FvH4_6g13250
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0012189
Physical Location & Seq
Reverse (-)
8059175 .. 8062140
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13250.t1

Sequence Viewer

Length: 1308 bp
ATGATACGCACTGCGCTTTCACGAGCAGCGGCCATCGTCGCCGCCCGCACCTCCGCCAAGCTCCGCCCTTCCCTCCTCGCTCGATCTCCGCCGTCCAGACTCCTCCACGATGGGATTAACGCCAACCCAGTTGCTCTTCAGATGATCAACTACGCCGTCTCTCTCGCCAGGTCTCAGAAATCAGATGAATCGTACGGTCAAGCTCAGCTTGTGTTGGAACAGTGCCTTTCATCTCAGCCTAGTGAAGGCCAGGACCTTGCTACTCATAATTCAAGGGCAATGGTCTTAATGGCTATGTCTACTTTGTTATCTGAAAGAGGAAAGCTTGATGAAGCTATAGAGAAGCTGCAAAAAGTTGAAGACTTGAGCAGCTCTTCAGTTGGTGTTAGGATTGCCGCGTTGGAGGCGCTAGTTGGACTGCACTTAGAGTTGAAGCAGGATCATACCTCATCAGTTCTTGCTGATAAATGCTTAGAACTTGCGGAGAAAAATGATGAATCTAGTGATTCCGAGGGATATACTCGAGCCGTAGCAGTAAAAGGACTTGTTGAGCTTGTGCATGGTAATCTTGGAATAAGTAAAGATGTAGCTAAAGGTGAACTTTTCATTCGAGAAGTGGAGAGAAATGTTGAGGAAGTTGAAGAATTTACTGGTAGTACTGCTTTATTCTTTGGAGAGCTCTTGCATGCCAGACAGAGCTATGAGATGGCGAAGAAGGTTTACCAGAAAATTATCCAAAATGATTCCAGGAATGAAGAGTTCAGTGACCCAAGTTCATTAGCAGCTGGTAATATGTCGTCAGACAAAGTTTTGTTAGCGGCCACATGTGCGTTGGGACAACTGGAGGCTCATGCAGGGAACTTCGGTGATGCTGAGGAGATTTTAACAAGAGCTTTGACTAAAACAGAGGAACATTTTGGCTCTCATCATCCCAAAGTAGGTGTTATTTTAACCTGCATAGCTCTCATGTTTCGGCGTAAAGCAGTCCAAGAGCATTCCAGTTCTATATTGATCCAAGAGGGACTTTATAGGAGGGCAATAGATTTGCTGAAAGCTCCAGCATTTGAGGCTGAAGGTGCAGAAGCAAAGGCAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTGGGTATGCAGACGTACTTTGTGTCCAACAGAACCGAAAGGATCAAGGAGAAAAAATGAAGAAGTGGGCTGAGGCTGCATGGGGAAACCGCCGGCTTTCATTGGCAGAAGCACTAGATGTATCTAATACAGATAAATCTTTAAAAGTTCCAATTGTGGATGCTCGAATCAGCAGGGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

436

Amino Acids

47.36

Weight (kDa)

5.95

Isoelectric Point (pI)

41.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 962
AccI GTMKAC 1 cut(s) 299
AccII CGCG 1 cut(s) 398
AclWI GGATC 3 cut(s) 447, 1006, 1173
AcoI YGGCCR 2 cut(s) 30, 819
AcsI RAATTY 1 cut(s) 644
AcuI CTGAAG 3 cut(s) 122, 360, 1092
AfaI GTAC 3 cut(s) 194, 658, 1140
AfiI CCNNNNNNNGG 2 cut(s) 245, 938
AflIII ACRYGT 1 cut(s) 824
AgsI TTSAA 4 cut(s) 273, 359, 433, 641
AjnI CCWGG 3 cut(s) 167, 249, 746
Alw21I GWGCWC 1 cut(s) 681
Alw26I GTCTC 2 cut(s) 163, 177
AlwI GGATC 3 cut(s) 447, 1006, 1173
Ama87I CYCGRG 1 cut(s) 522
AoxI GGCC 4 cut(s) 30, 247, 819, 1110
ApeKI GCWGC 5 cut(s) 26, 346, 369, 782, 1199
ApoI RAATTY 1 cut(s) 644
AspLEI GCGC 2 cut(s) 16, 409
AspS9I GGNCC 2 cut(s) 253, 1111
AsuHPI GGTGA 2 cut(s) 608, 878
AvaI CYCGRG 1 cut(s) 522
AvaII GGWCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 681
BarI GAAGNNNNNNTAC 2 cut(s) 704, 736
BauI CACGAG 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 1 cut(s) 681
BbvCI CCTCAGC 2 cut(s) 873, 1194
BbvI GCAGC 5 cut(s) 38, 333, 381, 794, 1186
BccI CCATC 3 cut(s) 41, 104, 700
BceAI ACGGC 3 cut(s) 76, 140, 512
BciT130I CCWGG 3 cut(s) 169, 251, 748
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 2 cut(s) 163, 177
BfaI CTAG 4 cut(s) 240, 410, 501, 1238
BfmI CTRYAG 2 cut(s) 336, 1304
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 962
BisI GCNGC 9 cut(s) 27, 30, 42, 347, 370, 396, 783, 819, 1200
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 9 cut(s) 28, 31, 43, 348, 371, 397, 784, 820, 1201
BmcAI AGTACT 1 cut(s) 658
Bme1390I CCNGG 3 cut(s) 169, 251, 748
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 522
BmgT120I GGNCC 2 cut(s) 253, 1111
BmrFI CCNGG 3 cut(s) 169, 251, 748
BmrI ACTGGG 1 cut(s) 122
BmsI GCATC 2 cut(s) 859, 1273
BmuI ACTGGG 1 cut(s) 122
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 2 cut(s) 863, 1041
Bpu10I CCTNAGC 2 cut(s) 873, 1194
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 510
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 938
Bse118I RCCGGY 1 cut(s) 1215
Bse1I ACTGG 4 cut(s) 128, 655, 846, 999
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 3 cut(s) 169, 251, 748
BseDI CCNNGG 1 cut(s) 510
BseGI GGATG 2 cut(s) 928, 1288
BseLI CCNNNNNNNGG 2 cut(s) 245, 938
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 5 cut(s) 188, 218, 248, 864, 1185
BseNI ACTGG 4 cut(s) 128, 655, 846, 999
BseRI GAGGAG 3 cut(s) 65, 92, 890
BseXI GCAGC 5 cut(s) 38, 333, 381, 794, 1186
BsgI GTGCAG 2 cut(s) 404, 1098
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 4 cut(s) 32, 249, 821, 1112
BsiHKAI GWGCWC 1 cut(s) 681
BsiHKCI CYCGRG 1 cut(s) 522
BsiSI CCGG 1 cut(s) 1216
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 2 cut(s) 849, 1035
BslI CCNNNNNNNGG 2 cut(s) 245, 938
BsmAI GTCTC 2 cut(s) 163, 177
BsmBI CGTCTC 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 849, 1035
BsmI GAATGC 1 cut(s) 994
BsnI GGCC 4 cut(s) 32, 249, 821, 1112
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 522
Bsp1286I GDGCHC 1 cut(s) 681
Bsp143I GATC 5 cut(s) 83, 144, 439, 1011, 1165
Bsp1720I GCTNAGC 1 cut(s) 204
BspANI GGCC 4 cut(s) 32, 249, 821, 1112
BspCNI CTCAG 5 cut(s) 187, 217, 247, 865, 1186
BspFNI CGCG 1 cut(s) 398
BspMI ACCTGC 1 cut(s) 962
BspPI GGATC 3 cut(s) 447, 1006, 1173
BspQI GCTCTTC 2 cut(s) 141, 379
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 1215
BsrI ACTGG 4 cut(s) 128, 655, 846, 999
BssAI RCCGGY 1 cut(s) 1215
BssECI CCNNGG 1 cut(s) 510
BssMI GATC 5 cut(s) 83, 144, 439, 1011, 1165
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 169, 251, 748
Bst4CI ACNGT 2 cut(s) 197, 222
Bst6I CTCTTC 3 cut(s) 141, 379, 750
BstC8I GCNNGC 3 cut(s) 46, 687, 1217
BstDEI CTNAG 7 cut(s) 174, 204, 234, 424, 472, 873, 1194
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 928, 1288
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 16, 409
BstKTI GATC 5 cut(s) 86, 147, 442, 1014, 1168
BstMAI GTCTC 2 cut(s) 163, 177
BstMBI GATC 5 cut(s) 83, 144, 439, 1011, 1165
BstMWI GCNNNNNNNGC 6 cut(s) 38, 404, 827, 1067, 1076, 1199
BstNI CCWGG 3 cut(s) 169, 251, 748
BstNSI RCATGY 2 cut(s) 689, 828
BstSCI CCNGG 3 cut(s) 167, 249, 746
BstSFI CTRYAG 2 cut(s) 336, 1304
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 38, 333, 381, 794, 1186
BstV2I GAAGAC 1 cut(s) 366
BsuRI GGCC 4 cut(s) 32, 249, 821, 1112
BtsCI GGATG 2 cut(s) 928, 1288
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 3 cut(s) 9, 227, 769
BveI ACCTGC 1 cut(s) 962
Cac8I GCNNGC 3 cut(s) 46, 687, 1217
CfoI GCGC 2 cut(s) 16, 409
Cfr10I RCCGGY 1 cut(s) 1215
Cfr13I GGNCC 2 cut(s) 253, 1111
Csp6I GTAC 3 cut(s) 193, 657, 1139
CviAII CATG 6 cut(s) 560, 686, 825, 851, 967, 1203
CviQI GTAC 3 cut(s) 193, 657, 1139
DdeI CTNAG 7 cut(s) 174, 204, 234, 424, 472, 873, 1194
DpnI GATC 5 cut(s) 85, 146, 441, 1013, 1167
DpnII GATC 5 cut(s) 83, 144, 439, 1011, 1165
DraI TTTAAA 1 cut(s) 1266
EaeI YGGCCR 2 cut(s) 30, 819
Eam1104I CTCTTC 3 cut(s) 141, 379, 750
EarI CTCTTC 3 cut(s) 141, 379, 750
EciI GGCGGA 3 cut(s) 43, 53, 78
Ecl136II GAGCTC 1 cut(s) 679
Eco24I GRGCYC 1 cut(s) 681
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 679
Eco57I CTGAAG 3 cut(s) 122, 360, 1092
Eco88I CYCGRG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 679
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 1 cut(s) 253
EcoRII CCWGG 3 cut(s) 167, 249, 746
EcoT38I GRGCYC 1 cut(s) 681
Esp3I CGTCTC 1 cut(s) 163
FaeI CATG 6 cut(s) 563, 689, 828, 854, 970, 1206
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 585, 617, 1008, 1040
FaqI GGGAC 2 cut(s) 849, 1035
FatI CATG 6 cut(s) 559, 685, 824, 850, 966, 1202
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 1 cut(s) 299
Fnu4HI GCNGC 9 cut(s) 27, 30, 42, 347, 370, 396, 783, 819, 1200
FokI GGATG 2 cut(s) 915, 1295
FriOI GRGCYC 1 cut(s) 681
Fsp4HI GCNGC 9 cut(s) 27, 30, 42, 347, 370, 396, 783, 819, 1200
FspBI CTAG 4 cut(s) 240, 410, 501, 1238
GlaI GCGC 2 cut(s) 15, 408
GluI GCNGC 9 cut(s) 27, 30, 42, 347, 370, 396, 783, 819, 1200
GsuI CTGGAG 2 cut(s) 863, 1041
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 4 cut(s) 32, 249, 821, 1112
HapII CCGG 1 cut(s) 1216
HhaI GCGC 2 cut(s) 16, 409
Hin1II CATG 6 cut(s) 563, 689, 828, 854, 970, 1206
Hin6I GCGC 2 cut(s) 14, 407
HinP1I GCGC 2 cut(s) 14, 407
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 6 cut(s) 99, 188, 497, 506, 743, 1290
HpaII CCGG 1 cut(s) 1216
HphI GGTGA 2 cut(s) 608, 878
Hpy166II GTNNAC 3 cut(s) 300, 599, 721
Hpy188I TCNGA 6 cut(s) 141, 177, 184, 313, 511, 802
Hpy188III TCNNGA 3 cut(s) 21, 96, 611
Hpy8I GTNNAC 3 cut(s) 300, 599, 721
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 4 cut(s) 78, 239, 709, 1067
HpyCH4III ACNGT 2 cut(s) 197, 222
HpyCH4IV ACGT 1 cut(s) 1137
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 404, 827, 1067, 1076, 1199
HpyF3I CTNAG 7 cut(s) 174, 204, 234, 424, 472, 873, 1194
HpySE526I ACGT 1 cut(s) 1137
Hsp92II CATG 6 cut(s) 563, 689, 828, 854, 970, 1206
HspAI GCGC 2 cut(s) 14, 407
KroI GCCGGC 1 cut(s) 1215
KroNI GCCGGC 1 cut(s) 1217
Ksp22I TGATCA 1 cut(s) 144
Kzo9I GATC 5 cut(s) 83, 144, 439, 1011, 1165
LguI GCTCTTC 2 cut(s) 141, 379
LmnI GCTCC 2 cut(s) 66, 1060
Lsp1109I GCAGC 5 cut(s) 38, 333, 381, 794, 1186
LweI GCATC 2 cut(s) 859, 1273
MaeI CTAG 4 cut(s) 240, 410, 501, 1238
MaeII ACGT 1 cut(s) 1137
MaeIII GTNAC 1 cut(s) 764
MalI GATC 5 cut(s) 85, 146, 441, 1013, 1167
MboI GATC 5 cut(s) 83, 144, 439, 1011, 1165
MboII GAAGA 7 cut(s) 128, 366, 371, 653, 724, 767, 1195
MfeI CAATTG 1 cut(s) 1275
MhlI GDGCHC 1 cut(s) 681
MluCI AATT 4 cut(s) 268, 644, 729, 1275
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 4 cut(s) 195, 381, 394, 1174
MroNI GCCGGC 1 cut(s) 1215
MseI TTAA 5 cut(s) 117, 287, 884, 950, 1265
MspA1I CMGCKG 2 cut(s) 29, 785
MspI CCGG 1 cut(s) 1216
MspR9I CCNGG 3 cut(s) 169, 251, 748
MunI CAATTG 1 cut(s) 1275
Mva1269I GAATGC 1 cut(s) 994
MvaI CCWGG 3 cut(s) 169, 251, 748
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 6 cut(s) 38, 404, 827, 1067, 1076, 1199
NaeI GCCGGC 1 cut(s) 1217
NdeII GATC 5 cut(s) 83, 144, 439, 1011, 1165
NgoMIV GCCGGC 1 cut(s) 1215
NlaIII CATG 6 cut(s) 563, 689, 828, 854, 970, 1206
NmuCI GTSAC 1 cut(s) 764
NspI RCATGY 2 cut(s) 689, 828
PaeI GCATGC 1 cut(s) 689
PaeR7I CTCGAG 1 cut(s) 522
PciI ACATGT 1 cut(s) 824
PciSI GCTCTTC 2 cut(s) 141, 379
PctI GAATGC 1 cut(s) 994
PdiI GCCGGC 1 cut(s) 1217
PfeI GAWTC 5 cut(s) 188, 497, 506, 743, 1290
Pfl23II CGTACG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 746
PkrI GCNGC 9 cut(s) 28, 31, 43, 348, 371, 397, 784, 820, 1201
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 681
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 3 cut(s) 167, 249, 746
PspGI CCWGG 3 cut(s) 167, 249, 746
PspLI CGTACG 1 cut(s) 192
PspPI GGNCC 2 cut(s) 253, 1111
PspPPI RGGWCCY 1 cut(s) 253
PspXI VCTCGAGB 1 cut(s) 522
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 3 cut(s) 194, 658, 1140
RsaNI GTAC 3 cut(s) 193, 657, 1139
SacI GAGCTC 1 cut(s) 681
SapI GCTCTTC 2 cut(s) 141, 379
SaqAI TTAA 5 cut(s) 117, 287, 884, 950, 1265
SatI GCNGC 9 cut(s) 27, 30, 42, 347, 370, 396, 783, 819, 1200
Sau3AI GATC 5 cut(s) 83, 144, 439, 1011, 1165
Sau96I GGNCC 2 cut(s) 253, 1111
ScaI AGTACT 1 cut(s) 658
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 3 cut(s) 169, 251, 748
SduI GDGCHC 1 cut(s) 681
SfaNI GCATC 2 cut(s) 859, 1273
SfcI CTRYAG 2 cut(s) 336, 1304
Sfr274I CTCGAG 1 cut(s) 522
SinI GGWCC 1 cut(s) 253
SlaI CTCGAG 1 cut(s) 522
SmlI CTYRAG 2 cut(s) 364, 522
SmoI CTYRAG 2 cut(s) 364, 522
SphI GCATGC 1 cut(s) 689
Sse9I AATT 4 cut(s) 268, 644, 729, 1275
SspMI CTAG 4 cut(s) 240, 410, 501, 1238
SstI GAGCTC 1 cut(s) 681
StyD4I CCNGG 3 cut(s) 167, 249, 746
TaaI ACNGT 2 cut(s) 197, 222
TaiI ACGT 1 cut(s) 1140
TaqI TCGA 4 cut(s) 82, 523, 610, 1288
TasI AATT 4 cut(s) 268, 644, 729, 1275
TatI WGTACW 1 cut(s) 656
TauI GCSGC 4 cut(s) 32, 44, 398, 821
TfiI GAWTC 5 cut(s) 188, 497, 506, 743, 1290
Tru1I TTAA 5 cut(s) 117, 287, 884, 950, 1265
Tru9I TTAA 5 cut(s) 117, 287, 884, 950, 1265
TscAI CASTG 3 cut(s) 16, 227, 769
TseFI GTSAC 1 cut(s) 764
TseI GCWGC 5 cut(s) 26, 346, 369, 782, 1199
Tsp45I GTSAC 1 cut(s) 764
TspDTI ATGAA 9 cut(s) 201, 219, 345, 510, 595, 765, 768, 1196, 1212
TspRI CASTG 3 cut(s) 16, 227, 769
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 644
XceI RCATGY 2 cut(s) 689, 828
XcmI CCANNNNNNNNNTGG 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 522
XmiI GTMKAC 1 cut(s) 299
XspI CTAG 4 cut(s) 240, 410, 501, 1238
ZrmI AGTACT 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.