629
BciT130I CCWGG 1 cut(s) 357
BciVI GTATCC 1 cut(s) 992
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 36
BcuI ACTAGT 1 cut(s) 1088
BfaI CTAG 5 cut(s) 27, 650, 824, 834, 1089
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 797
BfuI GTATCC 1 cut(s) 992
BisI GCNGC 4 cut(s) 206, 255, 618, 654
BlsI GCNGC 4 cut(s) 207, 256, 619, 655
BmcAI AGTACT 1 cut(s) 493
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 1129
BmgT120I GGNCC 2 cut(s) 946, 1129
BmiI GGNNCC 2 cut(s) 1046, 1130
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 3 cut(s) 446, 694, 1102
Bpu10I CCTNAGC 1 cut(s) 636
BpuEI CTTGAG 1 cut(s) 698
Bsa29I ATCGAT 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 36
BsaJI CCNNGG 4 cut(s) 424, 708, 741, 768
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 773, 898
Bse118I RCCGGY 1 cut(s) 1050
Bse1I ACTGG 4 cut(s) 78, 490, 621, 1077
Bse3DI GCAATG 2 cut(s) 201, 825
BseBI CCWGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 1110
BseDI CCNNGG 4 cut(s) 424, 708, 741, 768
BseGI GGATG 2 cut(s) 304, 556
BseLI CCNNNNNNNGG 3 cut(s) 104, 773, 898
BseMI GCAATG 2 cut(s) 201, 825
BseMII CTCAG 4 cut(s) 47, 107, 627, 918
BseNI ACTGG 4 cut(s) 78, 490, 621, 1077
BseRI GAGGAG 1 cut(s) 725
BseXI GCAGC 2 cut(s) 192, 629
BshFI GGCC 3 cut(s) 152, 947, 1064
BshVI ATCGAT 1 cut(s) 1110
BsiHKAI GWGCWC 2 cut(s) 318, 841
BsiSI CCGG 2 cut(s) 476, 1051
BslFI GGGAC 2 cut(s) 684, 870
BslI CCNNNNNNNGG 3 cut(s) 104, 773, 898
BsmAI GTCTC 1 cut(s) 36
BsmFI GGGAC 2 cut(s) 684, 870
BsmI GAATGC 2 cut(s) 613, 829
BsnI GGCC 3 cut(s) 152, 947, 1064
Bso31I GGTCTC 1 cut(s) 36
Bsp1286I GDGCHC 2 cut(s) 318, 841
Bsp143I GATC 3 cut(s) 3, 359, 1000
Bsp19I CCATGG 1 cut(s) 424
BspACI CCGC 4 cut(s) 255, 654, 1028, 1048
BspANI GGCC 3 cut(s) 152, 947, 1064
BspCNI CTCAG 4 cut(s) 46, 106, 628, 917
BspDI ATCGAT 1 cut(s) 1110
BspLI GGNNCC 2 cut(s) 1046, 1130
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 2 cut(s) 367, 1008
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 201, 825
BsrFI RCCGGY 1 cut(s) 1050
BsrI ACTGG 4 cut(s) 78, 490, 621, 1077
BssAI RCCGGY 1 cut(s) 1050
BssECI CCNNGG 4 cut(s) 424, 708, 741, 768
BssMI GATC 3 cut(s) 3, 359, 1000
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 424, 768
Bst2BI CACGAG 1 cut(s) 387
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 2 cut(s) 81, 339
Bst6I CTCTTC 2 cut(s) 238, 585
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 64
BstC8I GCNNGC 3 cut(s) 318, 522, 1052
BstDEI CTNAG 7 cut(s) 33, 93, 283, 331, 636, 723, 904
BstDSI CCRYGG 1 cut(s) 424
BstF5I GGATG 2 cut(s) 304, 556
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 3 cut(s) 6, 362, 1003
BstMAI GTCTC 1 cut(s) 36
BstMBI GATC 3 cut(s) 3, 359, 1000
BstMWI GCNNNNNNNGC 5 cut(s) 64, 263, 526, 617, 662
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 2 cut(s) 524, 663
BstSCI CCNGG 1 cut(s) 355
BstV1I GCAGC 2 cut(s) 192, 629
BstX2I RGATCY 1 cut(s) 359
BstYI RGATCY 1 cut(s) 359
Bsu15I ATCGAT 1 cut(s) 1110
BsuI GTATCC 1 cut(s) 992
BsuRI GGCC 3 cut(s) 152, 947, 1064
BsuTUI ATCGAT 1 cut(s) 1110
BtgI CCRYGG 1 cut(s) 424
BtsCI GGATG 2 cut(s) 304, 556
BtsIMutI CAGTG 4 cut(s) 86, 318, 483, 1070
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 3 cut(s) 318, 522, 1052
CfoI GCGC 1 cut(s) 58
Cfr10I RCCGGY 1 cut(s) 1050
Cfr13I GGNCC 2 cut(s) 946, 1129
ClaI ATCGAT 1 cut(s) 1110
CseI GACGC 2 cut(s) 272, 819
Csp6I GTAC 3 cut(s) 71, 492, 912
CviAII CATG 5 cut(s) 154, 425, 521, 660, 802
CviQI GTAC 3 cut(s) 71, 492, 912
DdeI CTNAG 7 cut(s) 33, 93, 283, 331, 636, 723, 904
DpnI GATC 3 cut(s) 5, 361, 1002
DpnII GATC 3 cut(s) 3, 359, 1000
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
EaeI YGGCCR 2 cut(s) 150, 1062
Eam1104I CTCTTC 2 cut(s) 238, 585
EarI CTCTTC 2 cut(s) 238, 585
EciI GGCGGA 1 cut(s) 1043
Eco130I CCWWGG 2 cut(s) 424, 768
Eco31I GGTCTC 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 1129
Eco57I CTGAAG 2 cut(s) 219, 990
EcoO109I RGGNCCY 1 cut(s) 1129
EcoRI GAATTC 1 cut(s) 512
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 424, 768
EcoT22I ATGCAT 1 cut(s) 613
ErhI CCWWGG 2 cut(s) 424, 768
FaeI CATG 5 cut(s) 157, 428, 524, 663, 805
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 843, 875
FaqI GGGAC 2 cut(s) 684, 870
FatI CATG 5 cut(s) 153, 424, 520, 659, 801
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 4 cut(s) 206, 255, 618, 654
FokI GGATG 2 cut(s) 311, 563
Fsp4HI GCNGC 4 cut(s) 206, 255, 618, 654
FspBI CTAG 5 cut(s) 27, 650, 824, 834, 1089
FspI TGCGCA 1 cut(s) 57
GlaI GCGC 1 cut(s) 57
GluI GCNGC 4 cut(s) 206, 255, 618, 654
HaeIII GGCC 3 cut(s) 152, 947, 1064
HapII CCGG 2 cut(s) 476, 1051
HgaI GACGC 2 cut(s) 272, 819
HhaI GCGC 1 cut(s) 58
Hin1II CATG 5 cut(s) 157, 428, 524, 663, 805
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 6 cut(s) 47, 91, 446, 847, 902, 1119
HpaII CCGG 2 cut(s) 476, 1051
HphI GGTGA 4 cut(s) 134, 200, 755, 1019
Hpy166II GTNNAC 2 cut(s) 159, 556
Hpy188I TCNGA 6 cut(s) 36, 43, 172, 275, 606, 907
Hpy188III TCNNGA 2 cut(s) 218, 851
Hpy8I GTNNAC 2 cut(s) 159, 556
Hpy99I CGWCG 1 cut(s) 813
HpyAV CCTTC 3 cut(s) 98, 861, 902
HpyCH4III ACNGT 2 cut(s) 81, 339
HpyCH4IV ACGT 2 cut(s) 748, 1077
HpyCH4V TGCA 7 cut(s) 208, 437, 520, 524, 611, 792, 953
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 263, 526, 617, 662
HpyF3I CTNAG 7 cut(s) 33, 93, 283, 331, 636, 723, 904
HpySE526I ACGT 2 cut(s) 748, 1077
Hsp92II CATG 5 cut(s) 157, 428, 524, 663, 805
HspAI GCGC 1 cut(s) 56
KroI GCCGGC 1 cut(s) 1050
KroNI GCCGGC 1 cut(s) 1052
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 359, 1000
Lsp1109I GCAGC 2 cut(s) 192, 629
LweI GCATC 3 cut(s) 446, 694, 1102
MaeI CTAG 5 cut(s) 27, 650, 824, 834, 1089
MaeII ACGT 2 cut(s) 748, 1077
MalI GATC 3 cut(s) 5, 361, 1002
MboI GATC 3 cut(s) 3, 359, 1000
MboII GAAGA 2 cut(s) 225, 602
MflI RGATCY 1 cut(s) 359
MhlI GDGCHC 2 cut(s) 318, 841
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 4 cut(s) 127, 181, 512, 1104
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 2 cut(s) 85, 896
MmeI TCCRAC 3 cut(s) 253, 321, 1009
MnlI CCTC 9 cut(s) 170, 631, 673, 703, 736, 847, 950, 1024, 1035
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 613
MroNI GCCGGC 1 cut(s) 1050
MscI TGGCCA 1 cut(s) 152
MseI TTAA 4 cut(s) 224, 465, 731, 785
MslI CAYNNNNRTG 1 cut(s) 834
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 443
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 476, 1051
MspR9I CCNGG 1 cut(s) 357
Mva1269I GAATGC 2 cut(s) 613, 829
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 5 cut(s) 64, 263, 526, 617, 662
NaeI GCCGGC 1 cut(s) 1052
NcoI CCATGG 1 cut(s) 424
NdeII GATC 3 cut(s) 3, 359, 1000
NgoMIV GCCGGC 1 cut(s) 1050
NlaIII CATG 5 cut(s) 157, 428, 524, 663, 805
NlaIV GGNNCC 2 cut(s) 1046, 1130
NmeAIII GCCGAG 2 cut(s) 123, 733
NsbI TGCGCA 1 cut(s) 57
NsiI ATGCAT 1 cut(s) 613
NspI RCATGY 2 cut(s) 524, 663
PaeI GCATGC 1 cut(s) 524
PciI ACATGT 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 95
PctI GAATGC 2 cut(s) 613, 829
PdiI GCCGGC 1 cut(s) 1052
PfeI GAWTC 4 cut(s) 47, 446, 847, 1119
PkrI GCNGC 4 cut(s) 207, 256, 619, 655
PleI GAGTC 2 cut(s) 85, 896
PpsI GAGTC 2 cut(s) 85, 896
PpuMI RGGWCCY 1 cut(s) 1129
PscI ACATGT 1 cut(s) 659
PsiI TTATAA 1 cut(s) 380
Psp1406I AACGTT 1 cut(s) 748
Psp5II RGGWCCY 1 cut(s) 1129
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 1046, 1130
PspPI GGNCC 2 cut(s) 946, 1129
PspPPI RGGWCCY 1 cut(s) 1129
PsuI RGATCY 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 443
RsaI GTAC 3 cut(s) 72, 493, 913
RsaNI GTAC 3 cut(s) 71, 492, 912
RseI CAYNNNNRTG 1 cut(s) 834
SaqAI TTAA 4 cut(s) 224, 465, 731, 785
SatI GCNGC 4 cut(s) 206, 255, 618, 654
Sau3AI GATC 3 cut(s) 3, 359, 1000
Sau96I GGNCC 2 cut(s) 946, 1129
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 2 cut(s) 85, 896
ScrFI CCNGG 1 cut(s) 357
SduI GDGCHC 2 cut(s) 318, 841
SfaNI GCATC 3 cut(s) 446, 694, 1102
SinI GGWCC 1 cut(s) 1129
SmiMI CAYNNNNRTG 1 cut(s) 834
SmlI CTYRAG 2 cut(s) 464, 677
SmoI CTYRAG 2 cut(s) 464, 677
SpeI ACTAGT 1 cut(s) 1088
SphI GCATGC 1 cut(s) 524
Sse9I AATT 4 cut(s) 127, 181, 512, 1104
SsiI CCGC 4 cut(s) 255, 654, 1028, 1048
SspMI CTAG 5 cut(s) 27, 650, 824, 834, 1089
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 2 cut(s) 424, 768
TaaI ACNGT 2 cut(s) 81, 339
TaiI ACGT 2 cut(s) 751, 1080
TaqI TCGA 4 cut(s) 89, 808, 1110, 1117
TasI AATT 4 cut(s) 127, 181, 512, 1104
TatI WGTACW 2 cut(s) 70, 491
TauI GCSGC 2 cut(s) 257, 656
TfiI GAWTC 4 cut(s) 47, 446, 847, 1119
Tru1I TTAA 4 cut(s) 224, 465, 731, 785
Tru9I TTAA 4 cut(s) 224, 465, 731, 785
TscAI CASTG 4 cut(s) 86, 318, 490, 1077
TseI GCWGC 2 cut(s) 205, 617
TspDTI ATGAA 4 cut(s) 60, 297, 528, 603
TspRI CASTG 4 cut(s) 86, 318, 490, 1077
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 1 cut(s) 1129
XapI RAATTY 2 cut(s) 181, 512
XceI RCATGY 2 cut(s) 524, 663
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmiI GTMKAC 1 cut(s) 555
XspI CTAG 5 cut(s) 27, 650, 824, 834, 1089
ZrmI AGTACT 1 cut(s) 493
Zsp2I ATGCAT 1 cut(s) 613
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.