MD04G1132700.v1.1
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0012189
Physical Location & Seq
Forward (+)
21951773 .. 21954032
2260 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1132700.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGATTCCCACCGCAATTAAGCTATCAGGCTCTGCCGCCACTGTCGCTCGAACCGCCAAGCTTGGGCCCTCCATACGATCACCGCTGTTCAGACTAGTCCACGGCGGGATCAACGGCTCAAACGCCAACCCTGTTGCTCTTCAGATGATCAACTACGCCCTCTCTCACGCCAGGTCTCAGAAATCAGATGAATCGTATGCGCAAGGTCTGCTTGTACTGGAACAGTGCCTTTCGACTCAGACGAGTGAAGGGCAAGACTCTGCTGGTGATAATTCAAGGGGAATGGTGTTATTGGCCATGTCCACTTTATCATCTGAAAGAGGAAATTTTGATGAAGCAATGGAGAAACTGCAAAAGGTTCAAGATTTAACCAGCTCTTCATTTGGTGTAAGGGTTGCGGCCTTGGAGGCTCTTGTCGGACTTCACTTAGAGTTAGAGCAGGATGATACTTCATCAGTGCTCGCAGATAAATGCTTAGAACTGTTGGTGAAGAATGAGCCTGAATCTAATAGTGGAGATTTTATAAATGCTCGCGCTAGAGCAGTAAAAGGGCTTGTTGAACTTGTCCATGGTAATGCTGCATCAGCTGAGTCGTTCTTTCAAGGACTTAAGGACAACCGGGCAATCACCGGTAGTACTGCTTTATCCTATGGAGAATTCTTGCATGCAACACAGAACTTTTCATTGGCGAAGGATGTCTACCAGAATGTTATTCAAGGGGGTTCAAAGAATGAAGAGCTTGGTAACTCAAATGCATTAGCAGCCTGTAATATGTCAGCAGAGGAAGTTTCCTTAGGGGCCATGTGTGCTTTGGGACAACTTGAGGCTCATTTGGGAAACTTTGCTGATGCGGAGGAGATATTGACTAAGGCTTTAACGATAACAGAGGAACGTTTTGGTTCTCATCACCCCAGGGTTGGTGTTGTTTTAACCTGCATAGCTCTCATGTTTCGACGTAAAGCAATGCTAGAGCATTCTAGTGCTCTTTTGATTCAAGAGGGACTTTATAGAAGGGCAATAGAGTTGCTGAAAGCCCCACCATTGGACACAGAAGGTACCGAAGCAAATGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTAATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_10

Protein Analysis

371

Amino Acids

39.4

Weight (kDa)

5.29

Isoelectric Point (pI)

33.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_10 PF13374 265 - 304 2.1e-06 Tetratricopeptide repeat
TPR_12 PF13424 268 - 324 1.8e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 270 - 328 1e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012189)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G02130
fragaria_vesca FvH4_6g13250
malus_domestica MD04G1132700.v1.1 MD12G1145400.v1.1
prunus_persica Prupe.6G259100_v2.0.a1 Prupe.6G259100_v2.0.a1
pyrus_communis pycom04g12060 pycom12g13980
rosa_chinensis RchiOBHm_Chr3g0466081
rosa_laevigata RLG00000024604
rosa_multiflora Rmu_sc0005135.1_g000005 Rmu_sc0007597.1_g000006
rosa_roxburghii Rroxscaffold_6G00414810
rosa_rugosa Rorug03G0079400 Rorug03G0079500
rosa_samantha Rh3BG146600 Rh3CG147500 Rh3DG147600
rosa_wichuraiana Rw3G011850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
Acc16I TGCGCA 1 cut(s) 201
Acc36I ACCTGC 1 cut(s) 941
Acc65I GGTACC 1 cut(s) 1055
AccB1I GGYRCC 1 cut(s) 1055
AccI GTMKAC 1 cut(s) 699
AccII CGCG 1 cut(s) 534
AciI CCGC 7 cut(s) 12, 36, 54, 83, 105, 398, 851
AclI AACGTT 1 cut(s) 892
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 294
AcsI RAATTY 2 cut(s) 325, 656
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 3 cut(s) 216, 637, 1057
AfiI CCNNNNNNNGG 3 cut(s) 63, 917, 1042
AflII CTTAAG 1 cut(s) 608
AgeI ACCGGT 1 cut(s) 629
AgsI TTSAA 7 cut(s) 276, 362, 560, 602, 716, 726, 995
AhlI ACTAGT 1 cut(s) 94
AjnI CCWGG 2 cut(s) 170, 911
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 6 cut(s) 22, 61, 375, 587, 739, 941
AluI AGCT 6 cut(s) 22, 61, 375, 587, 739, 941
Alw21I GWGCWC 2 cut(s) 462, 985
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 116
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 5 cut(s) 65, 294, 399, 798, 1089
ApaI GGGCCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 578, 761
ApoI RAATTY 2 cut(s) 325, 656
AsiGI ACCGGT 1 cut(s) 629
Asp718I GGTACC 1 cut(s) 1055
AspLEI GCGC 2 cut(s) 202, 536
AspS9I GGNCC 4 cut(s) 65, 66, 798, 1090
AsuC2I CCSGG 1 cut(s) 620
AsuHPI GGTGA 5 cut(s) 72, 278, 499, 619, 899
AxyI CCTNAGG 1 cut(s) 793
BaeGI GKGCMC 1 cut(s) 69
BalI TGGCCA 1 cut(s) 296
BanI GGYRCC 1 cut(s) 1055
BanII GRGCYC 1 cut(s) 69
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
Bbv12I GWGCWC 2 cut(s) 462, 985
BbvI GCAGC 2 cut(s) 565, 773
BceAI ACGGC 2 cut(s) 118, 130
BciT130I CCWGG 2 cut(s) 172, 913
BclI TGATCA 1 cut(s) 147
BcnI CCSGG 1 cut(s) 620
BcoDI GTCTC 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 94
BfaI CTAG 4 cut(s) 95, 537, 968, 978
BfrI CTTAAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 941
BglI GCCNNNNNGGC 1 cut(s) 407
BisI GCNGC 4 cut(s) 36, 399, 579, 762
BlsI GCNGC 4 cut(s) 37, 400, 580, 763
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 3 cut(s) 172, 620, 913
BmgT120I GGNCC 4 cut(s) 65, 66, 798, 1090
BmiI GGNNCC 3 cut(s) 67, 799, 1057
BmrFI CCNGG 3 cut(s) 172, 620, 913
BmsI GCATC 2 cut(s) 590, 838
BpuEI CTTGAG 1 cut(s) 842
BpuMI CCSGG 1 cut(s) 620
BsaI GGTCTC 1 cut(s) 180
BsaJI CCNNGG 5 cut(s) 100, 402, 568, 911, 912
BsaWI WCCGGW 1 cut(s) 629
Bsc4I CCNNNNNNNGG 3 cut(s) 63, 917, 1042
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 1 cut(s) 222
Bse21I CCTNAGG 1 cut(s) 793
Bse3DI GCAATG 2 cut(s) 345, 969
BseBI CCWGG 2 cut(s) 172, 913
BseDI CCNNGG 5 cut(s) 100, 402, 568, 911, 912
BseGI GGATG 2 cut(s) 448, 700
BseLI CCNNNNNNNGG 3 cut(s) 63, 917, 1042
BseMI GCAATG 2 cut(s) 345, 969
BseMII CTCAG 3 cut(s) 191, 251, 579
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 869
BseSI GKGCMC 1 cut(s) 69
BseXI GCAGC 2 cut(s) 565, 773
Bsh1236I CGCG 1 cut(s) 534
BshFI GGCC 5 cut(s) 67, 296, 401, 800, 1091
BshNI GGYRCC 1 cut(s) 1055
BshTI ACCGGT 1 cut(s) 629
BsiHKAI GWGCWC 2 cut(s) 462, 985
BsiSI CCGG 2 cut(s) 619, 630
BslFI GGGAC 2 cut(s) 828, 1014
BslI CCNNNNNNNGG 3 cut(s) 63, 917, 1042
BsmAI GTCTC 1 cut(s) 180
BsmFI GGGAC 2 cut(s) 828, 1014
BsmI GAATGC 1 cut(s) 973
BsnI GGCC 5 cut(s) 67, 296, 401, 800, 1091
Bso31I GGTCTC 1 cut(s) 180
Bsp120I GGGCCC 1 cut(s) 65
Bsp1286I GDGCHC 3 cut(s) 69, 462, 985
Bsp143I GATC 3 cut(s) 77, 108, 147
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 7 cut(s) 12, 36, 54, 83, 105, 398, 851
BspANI GGCC 5 cut(s) 67, 296, 401, 800, 1091
BspCNI CTCAG 3 cut(s) 190, 250, 580
BspFNI CGCG 1 cut(s) 534
BspLI GGNNCC 3 cut(s) 67, 799, 1057
BspMI ACCTGC 1 cut(s) 941
BspPI GGATC 1 cut(s) 116
BspQI GCTCTTC 3 cut(s) 144, 382, 729
BspT107I GGYRCC 1 cut(s) 1055
BspTI CTTAAG 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 180
BsrDI GCAATG 2 cut(s) 345, 969
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 5 cut(s) 100, 402, 568, 911, 912
BssMI GATC 3 cut(s) 77, 108, 147
BssT1I CCWWGG 2 cut(s) 402, 568
Bst2UI CCWGG 2 cut(s) 172, 913
Bst4CI ACNGT 3 cut(s) 43, 225, 483
Bst6I CTCTTC 3 cut(s) 144, 382, 729
BstAFI CTTAAG 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 208
BstC8I GCNNGC 3 cut(s) 462, 532, 666
BstDEI CTNAG 7 cut(s) 177, 237, 427, 475, 588, 793, 867
BstDSI CCRYGG 2 cut(s) 100, 568
BstF5I GGATG 2 cut(s) 448, 700
BstFNI CGCG 1 cut(s) 534
BstHHI GCGC 2 cut(s) 202, 536
BstKTI GATC 3 cut(s) 80, 111, 150
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 77, 108, 147
BstMWI GCNNNNNNNGC 7 cut(s) 44, 53, 208, 407, 584, 761, 806
BstNI CCWGG 2 cut(s) 172, 913
BstNSI RCATGY 1 cut(s) 668
BstSCI CCNGG 3 cut(s) 170, 618, 911
BstSLI GKGCMC 1 cut(s) 69
BstUI CGCG 1 cut(s) 534
BstV1I GCAGC 2 cut(s) 565, 773
Bsu36I CCTNAGG 1 cut(s) 793
BsuRI GGCC 5 cut(s) 67, 296, 401, 800, 1091
BtgI CCRYGG 2 cut(s) 100, 568
BtsCI GGATG 2 cut(s) 448, 700
BtsIMutI CAGTG 3 cut(s) 39, 230, 462
BveI ACCTGC 1 cut(s) 941
Cac8I GCNNGC 3 cut(s) 462, 532, 666
CaiI CAGNNNCTG 1 cut(s) 32
CfoI GCGC 2 cut(s) 202, 536
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 4 cut(s) 65, 66, 798, 1090
Csp6I GTAC 3 cut(s) 215, 636, 1056
CspAI ACCGGT 1 cut(s) 629
CviAII CATG 5 cut(s) 298, 569, 665, 802, 946
CviQI GTAC 3 cut(s) 215, 636, 1056
DdeI CTNAG 7 cut(s) 177, 237, 427, 475, 588, 793, 867
DpnI GATC 3 cut(s) 79, 110, 149
DpnII GATC 3 cut(s) 77, 108, 147
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 3 cut(s) 144, 382, 729
EarI CTCTTC 3 cut(s) 144, 382, 729
Eco130I CCWWGG 2 cut(s) 402, 568
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 180
Eco57I CTGAAG 1 cut(s) 125
Eco81I CCTNAGG 1 cut(s) 793
EcoO109I RGGNCCY 1 cut(s) 66
EcoRI GAATTC 1 cut(s) 656
EcoRII CCWGG 2 cut(s) 170, 911
EcoT14I CCWWGG 2 cut(s) 402, 568
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 402, 568
FaeI CATG 5 cut(s) 301, 572, 668, 805, 949
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 987, 1019
FaqI GGGAC 2 cut(s) 828, 1014
FatI CATG 5 cut(s) 297, 568, 664, 801, 945
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 1 cut(s) 147
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 36, 399, 579, 762
FokI GGATG 2 cut(s) 455, 707
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 4 cut(s) 36, 399, 579, 762
FspBI CTAG 4 cut(s) 95, 537, 968, 978
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 2 cut(s) 201, 535
GluI GCNGC 4 cut(s) 36, 399, 579, 762
HaeIII GGCC 5 cut(s) 67, 296, 401, 800, 1091
HapII CCGG 2 cut(s) 619, 630
HhaI GCGC 2 cut(s) 202, 536
Hin1II CATG 5 cut(s) 301, 572, 668, 805, 949
Hin6I GCGC 2 cut(s) 200, 534
HinP1I GCGC 2 cut(s) 200, 534
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 7 cut(s) 4, 191, 235, 257, 503, 590, 991
HpaII CCGG 2 cut(s) 619, 630
HphI GGTGA 5 cut(s) 72, 278, 499, 619, 899
Hpy166II GTNNAC 3 cut(s) 100, 303, 700
Hpy188I TCNGA 7 cut(s) 92, 144, 180, 187, 240, 316, 419
Hpy188III TCNNGA 2 cut(s) 362, 995
Hpy8I GTNNAC 3 cut(s) 100, 303, 700
Hpy99I CGWCG 1 cut(s) 957
HpyAV CCTTC 4 cut(s) 242, 685, 1005, 1046
HpyCH4III ACNGT 3 cut(s) 43, 225, 483
HpyCH4IV ACGT 2 cut(s) 892, 955
HpyCH4V TGCA 7 cut(s) 352, 581, 664, 668, 755, 936, 1097
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 53, 208, 407, 584, 761, 806
HpyF3I CTNAG 7 cut(s) 177, 237, 427, 475, 588, 793, 867
HpySE526I ACGT 2 cut(s) 892, 955
Hsp92II CATG 5 cut(s) 301, 572, 668, 805, 949
HspAI GCGC 2 cut(s) 200, 534
KpnI GGTACC 1 cut(s) 1059
Ksp22I TGATCA 1 cut(s) 147
Kzo9I GATC 3 cut(s) 77, 108, 147
LguI GCTCTTC 3 cut(s) 144, 382, 729
Lsp1109I GCAGC 2 cut(s) 565, 773
LweI GCATC 2 cut(s) 590, 838
MaeI CTAG 4 cut(s) 95, 537, 968, 978
MaeII ACGT 2 cut(s) 892, 955
MaeIII GTNAC 1 cut(s) 743
MalI GATC 3 cut(s) 79, 110, 149
MboI GATC 3 cut(s) 77, 108, 147
MboII GAAGA 4 cut(s) 131, 369, 502, 746
MhlI GDGCHC 3 cut(s) 69, 462, 985
MlsI TGGCCA 1 cut(s) 296
MluCI AATT 4 cut(s) 15, 271, 325, 656
MluNI TGGCCA 1 cut(s) 296
MlyI GAGTC 3 cut(s) 229, 251, 599
MmeI TCCRAC 1 cut(s) 397
Mox20I TGGCCA 1 cut(s) 296
Mph1103I ATGCAT 1 cut(s) 757
MscI TGGCCA 1 cut(s) 296
MseI TTAA 5 cut(s) 18, 368, 609, 875, 929
MslI CAYNNNNRTG 2 cut(s) 573, 978
Msp20I TGGCCA 1 cut(s) 296
MspA1I CMGCKG 2 cut(s) 85, 587
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 2 cut(s) 619, 630
MspR9I CCNGG 3 cut(s) 172, 620, 913
Mva1269I GAATGC 1 cut(s) 973
MvaI CCWGG 2 cut(s) 172, 913
MvnI CGCG 1 cut(s) 534
MwoI GCNNNNNNNGC 7 cut(s) 44, 53, 208, 407, 584, 761, 806
NciI CCSGG 1 cut(s) 620
NcoI CCATGG 1 cut(s) 568
NdeII GATC 3 cut(s) 77, 108, 147
NlaIII CATG 5 cut(s) 301, 572, 668, 805, 949
NlaIV GGNNCC 3 cut(s) 67, 799, 1057
NsbI TGCGCA 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PasI CCCWGGG 1 cut(s) 912
PciSI GCTCTTC 3 cut(s) 144, 382, 729
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PctI GAATGC 1 cut(s) 973
PfeI GAWTC 4 cut(s) 4, 191, 503, 991
PinAI ACCGGT 1 cut(s) 629
PkrI GCNGC 4 cut(s) 37, 400, 580, 763
PleI GAGTC 3 cut(s) 229, 251, 598
PpsI GAGTC 3 cut(s) 229, 251, 598
PsiI TTATAA 1 cut(s) 524
Psp1406I AACGTT 1 cut(s) 892
Psp6I CCWGG 2 cut(s) 170, 911
PspGI CCWGG 2 cut(s) 170, 911
PspN4I GGNNCC 3 cut(s) 67, 799, 1057
PspOMI GGGCCC 1 cut(s) 65
PspPI GGNCC 4 cut(s) 65, 66, 798, 1090
PstNI CAGNNNCTG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 587
RsaI GTAC 3 cut(s) 216, 637, 1057
RsaNI GTAC 3 cut(s) 215, 636, 1056
RseI CAYNNNNRTG 2 cut(s) 573, 978
SapI GCTCTTC 3 cut(s) 144, 382, 729
SaqAI TTAA 5 cut(s) 18, 368, 609, 875, 929
SatI GCNGC 4 cut(s) 36, 399, 579, 762
Sau3AI GATC 3 cut(s) 77, 108, 147
Sau96I GGNCC 4 cut(s) 65, 66, 798, 1090
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 3 cut(s) 229, 251, 599
ScrFI CCNGG 3 cut(s) 172, 620, 913
SduI GDGCHC 3 cut(s) 69, 462, 985
SfaNI GCATC 2 cut(s) 590, 838
SmiMI CAYNNNNRTG 2 cut(s) 573, 978
SmlI CTYRAG 2 cut(s) 608, 821
SmoI CTYRAG 2 cut(s) 608, 821
SpeI ACTAGT 1 cut(s) 94
SphI GCATGC 1 cut(s) 668
Sse9I AATT 4 cut(s) 15, 271, 325, 656
SsiI CCGC 7 cut(s) 12, 36, 54, 83, 105, 398, 851
SspMI CTAG 4 cut(s) 95, 537, 968, 978
StyD4I CCNGG 3 cut(s) 170, 618, 911
StyI CCWWGG 2 cut(s) 402, 568
TaaI ACNGT 3 cut(s) 43, 225, 483
TaiI ACGT 2 cut(s) 895, 958
TaqI TCGA 3 cut(s) 49, 233, 952
TasI AATT 4 cut(s) 15, 271, 325, 656
TatI WGTACW 2 cut(s) 214, 635
TauI GCSGC 2 cut(s) 38, 401
TfiI GAWTC 4 cut(s) 4, 191, 503, 991
Tru1I TTAA 5 cut(s) 18, 368, 609, 875, 929
Tru9I TTAA 5 cut(s) 18, 368, 609, 875, 929
TscAI CASTG 3 cut(s) 46, 230, 462
TseI GCWGC 2 cut(s) 578, 761
TspDTI ATGAA 6 cut(s) 204, 348, 369, 441, 672, 747
TspRI CASTG 3 cut(s) 46, 230, 462
Vha464I CTTAAG 1 cut(s) 608
XapI RAATTY 2 cut(s) 325, 656
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 808
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 4 cut(s) 95, 537, 968, 978
ZrmI AGTACT 1 cut(s) 637
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.