RLG00000024604
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0012189
Physical Location & Seq
Forward (+)
37425463 .. 37428871
3409 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024604

Sequence Viewer

Length: 1314 bp
ATGATACGCACTGCGCTATCACGAGCAGCAGCCACCGTCGCCGCCCGCACCTCCGCCAAGCTCCGCCCTTCCCTTCTGGCACGATCTCCGCCGTCCAGACATATCCACGATGGGATTAACGCCAACCCTGTTGCTCTTCAGATGATCAACTACGCCCTCTCTCTTGCCAGGTCTCACAAATCAGATGAATCGTACGGACAAGCTCAGCTTGTGCTGGAACAGTGCCTTTCGTCCCAGCCTAGTGAAGGGCCGGACCCGAATAGTCATAATTCTCGGGCAATGGTGTTAATGGCCATGTCTACTTTGTTATATGAAAGAGGAAGGCTTGATGAAGCAATAGAAAAACTGCAAAAAGTTGAAGACTTGAGCAGCTCTTCAGTTGGTGTTAGGATTGCCGCGTTGGAGGCGCTTGTTGGACTGCACTTAGAGTTAAAGCAGGATCATACCTCATCAGTGCTCGCTGATAAATGCTTAGAACTGTCGGAGAAACATGATGAACTTGGATCTGGTGGTTCTGAGGGATATACTCGTGCAGTAGCAGTAAAAGGACTTGTTGAGCTTGTGCATGGTAATCTTGGATTATGTAAAGATGTAGCTAAAGGAGAACTTTTCATTCGAGAAGTTGAGAGAAATGTTGAGGAAGTTGATGAATTCACTGGTAGTACTGCTTTATTCTTTGGAGAGCTCTTGCATGCCAGACAGAGCTTTGAGATGGCGAAGAAGGTATACCAGAAAATTATCCAAAATGATTCCAGGAATGAAGAGTTCAGTGATCCAAATGCATTAGCAGCTGGTAATATGTCGTCAGACAAAGTTTTGTTAGCGGCCACATGTGCGTTGGGACAGCTTGAGGCTCATTCAGGGAACTTCGGTGATGCTGAGGAGATGTTAACGAGAGCCTTAACTAAAACAGAGGAACATTTTGGCTCTCATCATCCCAAAGTGGGCGTTGTTTTAACCTGCATAGCTCTCATGTTTCAGCGTAAAGCAGTCCAAGAGCATTCCAGTTCTATATTGATCCAAGAGGGACTTTATAGAAGGGCAATAGAATTGCTGAAAGCTCCAGCATTGGAGGCTGAAGGTGCAGAAGCAAAGGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTGGGTATGCAGAAGTACTTTGCATCCAACAAAACCGAAAGCATCAAGGAGAAAAAATGAAGAGGTGGGCAGAGGCTGCATGGGGAAACCGCCGGCTCTCATTGGCAGAAGCACTAGATGTATCTAATACAGATACATCTTTAAAAGTTCCAATTATAGATGCTCGAATCAGCAGGGTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

438

Amino Acids

47.66

Weight (kDa)

6.13

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_NPHP3 PF24885 277 - 333 7.2e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 968
AccI GTMKAC 2 cut(s) 299, 726
AccII CGCG 1 cut(s) 398
AciI CCGC 8 cut(s) 42, 46, 54, 64, 89, 396, 824, 1219
AclWI GGATC 4 cut(s) 447, 511, 767, 1012
AcoI YGGCCR 2 cut(s) 291, 825
AcsI RAATTY 1 cut(s) 650
AcuI CTGAAG 3 cut(s) 122, 360, 1098
AfaI GTAC 3 cut(s) 194, 664, 1146
AfiI CCNNNNNNNGG 2 cut(s) 245, 944
AflIII ACRYGT 1 cut(s) 830
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 2 cut(s) 167, 752
Alw21I GWGCWC 2 cut(s) 459, 687
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 4 cut(s) 447, 511, 767, 1012
AlwNI CAGNNNCTG 1 cut(s) 1205
Ama87I CYCGRG 1 cut(s) 273
AoxI GGCC 4 cut(s) 248, 291, 825, 1116
ApeKI GCWGC 5 cut(s) 26, 29, 369, 788, 1205
ApoI RAATTY 1 cut(s) 650
AspLEI GCGC 2 cut(s) 16, 409
AspS9I GGNCC 3 cut(s) 248, 253, 1117
AsuHPI GGTGA 1 cut(s) 884
AvaI CYCGRG 1 cut(s) 273
AvaII GGWCC 1 cut(s) 253
BalI TGGCCA 1 cut(s) 293
BanII GRGCYC 1 cut(s) 687
BarI GAAGNNNNNNTAC 2 cut(s) 710, 742
BauI CACGAG 2 cut(s) 21, 528
BbsI GAAGAC 1 cut(s) 366
Bbv12I GWGCWC 2 cut(s) 459, 687
BbvCI CCTCAGC 1 cut(s) 879
BbvI GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BccI CCATC 2 cut(s) 104, 706
BceAI ACGGC 1 cut(s) 76
BciT130I CCWGG 2 cut(s) 169, 754
BclI TGATCA 1 cut(s) 144
BcoDI GTCTC 1 cut(s) 177
BfaI CTAG 2 cut(s) 240, 1244
BfmI CTRYAG 1 cut(s) 1310
BfoI RGCGCY 1 cut(s) 410
BfuAI ACCTGC 1 cut(s) 968
BisI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
BlpI GCTNAGC 1 cut(s) 204
BlsI GCNGC 8 cut(s) 28, 31, 43, 371, 397, 790, 826, 1207
BmcAI AGTACT 2 cut(s) 664, 1146
Bme1390I CCNGG 2 cut(s) 169, 754
Bme18I GGWCC 1 cut(s) 253
BmeT110I CYCGRG 1 cut(s) 273
BmgT120I GGNCC 3 cut(s) 248, 253, 1117
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 2 cut(s) 169, 754
BmsI GCATC 4 cut(s) 865, 1161, 1180, 1279
BpiI GAAGAC 1 cut(s) 366
BpmI CTGGAG 1 cut(s) 1047
Bpu10I CCTNAGC 1 cut(s) 879
Bpu1102I GCTNAGC 1 cut(s) 204
BpuEI CTTGAG 2 cut(s) 385, 869
BsaI GGTCTC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 2 cut(s) 245, 944
Bse118I RCCGGY 1 cut(s) 1221
Bse1I ACTGG 2 cut(s) 661, 1005
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 2 cut(s) 169, 754
BseGI GGATG 2 cut(s) 934, 1152
BseLI CCNNNNNNNGG 2 cut(s) 245, 944
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 3 cut(s) 218, 507, 870
BseNI ACTGG 2 cut(s) 661, 1005
BseRI GAGGAG 1 cut(s) 896
BseXI GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BseYI CCCAGC 1 cut(s) 234
BsgI GTGCAG 3 cut(s) 404, 552, 1104
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 4 cut(s) 250, 293, 827, 1118
BsiHKAI GWGCWC 2 cut(s) 459, 687
BsiHKCI CYCGRG 1 cut(s) 273
BsiSI CCGG 2 cut(s) 251, 1222
BsiWI CGTACG 1 cut(s) 192
BslFI GGGAC 3 cut(s) 217, 855, 1041
BslI CCNNNNNNNGG 2 cut(s) 245, 944
BsmAI GTCTC 1 cut(s) 177
BsmFI GGGAC 3 cut(s) 217, 855, 1041
BsmI GAATGC 1 cut(s) 1000
BsnI GGCC 4 cut(s) 250, 293, 827, 1118
Bso31I GGTCTC 1 cut(s) 177
BsoBI CYCGRG 1 cut(s) 273
Bsp1286I GDGCHC 2 cut(s) 459, 687
Bsp143I GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
Bsp1720I GCTNAGC 1 cut(s) 204
BspACI CCGC 8 cut(s) 42, 46, 54, 64, 89, 396, 824, 1219
BspANI GGCC 4 cut(s) 250, 293, 827, 1118
BspCNI CTCAG 3 cut(s) 217, 508, 871
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 255
BspMI ACCTGC 1 cut(s) 968
BspPI GGATC 4 cut(s) 447, 511, 767, 1012
BspQI GCTCTTC 2 cut(s) 141, 379
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 1221
BsrI ACTGG 2 cut(s) 661, 1005
BssAI RCCGGY 1 cut(s) 1221
BssMI GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
BssNAI GTATAC 1 cut(s) 727
BssSI CACGAG 2 cut(s) 21, 528
Bst1107I GTATAC 1 cut(s) 727
Bst2BI CACGAG 2 cut(s) 21, 528
Bst2UI CCWGG 2 cut(s) 169, 754
Bst4CI ACNGT 3 cut(s) 37, 222, 480
Bst6I CTCTTC 4 cut(s) 141, 379, 756, 1184
BstAPI GCANNNNNTGC 1 cut(s) 1205
BstC8I GCNNGC 4 cut(s) 46, 459, 693, 1223
BstDEI CTNAG 5 cut(s) 204, 424, 472, 516, 879
BstENI CCTNNNNNAGG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 934, 1152
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 410
BstHHI GCGC 2 cut(s) 16, 409
BstKTI GATC 6 cut(s) 86, 147, 442, 506, 775, 1020
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
BstMWI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
BstNI CCWGG 2 cut(s) 169, 754
BstNSI RCATGY 2 cut(s) 695, 834
BstSCI CCNGG 2 cut(s) 167, 752
BstSFI CTRYAG 1 cut(s) 1310
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 5 cut(s) 38, 41, 381, 800, 1192
BstV2I GAAGAC 1 cut(s) 366
BstX2I RGATCY 1 cut(s) 503
BstYI RGATCY 1 cut(s) 503
BstZ17I GTATAC 1 cut(s) 727
BsuRI GGCC 4 cut(s) 250, 293, 827, 1118
BtsCI GGATG 2 cut(s) 934, 1152
BtsI GCAGTG 1 cut(s) 9
BtsIMutI CAGTG 5 cut(s) 9, 227, 459, 654, 775
BveI ACCTGC 1 cut(s) 968
Cac8I GCNNGC 4 cut(s) 46, 459, 693, 1223
CaiI CAGNNNCTG 1 cut(s) 1205
CfoI GCGC 2 cut(s) 16, 409
Cfr10I RCCGGY 1 cut(s) 1221
Cfr13I GGNCC 3 cut(s) 248, 253, 1117
Csp6I GTAC 3 cut(s) 193, 663, 1145
CviAII CATG 7 cut(s) 295, 491, 566, 692, 831, 973, 1209
CviQI GTAC 3 cut(s) 193, 663, 1145
DdeI CTNAG 5 cut(s) 204, 424, 472, 516, 879
DpnI GATC 6 cut(s) 85, 146, 441, 505, 774, 1019
DpnII GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
DraI TTTAAA 1 cut(s) 1272
EaeI YGGCCR 2 cut(s) 291, 825
Eam1104I CTCTTC 4 cut(s) 141, 379, 756, 1184
EarI CTCTTC 4 cut(s) 141, 379, 756, 1184
EciI GGCGGA 3 cut(s) 43, 53, 78
Ecl136II GAGCTC 1 cut(s) 685
Eco24I GRGCYC 1 cut(s) 687
Eco31I GGTCTC 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 253
Eco53kI GAGCTC 1 cut(s) 685
Eco57I CTGAAG 3 cut(s) 122, 360, 1098
Eco88I CYCGRG 1 cut(s) 273
EcoICRI GAGCTC 1 cut(s) 685
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 2 cut(s) 167, 752
EcoT22I ATGCAT 1 cut(s) 784
EcoT38I GRGCYC 1 cut(s) 687
FaeI CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 591, 623, 1014, 1046
FaqI GGGAC 3 cut(s) 217, 855, 1041
FatI CATG 7 cut(s) 294, 490, 565, 691, 830, 972, 1208
FauI CCCGC 1 cut(s) 53
FbaI TGATCA 1 cut(s) 144
FblI GTMKAC 2 cut(s) 299, 726
Fnu4HI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
FokI GGATG 2 cut(s) 921, 1139
FriOI GRGCYC 1 cut(s) 687
Fsp4HI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
FspBI CTAG 2 cut(s) 240, 1244
GlaI GCGC 2 cut(s) 15, 408
GluI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
GsaI CCCAGC 1 cut(s) 238
GsuI CTGGAG 1 cut(s) 1047
HaeII RGCGCY 1 cut(s) 410
HaeIII GGCC 4 cut(s) 250, 293, 827, 1118
HapII CCGG 2 cut(s) 251, 1222
HhaI GCGC 2 cut(s) 16, 409
Hin1II CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
Hin6I GCGC 2 cut(s) 14, 407
HinP1I GCGC 2 cut(s) 14, 407
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HinfI GANTC 3 cut(s) 188, 749, 1296
HpaI GTTAAC 1 cut(s) 891
HpaII CCGG 2 cut(s) 251, 1222
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 3 cut(s) 300, 727, 891
Hpy188I TCNGA 5 cut(s) 141, 184, 484, 517, 808
Hpy188III TCNNGA 3 cut(s) 21, 96, 617
Hpy8I GTNNAC 3 cut(s) 300, 727, 891
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 7 cut(s) 78, 83, 239, 315, 715, 1032, 1073
HpyCH4III ACNGT 3 cut(s) 37, 222, 480
HpyF10VI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
HpyF3I CTNAG 5 cut(s) 204, 424, 472, 516, 879
Hsp92II CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
HspAI GCGC 2 cut(s) 14, 407
KroI GCCGGC 1 cut(s) 1221
KroNI GCCGGC 1 cut(s) 1223
Ksp22I TGATCA 1 cut(s) 144
KspAI GTTAAC 1 cut(s) 891
Kzo9I GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
LguI GCTCTTC 2 cut(s) 141, 379
LmnI GCTCC 2 cut(s) 66, 1066
Lsp1109I GCAGC 5 cut(s) 38, 41, 381, 800, 1192
LweI GCATC 4 cut(s) 865, 1161, 1180, 1279
MaeI CTAG 2 cut(s) 240, 1244
MalI GATC 6 cut(s) 85, 146, 441, 505, 774, 1019
MboI GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
MboII GAAGA 6 cut(s) 128, 366, 371, 730, 773, 1201
MflI RGATCY 1 cut(s) 503
MhlI GDGCHC 2 cut(s) 459, 687
MlsI TGGCCA 1 cut(s) 293
MluCI AATT 5 cut(s) 268, 650, 735, 1049, 1281
MluNI TGGCCA 1 cut(s) 293
MmeI TCCRAC 4 cut(s) 381, 394, 462, 1180
Mox20I TGGCCA 1 cut(s) 293
Mph1103I ATGCAT 1 cut(s) 784
MroNI GCCGGC 1 cut(s) 1221
MscI TGGCCA 1 cut(s) 293
MseI TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1271
Msp20I TGGCCA 1 cut(s) 293
MspA1I CMGCKG 1 cut(s) 791
MspI CCGG 2 cut(s) 251, 1222
MspR9I CCNGG 2 cut(s) 169, 754
Mva1269I GAATGC 1 cut(s) 1000
MvaI CCWGG 2 cut(s) 169, 754
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 7 cut(s) 38, 404, 788, 833, 1073, 1082, 1205
NaeI GCCGGC 1 cut(s) 1223
NdeII GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
NgoMIV GCCGGC 1 cut(s) 1221
NlaIII CATG 7 cut(s) 298, 494, 569, 695, 834, 976, 1212
NlaIV GGNNCC 1 cut(s) 255
NsiI ATGCAT 1 cut(s) 784
NspI RCATGY 2 cut(s) 695, 834
PaeI GCATGC 1 cut(s) 695
PciI ACATGT 1 cut(s) 830
PciSI GCTCTTC 2 cut(s) 141, 379
PctI GAATGC 1 cut(s) 1000
PdiI GCCGGC 1 cut(s) 1223
PfeI GAWTC 3 cut(s) 188, 749, 1296
Pfl23II CGTACG 1 cut(s) 192
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 8 cut(s) 28, 31, 43, 371, 397, 790, 826, 1207
PscI ACATGT 1 cut(s) 830
Psp124BI GAGCTC 1 cut(s) 687
Psp6I CCWGG 2 cut(s) 167, 752
PspFI CCCAGC 1 cut(s) 234
PspGI CCWGG 2 cut(s) 167, 752
PspLI CGTACG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 255
PspPI GGNCC 3 cut(s) 248, 253, 1117
PstNI CAGNNNCTG 1 cut(s) 1205
PsuI RGATCY 1 cut(s) 503
PvuII CAGCTG 1 cut(s) 791
RsaI GTAC 3 cut(s) 194, 664, 1146
RsaNI GTAC 3 cut(s) 193, 663, 1145
SacI GAGCTC 1 cut(s) 687
SapI GCTCTTC 2 cut(s) 141, 379
SaqAI TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1271
SatI GCNGC 8 cut(s) 27, 30, 42, 370, 396, 789, 825, 1206
Sau3AI GATC 6 cut(s) 83, 144, 439, 503, 772, 1017
Sau96I GGNCC 3 cut(s) 248, 253, 1117
ScaI AGTACT 2 cut(s) 664, 1146
ScrFI CCNGG 2 cut(s) 169, 754
SduI GDGCHC 2 cut(s) 459, 687
SfaNI GCATC 4 cut(s) 865, 1161, 1180, 1279
SfcI CTRYAG 1 cut(s) 1310
SinI GGWCC 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 364, 848
SmoI CTYRAG 2 cut(s) 364, 848
SphI GCATGC 1 cut(s) 695
Sse9I AATT 5 cut(s) 268, 650, 735, 1049, 1281
SsiI CCGC 8 cut(s) 42, 46, 54, 64, 89, 396, 824, 1219
SspMI CTAG 2 cut(s) 240, 1244
SstI GAGCTC 1 cut(s) 687
StyD4I CCNGG 2 cut(s) 167, 752
TaaI ACNGT 3 cut(s) 37, 222, 480
TaqI TCGA 2 cut(s) 616, 1294
TasI AATT 5 cut(s) 268, 650, 735, 1049, 1281
TatI WGTACW 2 cut(s) 662, 1144
TauI GCSGC 3 cut(s) 44, 398, 827
TfiI GAWTC 3 cut(s) 188, 749, 1296
Tru1I TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1271
Tru9I TTAA 7 cut(s) 117, 287, 431, 890, 902, 956, 1271
TscAI CASTG 5 cut(s) 16, 227, 459, 661, 775
TseI GCWGC 5 cut(s) 26, 29, 369, 788, 1205
TspDTI ATGAA 8 cut(s) 201, 327, 345, 510, 601, 663, 774, 1202
TspGWI ACGGA 1 cut(s) 210
TspRI CASTG 5 cut(s) 16, 227, 459, 661, 775
VpaK11BI GGWCC 1 cut(s) 253
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 1 cut(s) 650
XceI RCATGY 2 cut(s) 695, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 835
XmiI GTMKAC 2 cut(s) 299, 726
XspI CTAG 2 cut(s) 240, 1244
ZrmI AGTACT 2 cut(s) 664, 1146
Zsp2I ATGCAT 1 cut(s) 784
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.