Rroxscaffold_6G00414810
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0012189
Physical Location & Seq
Forward (+)
37088122 .. 37090973
2852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00414810.1

Sequence Viewer

Length: 1197 bp
ATGATACGCACTGCGCTATCACGAGCAGCGGCCACCGTCGCCGCCCGCACCTCCGCCAAGCTCCGCCCTTCCCTCCTGGCACGATCTCCGCCGTCCAGACATCTCCACGATGGGATTAACGCCAACCCTGTTGCTCTTCAGATGATCAGCTACGCCCTCTCTCTTGCCAGGTCTCACAAATCAGATGAGTCGTACGGACAAGCTCAGCTTGTGCTGGAACAGTGCCTTTCGTCTCAGCCTAGTGAAGGCCAGGACCTGAATAGTCATAATTCTCGGGCAATGGTGTTAATGGCCATGTCTACTTTGTTATCTGAAAGAGGAAGGCTTGATGAAGCAATAGAAAAACTGCAAAAAGTTGAAGACTTGAGCAGCTCTTCAGCTGGTGTTAGGATTGCCGCGTTGGAGGCGCTTGTTGGACTGCACTTAGAGTTAAAGCAGGATCATACCTCATCAGTGCTCGCTGATAAATGCTTAGAACTTTCGGAGAAACATGATGAACTTGGATCTGGTGGTTCTGAGGGATATACTCGTGCAGTAGCAGTAAAAGGACTTGTTGAGCTTGTGCATGGTAATCTTGGATTATGTAAAGATGTAGCTAAAGGTGAACTTTTCATTCGAGAAGTTGAGAGAAATGTTGAGGAAGTTGAAGAATTCACTGGTAGTACTGCTTTATTCTTTGGAGAGCTCTTGCATGCCAGACAGAGCTTTGAGATGGCGAAGAAGGTATACCGGAAAATTATCCAAAATGATTCCAGGAATGAAGAGTTCAGTGATCCAAGCGCATTAGCAGCTGGTAATATGTCGTCAGACAAAGTTTTGTTAGCGGCCACATGTGCGTTGGGACAGCTTGAGGCTCATTCAGGGAACTTCGGTGATGCTGAGGAGATGTTAACGAGAGCTTTAACTAAAACAGAGGAACATTTTGGCTCTCATCATCCCAAAGTGGGTGTTGTTTTAACCTGCATAGCTCTCATGTTTCAGCGTAAAGCAGTCCAAGAGCATTCCAGTGCAGAAGCAAAGGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGACCGCAGTGGCAGCTCAAGGTTCCTTCGTGTTATGCAGTGGAGCGAGAACAGTTGTTCTAATCCCATCAGGCCCTTTGCAGTGCCTAATGATACAGCAGATATGAGAAGACTAGCAGCATACCCCTCTATGAAGTATCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

398

Amino Acids

43.41

Weight (kDa)

6.29

Isoelectric Point (pI)

43.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 277 - 344 1.5e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccI GTMKAC 2 cut(s) 299, 726
AccII CGCG 1 cut(s) 398
AciI CCGC 9 cut(s) 29, 42, 46, 54, 64, 89, 396, 824, 1057
AclWI GGATC 3 cut(s) 447, 511, 767
AcoI YGGCCR 3 cut(s) 30, 291, 825
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 2 cut(s) 122, 360
AfaI GTAC 2 cut(s) 194, 664
AfiI CCNNNNNNNGG 2 cut(s) 245, 944
AflIII ACRYGT 1 cut(s) 830
AgsI TTSAA 2 cut(s) 359, 647
AjnI CCWGG 4 cut(s) 75, 167, 249, 752
Alw21I GWGCWC 2 cut(s) 459, 687
Alw26I GTCTC 3 cut(s) 177, 237, 1047
AlwI GGATC 3 cut(s) 447, 511, 767
AlwNI CAGNNNCTG 1 cut(s) 256
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 6 cut(s) 30, 247, 291, 825, 1041, 1124
ApeKI GCWGC 5 cut(s) 26, 369, 788, 1065, 1169
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 3 cut(s) 16, 409, 782
AspS9I GGNCC 3 cut(s) 253, 1042, 1125
AsuHPI GGTGA 2 cut(s) 614, 884
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BauI CACGAG 2 cut(s) 21, 528
BbsI GAAGAC 2 cut(s) 366, 1168
Bbv12I GWGCWC 2 cut(s) 459, 687
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 5 cut(s) 38, 381, 800, 1077, 1181
BccI CCATC 3 cut(s) 104, 706, 1127
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 4 cut(s) 77, 169, 251, 754
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 177, 237, 1047
BfaI CTAG 2 cut(s) 240, 1166
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 968
BisI GCNGC 9 cut(s) 27, 30, 42, 370, 396, 789, 825, 1066, 1170
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 9 cut(s) 28, 31, 43, 371, 397, 790, 826, 1067, 1171
BmcAI AGTACT 1 cut(s) 664
Bme1390I CCNGG 4 cut(s) 77, 169, 251, 754
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 253, 1042, 1125
BmiI GGNNCC 1 cut(s) 1076
BmrFI CCNGG 4 cut(s) 77, 169, 251, 754
BmsI GCATC 1 cut(s) 865
BpiI GAAGAC 2 cut(s) 366, 1168
Bpu10I CCTNAGC 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 3 cut(s) 385, 869, 1054
BsaI GGTCTC 2 cut(s) 177, 1047
BsaWI WCCGGW 1 cut(s) 729
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 944
Bse1I ACTGG 2 cut(s) 661, 1005
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 4 cut(s) 77, 169, 251, 754
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 2 cut(s) 245, 944
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 4 cut(s) 218, 248, 507, 870
BseNI ACTGG 2 cut(s) 661, 1005
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 5 cut(s) 38, 381, 800, 1077, 1181
BsgI GTGCAG 3 cut(s) 404, 552, 1029
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 6 cut(s) 32, 249, 293, 827, 1043, 1126
BsiHKAI GWGCWC 2 cut(s) 459, 687
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 1 cut(s) 730
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 855
BslI CCNNNNNNNGG 2 cut(s) 245, 944
BsmAI GTCTC 3 cut(s) 177, 237, 1047
BsmBI CGTCTC 1 cut(s) 237
BsmFI GGGAC 1 cut(s) 855
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 6 cut(s) 32, 249, 293, 827, 1043, 1126
Bso31I GGTCTC 2 cut(s) 177, 1047
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 459, 687
Bsp143I GATC 5 cut(s) 83, 144, 439, 503, 772
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 9 cut(s) 29, 42, 46, 54, 64, 89, 396, 824, 1057
BspANI GGCC 6 cut(s) 32, 249, 293, 827, 1043, 1126
BspCNI CTCAG 4 cut(s) 217, 247, 508, 871
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 1076
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 3 cut(s) 447, 511, 767
BspQI GCTCTTC 2 cut(s) 141, 379
BspTNI GGTCTC 2 cut(s) 177, 1047
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 2 cut(s) 661, 1005
BssMI GATC 5 cut(s) 83, 144, 439, 503, 772
BssNAI GTATAC 1 cut(s) 727
BssSI CACGAG 2 cut(s) 21, 528
Bst1107I GTATAC 1 cut(s) 727
Bst2BI CACGAG 2 cut(s) 21, 528
Bst2UI CCWGG 4 cut(s) 77, 169, 251, 754
Bst4CI ACNGT 3 cut(s) 37, 222, 1106
Bst6I CTCTTC 3 cut(s) 141, 379, 756
BstC8I GCNNGC 3 cut(s) 46, 459, 693
BstDEI CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 934
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 3 cut(s) 16, 409, 782
BstKTI GATC 5 cut(s) 86, 147, 442, 506, 775
BstMAI GTCTC 3 cut(s) 177, 237, 1047
BstMBI GATC 5 cut(s) 83, 144, 439, 503, 772
BstMWI GCNNNNNNNGC 5 cut(s) 38, 404, 788, 833, 1065
BstNI CCWGG 4 cut(s) 77, 169, 251, 754
BstNSI RCATGY 2 cut(s) 695, 834
BstSCI CCNGG 4 cut(s) 75, 167, 249, 752
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 38, 381, 800, 1077, 1181
BstV2I GAAGAC 2 cut(s) 366, 1168
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZ17I GTATAC 1 cut(s) 727
BsuRI GGCC 6 cut(s) 32, 249, 293, 827, 1043, 1126
BtsCI GGATG 1 cut(s) 934
BtsI GCAGTG 4 cut(s) 9, 1066, 1097, 1140
BtsIMutI CAGTG 9 cut(s) 9, 227, 459, 654, 775, 1012, 1066, 1097, 1140
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 3 cut(s) 46, 459, 693
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 3 cut(s) 16, 409, 782
Cfr13I GGNCC 3 cut(s) 253, 1042, 1125
Csp6I GTAC 2 cut(s) 193, 663
CviAII CATG 6 cut(s) 295, 491, 566, 692, 831, 973
CviQI GTAC 2 cut(s) 193, 663
DdeI CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
DpnI GATC 5 cut(s) 85, 146, 441, 505, 774
DpnII GATC 5 cut(s) 83, 144, 439, 503, 772
EaeI YGGCCR 3 cut(s) 30, 291, 825
Eam1104I CTCTTC 3 cut(s) 141, 379, 756
EarI CTCTTC 3 cut(s) 141, 379, 756
EciI GGCGGA 3 cut(s) 43, 53, 78
Ecl136II GAGCTC 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 2 cut(s) 177, 1047
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 2 cut(s) 122, 360
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 685
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoO109I RGGNCCY 2 cut(s) 253, 1125
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 4 cut(s) 75, 167, 249, 752
EcoT38I GRGCYC 1 cut(s) 687
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 6 cut(s) 298, 494, 569, 695, 834, 976
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 591, 623
FaqI GGGAC 1 cut(s) 855
FatI CATG 6 cut(s) 294, 490, 565, 691, 830, 972
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 2 cut(s) 299, 726
Fnu4HI GCNGC 9 cut(s) 27, 30, 42, 370, 396, 789, 825, 1066, 1170
FokI GGATG 1 cut(s) 921
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 9 cut(s) 27, 30, 42, 370, 396, 789, 825, 1066, 1170
FspBI CTAG 2 cut(s) 240, 1166
GlaI GCGC 3 cut(s) 15, 408, 781
GluI GCNGC 9 cut(s) 27, 30, 42, 370, 396, 789, 825, 1066, 1170
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 6 cut(s) 32, 249, 293, 827, 1043, 1126
HapII CCGG 1 cut(s) 730
HhaI GCGC 3 cut(s) 16, 409, 782
Hin1II CATG 6 cut(s) 298, 494, 569, 695, 834, 976
Hin6I GCGC 3 cut(s) 14, 407, 780
HinP1I GCGC 3 cut(s) 14, 407, 780
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HinfI GANTC 2 cut(s) 188, 749
HpaI GTTAAC 1 cut(s) 891
HpaII CCGG 1 cut(s) 730
HphI GGTGA 2 cut(s) 614, 884
Hpy166II GTNNAC 4 cut(s) 300, 605, 727, 891
Hpy188I TCNGA 6 cut(s) 141, 184, 313, 484, 517, 808
Hpy188III TCNNGA 3 cut(s) 21, 96, 617
Hpy8I GTNNAC 4 cut(s) 300, 605, 727, 891
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 5 cut(s) 78, 239, 315, 715, 1088
HpyCH4III ACNGT 3 cut(s) 37, 222, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 38, 404, 788, 833, 1065
HpyF3I CTNAG 6 cut(s) 204, 234, 424, 472, 516, 879
Hsp92II CATG 6 cut(s) 298, 494, 569, 695, 834, 976
HspAI GCGC 3 cut(s) 14, 407, 780
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 5 cut(s) 83, 144, 439, 503, 772
LguI GCTCTTC 2 cut(s) 141, 379
LmnI GCTCC 2 cut(s) 66, 1095
Lsp1109I GCAGC 5 cut(s) 38, 381, 800, 1077, 1181
LweI GCATC 1 cut(s) 865
MaeI CTAG 2 cut(s) 240, 1166
MalI GATC 5 cut(s) 85, 146, 441, 505, 774
MboI GATC 5 cut(s) 83, 144, 439, 503, 772
MboII GAAGA 7 cut(s) 128, 366, 371, 659, 730, 773, 1173
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 459, 687
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 3 cut(s) 268, 650, 735
MluNI TGGCCA 1 cut(s) 293
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 381, 394
Mox20I TGGCCA 1 cut(s) 293
MscI TGGCCA 1 cut(s) 293
MseI TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1195
MslI CAYNNNNRTG 1 cut(s) 1005
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 3 cut(s) 29, 380, 791
MspI CCGG 1 cut(s) 730
MspR9I CCNGG 4 cut(s) 77, 169, 251, 754
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 4 cut(s) 77, 169, 251, 754
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 38, 404, 788, 833, 1065
NdeII GATC 5 cut(s) 83, 144, 439, 503, 772
NlaIII CATG 6 cut(s) 298, 494, 569, 695, 834, 976
NlaIV GGNNCC 1 cut(s) 1076
NspI RCATGY 2 cut(s) 695, 834
PaeI GCATGC 1 cut(s) 695
PciI ACATGT 1 cut(s) 830
PciSI GCTCTTC 2 cut(s) 141, 379
PctI GAATGC 1 cut(s) 1000
PfeI GAWTC 1 cut(s) 749
Pfl23II CGTACG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 9 cut(s) 28, 31, 43, 371, 397, 790, 826, 1067, 1171
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 253
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 253
Psp6I CCWGG 4 cut(s) 75, 167, 249, 752
PspGI CCWGG 4 cut(s) 75, 167, 249, 752
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 1076
PspPI GGNCC 3 cut(s) 253, 1042, 1125
PspPPI RGGWCCY 1 cut(s) 253
PstNI CAGNNNCTG 1 cut(s) 256
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 2 cut(s) 380, 791
RsaI GTAC 2 cut(s) 194, 664
RsaNI GTAC 2 cut(s) 193, 663
RseI CAYNNNNRTG 1 cut(s) 1005
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 2 cut(s) 141, 379
SaqAI TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1195
SatI GCNGC 9 cut(s) 27, 30, 42, 370, 396, 789, 825, 1066, 1170
Sau3AI GATC 5 cut(s) 83, 144, 439, 503, 772
Sau96I GGNCC 3 cut(s) 253, 1042, 1125
ScaI AGTACT 1 cut(s) 664
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 4 cut(s) 77, 169, 251, 754
SduI GDGCHC 2 cut(s) 459, 687
SfaNI GCATC 1 cut(s) 865
SinI GGWCC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 1005
SmlI CTYRAG 3 cut(s) 364, 848, 1069
SmoI CTYRAG 3 cut(s) 364, 848, 1069
SphI GCATGC 1 cut(s) 695
Sse9I AATT 3 cut(s) 268, 650, 735
SsiI CCGC 9 cut(s) 29, 42, 46, 54, 64, 89, 396, 824, 1057
SspMI CTAG 2 cut(s) 240, 1166
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 4 cut(s) 75, 167, 249, 752
TaaI ACNGT 3 cut(s) 37, 222, 1106
TaqI TCGA 1 cut(s) 616
TasI AATT 3 cut(s) 268, 650, 735
TatI WGTACW 1 cut(s) 662
TauI GCSGC 4 cut(s) 32, 44, 398, 827
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1195
Tru9I TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1195
TscAI CASTG 9 cut(s) 16, 227, 459, 661, 775, 1012, 1066, 1097, 1140
TseI GCWGC 5 cut(s) 26, 369, 788, 1065, 1169
TspDTI ATGAA 4 cut(s) 345, 510, 601, 774
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 9 cut(s) 16, 227, 459, 661, 775, 1012, 1066, 1097, 1140
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 650
XceI RCATGY 2 cut(s) 695, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmiI GTMKAC 2 cut(s) 299, 726
XspI CTAG 2 cut(s) 240, 1166
ZrmI AGTACT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.