pycom04g12060
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0012189
Physical Location & Seq
Forward (+)
15020909 .. 15023217
2309 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12060.8

Sequence Viewer

Length: 999 bp
ATGGTGTTATTGGCCATGTCCACTTTATCATCTGAAAGAGGAAATTTTGATGAAGCAATGGAGAAACTGCAAAAGGTTCAAGATTTAACCAGCTGTTCATTTGGTGTAAGGGTTGCGGCCTTGGAGGCTCTTGTCGGACTTCACTTAGAGTTAGAGCAGGATGATACTTCATCAGTGCTCGCAGATAAATGCTTAGAACTGTTGGTGAAGAATGAGCCTGAATCTAATGGTGGAGATTTTATAAATGCTCGCGCTAGAGCAGTAAAAGGGCTTGTTGAACTTGTCCATGGTAATGCTGCATCAGCTGAGTCGTTCTTTCAAGGACTTAAGGACAACCAGGCAATCACCGGTAGTAATGCTTTATCCTATGGAGAATTCTTGCACGCAACACAGAACTTTTCATTAGCAAAGGATGTCTACCAGAATGTTATTCAAGGGGGGTCAAAGAACGAAGAGCTTGGTAACTCAAATGCATTAGCAGCCTGTAATATGTCAGCAGAGGAAGTTTCCTTAGCGGCCACATGTGCTTTGGGACAACTTGAGGCTCATTTGGGAAACTTTGCTGATGCCGAGGAGATATTGACCAAGGCTTTAACAATAACAGAGGAACGTTTTGGTTCTCATCACCCCAGGGTTGGTGTTGTTTTAACCTGCATAGCTCTCATGTTTCGACGTAAAGCAATGCTAGAGCATTCTAGTGCTCTTTTGATTCAAGAGGGACTTTATAGAAGGGCAATAGAGTTGCTGAAAGCCCCACCATTGGACGCAGAAGGTACAGAAGCAAATGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGCGGGTATGCCGAAGTGCTTTGTGTCCAAAAGAACCGAAAGGATCAAGGTGAAAAAGTGAAGGGTTGGGCGGAGGCTGCATGGAGGAACCGCCGGATGTCATTGGCCGAAGCACTGGACATATCTAATACTAGTTCAGCGGTTCCAATTATAGATGCTCGAATCAGCAGGGTACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10 TPR_7

Protein Analysis

333

Amino Acids

35.84

Weight (kDa)

5.16

Isoelectric Point (pI)

31.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
Acc36I ACCTGC 1 cut(s) 659
AccI GTMKAC 1 cut(s) 417
AccII CGCG 1 cut(s) 252
AciI CCGC 6 cut(s) 116, 515, 822, 890, 910, 959
AclI AACGTT 1 cut(s) 610
AclWI GGATC 1 cut(s) 870
AcoI YGGCCR 3 cut(s) 12, 516, 924
AcsI RAATTY 2 cut(s) 43, 374
AfaI GTAC 2 cut(s) 775, 993
AfiI CCNNNNNNNGG 2 cut(s) 635, 760
AflII CTTAAG 1 cut(s) 326
AflIII ACRYGT 1 cut(s) 521
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 5 cut(s) 80, 278, 320, 434, 713
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 2 cut(s) 336, 629
AluBI AGCT 4 cut(s) 93, 305, 457, 659
AluI AGCT 4 cut(s) 93, 305, 457, 659
Alw21I GWGCWC 2 cut(s) 180, 703
AlwI GGATC 1 cut(s) 870
AoxI GGCC 5 cut(s) 12, 117, 516, 807, 924
ApeKI GCWGC 3 cut(s) 296, 479, 896
ApoI RAATTY 2 cut(s) 43, 374
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 1 cut(s) 808
AsuHPI GGTGA 4 cut(s) 217, 337, 617, 881
BalI TGGCCA 1 cut(s) 14
Bbv12I GWGCWC 2 cut(s) 180, 703
BbvI GCAGC 3 cut(s) 283, 491, 883
BciT130I CCWGG 2 cut(s) 338, 631
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 4 cut(s) 255, 686, 696, 951
BfrI CTTAAG 1 cut(s) 326
BfuAI ACCTGC 1 cut(s) 659
BglI GCCNNNNNGGC 1 cut(s) 125
BisI GCNGC 5 cut(s) 117, 297, 480, 516, 897
BlsI GCNGC 5 cut(s) 118, 298, 481, 517, 898
Bme1390I CCNGG 2 cut(s) 338, 631
BmgT120I GGNCC 1 cut(s) 808
BmiI GGNNCC 2 cut(s) 908, 963
BmrFI CCNGG 2 cut(s) 338, 631
BmsI GCATC 3 cut(s) 308, 556, 964
Bpu10I CCTNAGC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 560
BsaJI CCNNGG 6 cut(s) 120, 286, 570, 585, 629, 630
BsaWI WCCGGW 1 cut(s) 347
Bsc4I CCNNNNNNNGG 2 cut(s) 635, 760
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 939
Bse3DI GCAATG 2 cut(s) 63, 687
BseBI CCWGG 2 cut(s) 338, 631
BseDI CCNNGG 6 cut(s) 120, 286, 570, 585, 629, 630
BseGI GGATG 3 cut(s) 166, 418, 921
BseLI CCNNNNNNNGG 2 cut(s) 635, 760
BseMI GCAATG 2 cut(s) 63, 687
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 1 cut(s) 587
BseXI GCAGC 3 cut(s) 283, 491, 883
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 5 cut(s) 14, 119, 518, 809, 926
BshTI ACCGGT 1 cut(s) 347
BsiHKAI GWGCWC 2 cut(s) 180, 703
BsiSI CCGG 2 cut(s) 348, 913
BslFI GGGAC 2 cut(s) 546, 732
BslI CCNNNNNNNGG 2 cut(s) 635, 760
BsmFI GGGAC 2 cut(s) 546, 732
BsmI GAATGC 1 cut(s) 691
BsnI GGCC 5 cut(s) 14, 119, 518, 809, 926
Bsp1286I GDGCHC 2 cut(s) 180, 703
Bsp143I GATC 1 cut(s) 862
Bsp19I CCATGG 1 cut(s) 286
BspACI CCGC 6 cut(s) 116, 515, 822, 890, 910, 959
BspANI GGCC 5 cut(s) 14, 119, 518, 809, 926
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 2 cut(s) 908, 963
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 1 cut(s) 870
BspQI GCTCTTC 1 cut(s) 447
BspTI CTTAAG 1 cut(s) 326
BsrDI GCAATG 2 cut(s) 63, 687
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 6 cut(s) 120, 286, 570, 585, 629, 630
BssMI GATC 1 cut(s) 862
BssT1I CCWWGG 3 cut(s) 120, 286, 585
Bst2UI CCWGG 2 cut(s) 338, 631
Bst4CI ACNGT 2 cut(s) 201, 996
Bst6I CTCTTC 1 cut(s) 447
BstAFI CTTAAG 1 cut(s) 326
BstC8I GCNNGC 3 cut(s) 180, 250, 384
BstDEI CTNAG 4 cut(s) 145, 193, 306, 511
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 3 cut(s) 166, 418, 921
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 1 cut(s) 865
BstMBI GATC 1 cut(s) 862
BstMWI GCNNNNNNNGC 5 cut(s) 125, 302, 479, 524, 896
BstNI CCWGG 2 cut(s) 338, 631
BstNSI RCATGY 1 cut(s) 525
BstSCI CCNGG 2 cut(s) 336, 629
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 3 cut(s) 283, 491, 883
BsuRI GGCC 5 cut(s) 14, 119, 518, 809, 926
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 3 cut(s) 166, 418, 921
BtsIMutI CAGTG 2 cut(s) 180, 932
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 3 cut(s) 180, 250, 384
CfoI GCGC 1 cut(s) 254
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 808
CseI GACGC 1 cut(s) 773
Csp6I GTAC 2 cut(s) 774, 992
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 5 cut(s) 16, 287, 522, 664, 900
CviQI GTAC 2 cut(s) 774, 992
DdeI CTNAG 4 cut(s) 145, 193, 306, 511
DpnI GATC 1 cut(s) 864
DpnII GATC 1 cut(s) 862
EaeI YGGCCR 3 cut(s) 12, 516, 924
Eam1104I CTCTTC 1 cut(s) 447
EarI CTCTTC 1 cut(s) 447
EciI GGCGGA 1 cut(s) 905
Eco130I CCWWGG 3 cut(s) 120, 286, 585
EcoRI GAATTC 1 cut(s) 374
EcoRII CCWGG 2 cut(s) 336, 629
EcoT14I CCWWGG 3 cut(s) 120, 286, 585
EcoT22I ATGCAT 1 cut(s) 475
ErhI CCWWGG 3 cut(s) 120, 286, 585
FaeI CATG 5 cut(s) 19, 290, 525, 667, 903
FalI AAGNNNNNCTT 2 cut(s) 705, 737
FaqI GGGAC 2 cut(s) 546, 732
FatI CATG 5 cut(s) 15, 286, 521, 663, 899
FauI CCCGC 1 cut(s) 815
FblI GTMKAC 1 cut(s) 417
Fnu4HI GCNGC 5 cut(s) 117, 297, 480, 516, 897
FokI GGATG 3 cut(s) 173, 425, 928
Fsp4HI GCNGC 5 cut(s) 117, 297, 480, 516, 897
FspBI CTAG 4 cut(s) 255, 686, 696, 951
GlaI GCGC 1 cut(s) 253
GluI GCNGC 5 cut(s) 117, 297, 480, 516, 897
HaeIII GGCC 5 cut(s) 14, 119, 518, 809, 926
HapII CCGG 2 cut(s) 348, 913
HgaI GACGC 1 cut(s) 773
HhaI GCGC 1 cut(s) 254
Hin1II CATG 5 cut(s) 19, 290, 525, 667, 903
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 4 cut(s) 221, 308, 709, 981
HpaII CCGG 2 cut(s) 348, 913
HphI GGTGA 4 cut(s) 217, 337, 617, 881
Hpy166II GTNNAC 2 cut(s) 21, 418
Hpy188I TCNGA 2 cut(s) 34, 137
Hpy188III TCNNGA 2 cut(s) 80, 713
Hpy8I GTNNAC 2 cut(s) 21, 418
Hpy99I CGWCG 1 cut(s) 675
HpyAV CCTTC 3 cut(s) 723, 764, 874
HpyCH4III ACNGT 2 cut(s) 201, 996
HpyCH4IV ACGT 2 cut(s) 610, 673
HpyCH4V TGCA 7 cut(s) 70, 299, 382, 473, 654, 815, 899
HpyF10VI GCNNNNNNNGC 5 cut(s) 125, 302, 479, 524, 896
HpyF3I CTNAG 4 cut(s) 145, 193, 306, 511
HpySE526I ACGT 2 cut(s) 610, 673
Hsp92II CATG 5 cut(s) 19, 290, 525, 667, 903
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 1 cut(s) 862
LguI GCTCTTC 1 cut(s) 447
Lsp1109I GCAGC 3 cut(s) 283, 491, 883
LweI GCATC 3 cut(s) 308, 556, 964
MaeI CTAG 4 cut(s) 255, 686, 696, 951
MaeII ACGT 2 cut(s) 610, 673
MaeIII GTNAC 1 cut(s) 461
MalI GATC 1 cut(s) 864
MboI GATC 1 cut(s) 862
MboII GAAGA 2 cut(s) 220, 464
MhlI GDGCHC 2 cut(s) 180, 703
MlsI TGGCCA 1 cut(s) 14
MluCI AATT 3 cut(s) 43, 374, 966
MluNI TGGCCA 1 cut(s) 14
MlyI GAGTC 1 cut(s) 317
MmeI TCCRAC 1 cut(s) 115
Mox20I TGGCCA 1 cut(s) 14
Mph1103I ATGCAT 1 cut(s) 475
MscI TGGCCA 1 cut(s) 14
MseI TTAA 4 cut(s) 86, 327, 593, 647
MslI CAYNNNNRTG 2 cut(s) 291, 696
Msp20I TGGCCA 1 cut(s) 14
MspA1I CMGCKG 3 cut(s) 93, 305, 959
MspCI CTTAAG 1 cut(s) 326
MspI CCGG 2 cut(s) 348, 913
MspR9I CCNGG 2 cut(s) 338, 631
Mva1269I GAATGC 1 cut(s) 691
MvaI CCWGG 2 cut(s) 338, 631
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 5 cut(s) 125, 302, 479, 524, 896
NcoI CCATGG 1 cut(s) 286
NdeII GATC 1 cut(s) 862
NlaIII CATG 5 cut(s) 19, 290, 525, 667, 903
NlaIV GGNNCC 2 cut(s) 908, 963
NmeAIII GCCGAG 1 cut(s) 595
NsiI ATGCAT 1 cut(s) 475
NspI RCATGY 1 cut(s) 525
PasI CCCWGGG 1 cut(s) 630
PciI ACATGT 1 cut(s) 521
PciSI GCTCTTC 1 cut(s) 447
PctI GAATGC 1 cut(s) 691
PfeI GAWTC 3 cut(s) 221, 709, 981
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 5 cut(s) 118, 298, 481, 517, 898
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PscI ACATGT 1 cut(s) 521
PsiI TTATAA 1 cut(s) 242
Psp1406I AACGTT 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 336, 629
PspGI CCWGG 2 cut(s) 336, 629
PspN4I GGNNCC 2 cut(s) 908, 963
PspPI GGNCC 1 cut(s) 808
PvuII CAGCTG 2 cut(s) 93, 305
RsaI GTAC 2 cut(s) 775, 993
RsaNI GTAC 2 cut(s) 774, 992
RseI CAYNNNNRTG 2 cut(s) 291, 696
SapI GCTCTTC 1 cut(s) 447
SaqAI TTAA 4 cut(s) 86, 327, 593, 647
SatI GCNGC 5 cut(s) 117, 297, 480, 516, 897
Sau3AI GATC 1 cut(s) 862
Sau96I GGNCC 1 cut(s) 808
SchI GAGTC 1 cut(s) 317
ScrFI CCNGG 2 cut(s) 338, 631
SduI GDGCHC 2 cut(s) 180, 703
SfaNI GCATC 3 cut(s) 308, 556, 964
SmiMI CAYNNNNRTG 2 cut(s) 291, 696
SmlI CTYRAG 2 cut(s) 326, 539
SmoI CTYRAG 2 cut(s) 326, 539
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 3 cut(s) 43, 374, 966
SsiI CCGC 6 cut(s) 116, 515, 822, 890, 910, 959
SspMI CTAG 4 cut(s) 255, 686, 696, 951
StyD4I CCNGG 2 cut(s) 336, 629
StyI CCWWGG 3 cut(s) 120, 286, 585
TaaI ACNGT 2 cut(s) 201, 996
TaiI ACGT 2 cut(s) 613, 676
TaqI TCGA 2 cut(s) 670, 979
TasI AATT 3 cut(s) 43, 374, 966
TauI GCSGC 2 cut(s) 119, 518
TfiI GAWTC 3 cut(s) 221, 709, 981
Tru1I TTAA 4 cut(s) 86, 327, 593, 647
Tru9I TTAA 4 cut(s) 86, 327, 593, 647
TscAI CASTG 2 cut(s) 180, 939
TseI GCWGC 3 cut(s) 296, 479, 896
TspDTI ATGAA 4 cut(s) 66, 87, 159, 390
TspRI CASTG 2 cut(s) 180, 939
Vha464I CTTAAG 1 cut(s) 326
XapI RAATTY 2 cut(s) 43, 374
XceI RCATGY 1 cut(s) 525
XcmI CCANNNNNNNNNTGG 1 cut(s) 526
XmiI GTMKAC 1 cut(s) 417
XspI CTAG 4 cut(s) 255, 686, 696, 951
Zsp2I ATGCAT 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.