AT5G02320
MYB Family

myb domain protein 3r-5

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
482793 .. 486473
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02320.1

Sequence Viewer

Length: 1647 bp
ATGAGCTCAAGTTCGAATCCACCGGTTTGTTCACCGGAAAAGGAGGAAAGAAGTGAAATGAAAATTGAGATTCAATGTATGGAGAATAAGCAACCATTAGCTGCTTCTTGCTCTTCTGCATCCGAAGGTAGTGGCTGTTTCTTCCTCAAGTCACCTGAAATCGCAACTCCTGCCACAGTATCTTCATTTCCTCGGAGGACTAGTGGACCTATGAGACGAGCAAAAGGTGGTTGGACTCCAGAGGAGGATGAGACACTTAGACGAGCAGTTGAAAAGTATAAGGGGAAGAGGTGGAAGAAAATAGCGGAATTTTTCCCAGAGAGAACAGAAGTCCAATGCTTGCACAGGTGGCAGAAAGTTCTTAATCCAGAGCTTGTTAAAGGACCTTGGACTCAAGAGGAGGATGATAAAATCGTTGAACTTGTAAAAAAATATGGACCTGCCAAATGGTCTGTCATCGCCAAGTCCTTACCAGGTCGTATTGGGAAACAATGTCGAGAAAGGTGGCACAACCATTTAAATCCTGGTATTAGAAAGGATGCTTGGACCGTAGAAGAAGAATCAGCTCTCATGAATTCTCATCGAATGTACGGAAACAAATGGGCGGAAATTGCTAAGGTTTTACCAGGAAGGACTGATAACGCCATAAAGAACCATTGGAATAGTTCACTGAAGAAAAAATTAGAGTTCTACTTAGCAACTGGTAACTTGCCACCGCCAGCAAGCAAATTCATCGTTCTGAAAGATATTGCTGATGGAGACAGAGATTCCAAGCAGTCTAGTGCAACTAAACCTTTCAAGGATTCTGATTCGCTTACCCAAACCTCTTCAGGAAATACAGATTCAAATGAAGTTGGAAGAGACCATTTTGACTCTTCTTCCGCTCTGCTTGAAGAAGTAGCTGCTTCACGAAGAATCGGTGTCAATGAGTATGCTTGCTCTCCTGTTGAGTACAAGCCTCAGTTGCCTAATCTGGAACCAATTTCAGAGGAAGTCAGAATCAACTCAAAAGCTTATTTTGAGAGATCAATCCAGAGGAAAGTAGAAAACGGGTTTGGAACTCCAAAGCATGGGAATTTATACTATAAGTCTCCACTTGACTATTACTTTCCATCAGAAGCGGATCTGCAACATATGTACGGATATGAATGTGGTTGCAGTCCCGGTGCTGCATCACCAGTCAGCTTAATGACTACACCCTGTAATAAAGACAGTGGTTTAACTGCAACGAGAAGTCCTGAATCTTTCTTGAGAGAAGCTGCTAGGACTTTTCCAAACACACCTTCTATTTTTAGGAAAAGGCGAAAGGTTGTTTTGGCAGCGAAAACAGATGCTGTTGTTGTTGTTAATGGTGTAGTTAAGGAAGTTGATCGAAAAGAAGAAAGTAAAGATATGAGAAAAAGTTTGTTGCTGGAGACAACTGATAATTGCAGTGATGATGAAGAACTCGGGTTAAATGGAAATGCTTTCAATTTGTCTCCACCATATCGGTTAAGAGCTAAAAGAACAGCTGTAATCAAATCAAGACAGCTTGAGTTTACATCTGAAAAGGAGAAGCAGCCAGATAATGAGATTGAGTTTACATCTGCAAAAGAGAAGCAGCCTGATAATGAAATTAAAACGTCTGAGGAAGACAAGCCTGTGTAG

Protein Analysis

548

Amino Acids

61.73

Weight (kDa)

8.54

Isoelectric Point (pI)

62.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 75 - 121 1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 78 - 135 1.1e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 127 - 173 6.6e-20 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 130 - 189 3e-18 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 179 - 222 4.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 182 - 228 1.5e-10 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 1070
AccBSI CCGCTC 1 cut(s) 884
AciI CCGC 5 cut(s) 305, 605, 716, 882, 1121
AclWI GGATC 1 cut(s) 1131
AcsI RAATTY 4 cut(s) 308, 574, 728, 1075
AcuI CTGAAG 2 cut(s) 692, 813
AfaI GTAC 3 cut(s) 590, 953, 1139
AfiI CCNNNNNNNGG 1 cut(s) 1070
AgeI ACCGGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 74, 272, 419, 799, 846, 893, 1471
AhlI ACTAGT 1 cut(s) 200
AjnI CCWGG 3 cut(s) 472, 523, 625
AjuI GAANNNNNNNTTGG 6 cut(s) 526, 558, 1038, 1070, 1267, 1299
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 7 cut(s) 208, 245, 753, 855, 1095, 1409, 1482
AlwI GGATC 1 cut(s) 1131
AlwNI CAGNNNCTG 1 cut(s) 1334
Ama87I CYCGRG 1 cut(s) 1448
ApeKI GCWGC 7 cut(s) 101, 902, 1169, 1259, 1319, 1558, 1600
ApoI RAATTY 4 cut(s) 308, 574, 728, 1075
ArsI GACNNNNNNTTYG 2 cut(s) 438, 470
AsiGI ACCGGT 1 cut(s) 22
AspS9I GGNCC 4 cut(s) 206, 383, 437, 546
AsuC2I CCSGG 1 cut(s) 1164
AsuHPI GGTGA 3 cut(s) 24, 144, 1167
AsuII TTCGAA 1 cut(s) 14
AvaI CYCGRG 1 cut(s) 1448
AvaII GGWCC 4 cut(s) 206, 383, 437, 546
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 1638
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 7 cut(s) 88, 889, 1156, 1246, 1331, 1570, 1612
BccI CCATC 2 cut(s) 749, 1120
BcgI CGANNNNNNTGC 2 cut(s) 715, 749
BciT130I CCWGG 3 cut(s) 474, 525, 627
BcnI CCSGG 1 cut(s) 1164
BcoDI GTCTC 7 cut(s) 208, 245, 753, 855, 1095, 1409, 1482
BcuI ACTAGT 1 cut(s) 200
BfaI CTAG 3 cut(s) 201, 780, 1263
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 7 cut(s) 102, 903, 1170, 1260, 1320, 1559, 1601
BlsI GCNGC 7 cut(s) 103, 904, 1171, 1261, 1321, 1560, 1602
Bme1390I CCNGG 4 cut(s) 474, 525, 627, 1164
Bme18I GGWCC 4 cut(s) 206, 383, 437, 546
BmeT110I CYCGRG 1 cut(s) 1448
BmgT120I GGNCC 4 cut(s) 206, 383, 437, 546
BmiI GGNNCC 1 cut(s) 978
BmrFI CCNGG 4 cut(s) 474, 525, 627, 1164
BmsI GCATC 4 cut(s) 128, 529, 1181, 1321
BpiI GAAGAC 1 cut(s) 1638
BpmI CTGGAG 2 cut(s) 222, 1433
Bpu10I CCTNAGC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 14
BpuEI CTTGAG 4 cut(s) 131, 378, 1270, 1553
BpuMI CCSGG 1 cut(s) 1164
BsaI GGTCTC 1 cut(s) 855
BsaJI CCNNGG 2 cut(s) 191, 386
BsaWI WCCGGW 2 cut(s) 22, 34
BsaXI ACNNNNNCTCC 2 cut(s) 187, 217
Bsc4I CCNNNNNNNGG 1 cut(s) 1070
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 706, 1178
BseBI CCWGG 3 cut(s) 474, 525, 627
BseDI CCNNGG 2 cut(s) 191, 386
BseGI GGATG 4 cut(s) 119, 253, 409, 544
BseLI CCNNNNNNNGG 1 cut(s) 1070
BseMII CTCAG 2 cut(s) 974, 1617
BseNI ACTGG 2 cut(s) 706, 1178
BseRI GAGGAG 2 cut(s) 257, 413
BseXI GCAGC 7 cut(s) 88, 889, 1156, 1246, 1331, 1570, 1612
BshTI ACCGGT 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 8
BsiHKCI CYCGRG 1 cut(s) 1448
BsiSI CCGG 3 cut(s) 23, 35, 1164
BslFI GGGAC 1 cut(s) 1146
BslI CCNNNNNNNGG 1 cut(s) 1070
BsmAI GTCTC 7 cut(s) 208, 245, 753, 855, 1095, 1409, 1482
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 1146
Bso31I GGTCTC 1 cut(s) 855
BsoBI CYCGRG 1 cut(s) 1448
Bsp119I TTCGAA 1 cut(s) 14
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 1025, 1123, 1369
BspACI CCGC 5 cut(s) 305, 605, 716, 882, 1121
BspCNI CTCAG 2 cut(s) 973, 1618
BspHI TCATGA 1 cut(s) 570
BspLI GGNNCC 1 cut(s) 978
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 1 cut(s) 1131
BspQI GCTCTTC 1 cut(s) 118
BspT104I TTCGAA 1 cut(s) 14
BspTNI GGTCTC 1 cut(s) 855
BsrBI CCGCTC 1 cut(s) 884
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 2 cut(s) 706, 1178
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 191, 386
BssMI GATC 3 cut(s) 1025, 1123, 1369
BssT1I CCWWGG 1 cut(s) 386
Bst2UI CCWGG 3 cut(s) 474, 525, 627
Bst4CI ACNGT 3 cut(s) 178, 550, 1214
Bst6I CTCTTC 5 cut(s) 118, 281, 832, 853, 880
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBI TTCGAA 1 cut(s) 14
BstC8I GCNNGC 4 cut(s) 341, 720, 724, 937
BstDEI CTNAG 5 cut(s) 257, 615, 694, 960, 1626
BstF5I GGATG 4 cut(s) 119, 253, 409, 544
BstKTI GATC 3 cut(s) 1028, 1126, 1372
BstMAI GTCTC 7 cut(s) 208, 245, 753, 855, 1095, 1409, 1482
BstMBI GATC 3 cut(s) 1025, 1123, 1369
BstMWI GCNNNNNNNGC 4 cut(s) 170, 349, 611, 964
BstNI CCWGG 3 cut(s) 474, 525, 627
BstSCI CCNGG 4 cut(s) 472, 523, 625, 1162
BstV1I GCAGC 7 cut(s) 88, 889, 1156, 1246, 1331, 1570, 1612
BstV2I GAAGAC 1 cut(s) 1638
BstX2I RGATCY 1 cut(s) 1123
BstYI RGATCY 1 cut(s) 1123
BtgZI GCGATG 1 cut(s) 442
BtsCI GGATG 4 cut(s) 119, 253, 409, 544
BtsI GCAGTG 1 cut(s) 1438
BtsIMutI CAGTG 3 cut(s) 668, 1219, 1438
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 4 cut(s) 341, 720, 724, 937
CaiI CAGNNNCTG 1 cut(s) 1334
CciI TCATGA 1 cut(s) 570
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 4 cut(s) 206, 383, 437, 546
CsiI ACCWGGT 1 cut(s) 472
Csp6I GTAC 3 cut(s) 589, 952, 1138
CspAI ACCGGT 1 cut(s) 22
CviAII CATG 2 cut(s) 571, 1070
CviQI GTAC 3 cut(s) 589, 952, 1138
DdeI CTNAG 5 cut(s) 257, 615, 694, 960, 1626
DpnI GATC 3 cut(s) 1027, 1125, 1371
DpnII GATC 3 cut(s) 1025, 1123, 1369
DraI TTTAAA 1 cut(s) 519
Eam1104I CTCTTC 5 cut(s) 118, 281, 832, 853, 880
EarI CTCTTC 5 cut(s) 118, 281, 832, 853, 880
EciI GGCGGA 1 cut(s) 620
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 386
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 855
Eco47I GGWCC 4 cut(s) 206, 383, 437, 546
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 2 cut(s) 692, 813
Eco88I CYCGRG 1 cut(s) 1448
EcoICRI GAGCTC 1 cut(s) 6
EcoO109I RGGNCCY 1 cut(s) 383
EcoRI GAATTC 1 cut(s) 574
EcoRII CCWGG 3 cut(s) 472, 523, 625
EcoT14I CCWWGG 1 cut(s) 386
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 386
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 2 cut(s) 574, 1073
FaqI GGGAC 1 cut(s) 1146
FatI CATG 2 cut(s) 570, 1069
FauNDI CATATG 1 cut(s) 1134
Fnu4HI GCNGC 7 cut(s) 102, 903, 1170, 1260, 1320, 1559, 1601
FokI GGATG 4 cut(s) 106, 260, 416, 551
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 7 cut(s) 102, 903, 1170, 1260, 1320, 1559, 1601
FspBI CTAG 3 cut(s) 201, 780, 1263
GluI GCNGC 7 cut(s) 102, 903, 1170, 1260, 1320, 1559, 1601
GsuI CTGGAG 2 cut(s) 222, 1433
HapII CCGG 3 cut(s) 23, 35, 1164
Hin1II CATG 2 cut(s) 574, 1073
HindIII AAGCTT 1 cut(s) 1011
HpaII CCGG 3 cut(s) 23, 35, 1164
HphI GGTGA 3 cut(s) 24, 144, 1167
Hpy166II GTNNAC 5 cut(s) 32, 206, 668, 1539, 1581
Hpy188I TCNGA 9 cut(s) 124, 195, 741, 808, 988, 998, 1117, 1546, 1627
Hpy8I GTNNAC 5 cut(s) 32, 206, 668, 1539, 1581
HpyAV CCTTC 3 cut(s) 119, 624, 1293
HpyCH4III ACNGT 3 cut(s) 178, 550, 1214
HpyCH4IV ACGT 1 cut(s) 1622
HpyCH4V TGCA 9 cut(s) 119, 343, 785, 1129, 1158, 1172, 1226, 1431, 1589
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 349, 611, 964
HpyF3I CTNAG 5 cut(s) 257, 615, 694, 960, 1626
HpySE526I ACGT 1 cut(s) 1622
Hsp92II CATG 2 cut(s) 574, 1073
Kzo9I GATC 3 cut(s) 1025, 1123, 1369
LguI GCTCTTC 1 cut(s) 118
Lsp1109I GCAGC 7 cut(s) 88, 889, 1156, 1246, 1331, 1570, 1612
LweI GCATC 4 cut(s) 128, 529, 1181, 1321
MabI ACCWGGT 1 cut(s) 472
MaeI CTAG 3 cut(s) 201, 780, 1263
MaeII ACGT 1 cut(s) 1622
MaeIII GTNAC 2 cut(s) 150, 704
MalI GATC 3 cut(s) 1027, 1125, 1371
MbiI CCGCTC 1 cut(s) 884
MboI GATC 3 cut(s) 1025, 1123, 1369
MflI RGATCY 1 cut(s) 1123
MhlI GDGCHC 1 cut(s) 8
MlyI GAGTC 3 cut(s) 229, 385, 866
MmeI TCCRAC 2 cut(s) 212, 835
MspA1I CMGCKG 1 cut(s) 1511
MspI CCGG 3 cut(s) 23, 35, 1164
MspR9I CCNGG 4 cut(s) 474, 525, 627, 1164
MvaI CCWGG 3 cut(s) 474, 525, 627
MwoI GCNNNNNNNGC 4 cut(s) 170, 349, 611, 964
NciI CCSGG 1 cut(s) 1164
NdeI CATATG 1 cut(s) 1134
NdeII GATC 3 cut(s) 1025, 1123, 1369
NlaIII CATG 2 cut(s) 574, 1073
NlaIV GGNNCC 1 cut(s) 978
NmuCI GTSAC 1 cut(s) 150
NspV TTCGAA 1 cut(s) 14
PagI TCATGA 1 cut(s) 570
PciSI GCTCTTC 1 cut(s) 118
PflMI CCANNNNNTGG 1 cut(s) 1070
PinAI ACCGGT 1 cut(s) 22
PkrI GCNGC 7 cut(s) 103, 904, 1171, 1261, 1321, 1560, 1602
PleI GAGTC 3 cut(s) 229, 385, 866
PpsI GAGTC 3 cut(s) 229, 385, 866
PpuMI RGGWCCY 1 cut(s) 383
Psp124BI GAGCTC 1 cut(s) 8
Psp5II RGGWCCY 1 cut(s) 383
Psp6I CCWGG 3 cut(s) 472, 523, 625
PspGI CCWGG 3 cut(s) 472, 523, 625
PspN4I GGNNCC 1 cut(s) 978
PspPI GGNCC 4 cut(s) 206, 383, 437, 546
PspPPI RGGWCCY 1 cut(s) 383
PstNI CAGNNNCTG 1 cut(s) 1334
PsuI RGATCY 1 cut(s) 1123
PvuII CAGCTG 1 cut(s) 1511
RsaI GTAC 3 cut(s) 590, 953, 1139
RsaNI GTAC 3 cut(s) 589, 952, 1138
SacI GAGCTC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 118
SatI GCNGC 7 cut(s) 102, 903, 1170, 1260, 1320, 1559, 1601
Sau3AI GATC 3 cut(s) 1025, 1123, 1369
Sau96I GGNCC 4 cut(s) 206, 383, 437, 546
SchI GAGTC 3 cut(s) 229, 385, 866
ScrFI CCNGG 4 cut(s) 474, 525, 627, 1164
SduI GDGCHC 1 cut(s) 8
SexAI ACCWGGT 1 cut(s) 472
SfaNI GCATC 4 cut(s) 128, 529, 1181, 1321
SfuI TTCGAA 1 cut(s) 14
SinI GGWCC 4 cut(s) 206, 383, 437, 546
SmiI ATTTAAAT 1 cut(s) 519
SmlI CTYRAG 5 cut(s) 7, 146, 393, 1249, 1532
SmoI CTYRAG 5 cut(s) 7, 146, 393, 1249, 1532
SpeI ACTAGT 1 cut(s) 200
SsiI CCGC 5 cut(s) 305, 605, 716, 882, 1121
SspMI CTAG 3 cut(s) 201, 780, 1263
SstI GAGCTC 1 cut(s) 8
StyD4I CCNGG 4 cut(s) 472, 523, 625, 1162
StyI CCWWGG 1 cut(s) 386
SwaI ATTTAAAT 1 cut(s) 519
TaaI ACNGT 3 cut(s) 178, 550, 1214
TaiI ACGT 1 cut(s) 1625
TaqI TCGA 4 cut(s) 14, 496, 583, 1372
TatI WGTACW 1 cut(s) 951
TscAI CASTG 3 cut(s) 675, 1219, 1438
TseFI GTSAC 1 cut(s) 150
TseI GCWGC 7 cut(s) 101, 902, 1169, 1259, 1319, 1558, 1600
Tsp45I GTSAC 1 cut(s) 150
TspDTI ATGAA 8 cut(s) 74, 174, 587, 721, 864, 1161, 1455, 1626
TspGWI ACGGA 2 cut(s) 606, 1155
TspRI CASTG 3 cut(s) 675, 1219, 1438
Van91I CCANNNNNTGG 1 cut(s) 1070
VpaK11BI GGWCC 4 cut(s) 206, 383, 437, 546
XapI RAATTY 4 cut(s) 308, 574, 728, 1075
XcmI CCANNNNNNNNNTGG 1 cut(s) 521
XspI CTAG 3 cut(s) 201, 780, 1263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.