Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007734

Physical Location & Seq

Genomic Coordinates Forward (+)

6426181 .. 6429775

Gene Structure 3595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGTGTAGTATGTTTGCATTTTTAGGGGCTCACCTCCTTAAGAGAGCGTTGCTCATATCATATGTGAAATTTAGCTACTCCGTGGTGATGGGTGTGAGTTTGACTCTGATCAAGAGAGTCTCTCTGCTTCCCCTTCCCGCCAAATTCCGAACTTTGTCTCAGTTTTCATTCACCTTCTCCAATCACTATTGCTCCTCTCCTCTCAACCTAGACCATACTCTCCTCCATTTCACCTACGATTCCGAGTCATTCTTTGCCTCTCTCATCGATAATTCCACCCACAAGAGCCACTTGAATCAAATCCAAGCGCAGTTACTTGTACTTGGTTTCGAAGCCAGCAGCTTTTTAATCACCAAATTGGTCAACTGCAGCTCAAACCTCGGGTACATTTCATACGCCCGCCAGGTGTTCGATGAATTTACTGACCCGAATGTGTTCCTGTGGAATGCAATCCTTCGGGTCTATTCGAAGCACAATGCGTTTGCTGATGCCGTAGAAATGTATTGTAGGATGCAAGAGACCGGTGTGAGTCCAGATGGCTTTACTTTCCCTCATGTGCTCAAAGCTTGCGGTGGCTTGGCCGCGCTTGAAATGGGCCGCCGGGTTCATTGCCAGGTGTTTCGACATGGTTTTGAGTCGGATGTGTTTGTGCAGAACAGTCTCGTGGCCTTTTATGCCAAATGTGGTAGAGTAGAACGCGCTAGGATTGTGTTTGATGGGCTGGGTGAGAGGTCTGTTGTTTCGTGGACTTCGATTATTTCAGGGTATGCGCAGAATGGCCAGTGTTTGGAAGCTCTGAGAGTTTTTAGTGTGATGAGGGAGTTGAATGTTAGACCGGATTGGATTGTTTTGGTTAGTGTTCTCAAAGCGTATACTGATGTAGAGGACTTGGGACAGGGGAGGTCTGTTCATGGTTGTTTAGTTAAAATGGGACTTGAATTTGAACCTGACTTGGTCATTTCACTCACAGCCATGTATGCTAAAAGTGGGCAGGTGATGGTTGCCAGATCATTTTTTGATAAGATGGAAAGACCAAATGTAATGATGTGGAATGCTATGATTTCTGGCTATGCAAAGAACGGTCACGCTGAGAAAGCTGTAGAGCTATTCCGTGAGATGATCTCTTCTAGAAGCATTAGAATTGATTCAATTACTCTGAGGTCTGCTATCTCAGCATGCGCCCAGGTGGGTTCTCTTGAACTAGCGAAATGGATGGATGATTATATCAGCAAAAGTGAGTATAGAAATCATGTTTTTGTTAACACAGCCCTAATTGATATGTATGCAAAATGTGGTAGTGTAGATTTTGCTCGCATGGTCTTTGATAGAACACCTAATAAAGATGTTGTCGTCTGGAGTGCAATGATTGTGGGCTATGGATTGCATGGTCGAGGACAAGAAGCCATTGATGTTTACTATTCTATGCAGCAGGCTGGGGTGGTACCAAATGATGTTACCTTTCTTGGACTCCTTATCGCATGCAACCATTCAGGCCTTGTACATGAGGGATGGGAGCTTTTCCACCGCATGAGAGACTATGGGATTGAGCCTGGAAACCATCATTATTCGTGTGTGGTTGATCTTCTGGGACGTGCAGACCAGTTGGAACAGGCTTATGATTTTATAAAAAAGATGCCAATTGAACCTGGTGCAAGTGTATGGGGAGCACTTCTTAGTTCGTGCAAGATCCATCGAAATGTGACTTTGGGAGAATATGCTGCAGAAAAGCTTTTCTCATTAGATCCATATGAGATAGGGCATTATGTTCAACTGTCAAATCTCTATGCTTCAGCCCGATTATGGGATCGTGTTGTACATGTGCGAGTACTGATGAGGGAGAAAGGACTGATCAAGGGCCTTGGACATAGTTTGATTGAGATCAATGGAAAACTTCAGGCATTTCATGTAGGAGACAAGTCACATCCAAGGTCTAAGGAAATATATGAAGAGCTTGAGAGTCTAGAGAGGAGGTTGAAGGAGGCTGGATTTGTTCCACATACAGAATCCGTCCTGCATGATTTGAATTATGAAGAGACAGAGGAGACACTTTGCAATCATAGTGAGAGGCTGGCAATTGCTTATGGCCTCATCTGTACTGCTCCTGGAACTACACTAAGAATAACTAAAAACCTACGCGCGTGTGTGAATTGTCATGCAGCAACTAAGCTAATATCTAAGCTTGTCAACAGGGAGATAGTTGTCAGGGATGCAAAGCGTTTCCACCATTTCAAGGATGGATTTTGTTCCTGTGGAGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

754

Amino Acids

85.08

Weight (kDa)

7.36

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	143 - 190	5.4e-10	PPR repeat family
PPR_2	PF13041	245 - 290	8.4e-08	PPR repeat family
PPR	PF01535	247 - 277	2.5e-07	PPR repeat
PPR_2	PF13041	345 - 394	6.2e-11	PPR repeat family
PPR_1	PF12854	345 - 373	4.3e-08	PPR repeat
PPR	PF01535	349 - 376	1.1e-09	PPR repeat
PPR_2	PF13041	447 - 494	4e-08	PPR repeat family
E_motif	PF20431	564 - 626	8.3e-11	E motif
Eplus_motif	PF20430	634 - 658	1.8e-09	E+ motif
DYW_deaminase	PF14432	662 - 754	6.1e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02320 AT5G02320 AT5G02320
fragaria_vesca	FvH4_6g13670 FvH4_6g13670 FvH4_6g13670 FvH4_6g13670
malus_domestica	MD04G1129200.v1.1 MD12G1141900.v1.1
prunus_persica	Prupe.6G255400_v2.0.a1 Prupe.6G255400_v2.0.a1
pyrus_communis	pycom04g11740 pycom12g13660
rosa_chinensis	RchiOBHm_Chr3g0466541
rosa_laevigata	RLG00000024564
rosa_multiflora	Rmu_sc0003332.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414390
rosa_rugosa	Rorug03G0082300 Rorug03G0082400
rosa_samantha	Rh3AG129400 Rh3BG150700 Rh3CG150500 Rh3DG151400
rosa_wichuraiana	Rw3G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1625
AarI	CACCTGC	1 cut(s)	982
Acc16I	TGCGCA	1 cut(s)	771
Acc36I	ACCTGC	1 cut(s)	982
Acc65I	GGTACC	1 cut(s)	1441
AccB1I	GGYRCC	1 cut(s)	1441
AccB7I	CCANNNNNTGG	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	872
AccII	CGCG	4 cut(s)	584, 699, 2136, 2138
AciI	CCGC	6 cut(s)	138, 400, 570, 582, 598, 1525
AclWI	GGATC	3 cut(s)	1681, 1736, 1812
AcoI	YGGCCR	2 cut(s)	579, 778
AcsI	RAATTY	4 cut(s)	68, 143, 416, 938
AcuI	CTGAAG	2 cut(s)	1773, 1877
AfaI	GTAC	7 cut(s)	321, 386, 1443, 1500, 1815, 1827, 2095
AfiI	CCNNNNNNNGG	4 cut(s)	787, 1800, 1801, 2230
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	1816
AgeI	ACCGGT	1 cut(s)	521
AjiI	CACGTC	1 cut(s)	1592
AjnI	CCWGG	6 cut(s)	402, 612, 1182, 1549, 1645, 2101
Alw21I	GWGCWC	2 cut(s)	561, 1669
Alw26I	GTCTC	8 cut(s)	124, 162, 512, 665, 1527, 1905, 2027, 2036
AlwI	GGATC	3 cut(s)	1681, 1736, 1812
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	7 cut(s)	579, 595, 666, 778, 1492, 1855, 2083
ApeKI	GCWGC	5 cut(s)	339, 369, 1426, 1718, 2156
ApoI	RAATTY	4 cut(s)	68, 143, 416, 938
AsiGI	ACCGGT	1 cut(s)	521
Asp700I	GAANNNNTTC	2 cut(s)	434, 1144
Asp718I	GGTACC	1 cut(s)	1441
AspLEI	GCGC	6 cut(s)	310, 586, 701, 772, 1181, 2138
AspS9I	GGNCC	2 cut(s)	595, 1855
AsuC2I	CCSGG	1 cut(s)	602
AsuHPI	GGTGA	7 cut(s)	23, 97, 163, 223, 343, 737, 1006
AsuII	TTCGAA	2 cut(s)	330, 467
AvaI	CYCGRG	1 cut(s)	380
BalI	TGGCCA	1 cut(s)	780
BanI	GGYRCC	1 cut(s)	1441
BanII	GRGCYC	1 cut(s)	31
BauI	CACGAG	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	561, 1669
BbvI	GCAGC	5 cut(s)	351, 381, 1438, 1705, 2168
BceAI	ACGGC	1 cut(s)	476
BciT130I	CCWGG	6 cut(s)	404, 614, 1184, 1551, 1647, 2103
BclI	TGATCA	2 cut(s)	108, 1848
BcnI	CCSGG	1 cut(s)	602
BcoDI	GTCTC	8 cut(s)	124, 162, 512, 665, 1527, 1905, 2027, 2036
BfaI	CTAG	5 cut(s)	209, 702, 1128, 1202, 1961
BfmI	CTRYAG	3 cut(s)	367, 1098, 1719
BfrI	CTTAAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	7 cut(s)	340, 370, 582, 598, 1427, 1719, 2157
BlsI	GCNGC	7 cut(s)	341, 371, 583, 599, 1428, 1720, 2158
BmcAI	AGTACT	1 cut(s)	1827
Bme1390I	CCNGG	7 cut(s)	404, 602, 614, 1184, 1551, 1647, 2103
BmeT110I	CYCGRG	1 cut(s)	380
BmgBI	CACGTC	1 cut(s)	1592
BmgT120I	GGNCC	2 cut(s)	595, 1855
BmiI	GGNNCC	1 cut(s)	1443
BmrFI	CCNGG	7 cut(s)	404, 602, 614, 1184, 1551, 1647, 2103
BmsI	GCATC	4 cut(s)	478, 501, 1623, 2197
BplI	GAGNNNNNCTC	8 cut(s)	36, 68, 88, 120, 106, 138, 1106, 1138
BpmI	CTGGAG	1 cut(s)	1375
Bpu14I	TTCGAA	2 cut(s)	330, 467
BpuEI	CTTGAG	1 cut(s)	1973
BpuMI	CCSGG	1 cut(s)	602
Bsa29I	ATCGAT	1 cut(s)	267
BsaBI	GATNNNNATC	1 cut(s)	1877
BsaI	GGTCTC	1 cut(s)	512
BsaJI	CCNNGG	5 cut(s)	81, 379, 1182, 1858, 1925
BsaWI	WCCGGW	2 cut(s)	521, 835
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	4 cut(s)	787, 1800, 1801, 2230
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	2 cut(s)	781, 1600
Bse3DI	GCAATG	2 cut(s)	607, 1368
Bse8I	GATNNNNATC	1 cut(s)	1877
BseBI	CCWGG	6 cut(s)	404, 614, 1184, 1551, 1647, 2103
BseCI	ATCGAT	1 cut(s)	267
BseDI	CCNNGG	5 cut(s)	81, 379, 1182, 1858, 1925
BseGI	GGATG	8 cut(s)	516, 646, 1218, 1222, 1514, 1921, 2212, 2239
BseJI	GATNNNNATC	1 cut(s)	1877
BseLI	CCNNNNNNNGG	4 cut(s)	787, 1800, 1801, 2230
BseMI	GCAATG	2 cut(s)	607, 1368
BseMII	CTCAG	5 cut(s)	173, 788, 1080, 1148, 1185
BseNI	ACTGG	2 cut(s)	781, 1600
BseRI	GAGGAG	5 cut(s)	184, 189, 212, 1981, 2054
BseXI	GCAGC	5 cut(s)	351, 381, 1438, 1705, 2168
BseYI	CCCAGC	2 cut(s)	721, 1433
BsgI	GTGCAG	2 cut(s)	671, 1614
Bsh1236I	CGCG	4 cut(s)	584, 699, 2136, 2138
BshFI	GGCC	7 cut(s)	581, 597, 668, 780, 1494, 1857, 2085
BshNI	GGYRCC	1 cut(s)	1441
BshTI	ACCGGT	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	561, 1669
BsiHKCI	CYCGRG	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	522, 601, 836
BslFI	GGGAC	3 cut(s)	906, 945, 1602
BslI	CCNNNNNNNGG	4 cut(s)	787, 1800, 1801, 2230
BsmAI	GTCTC	8 cut(s)	124, 162, 512, 665, 1527, 1905, 2027, 2036
BsmFI	GGGAC	3 cut(s)	906, 945, 1602
BsmI	GAATGC	2 cut(s)	451, 1057
BsnI	GGCC	7 cut(s)	581, 597, 668, 780, 1494, 1857, 2085
Bso31I	GGTCTC	1 cut(s)	512
BsoBI	CYCGRG	1 cut(s)	380
Bsp119I	TTCGAA	2 cut(s)	330, 467
Bsp1286I	GDGCHC	3 cut(s)	31, 561, 1669
Bsp1407I	TGTACA	2 cut(s)	1498, 1813
Bsp143I	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
BspACI	CCGC	6 cut(s)	138, 400, 570, 582, 598, 1525
BspANI	GGCC	7 cut(s)	581, 597, 668, 780, 1494, 1857, 2085
BspCNI	CTCAG	5 cut(s)	172, 789, 1081, 1149, 1184
BspDI	ATCGAT	1 cut(s)	267
BspFNI	CGCG	4 cut(s)	584, 699, 2136, 2138
BspLI	GGNNCC	1 cut(s)	1443
BspMAI	CTGCAG	2 cut(s)	371, 1723
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	3 cut(s)	1681, 1736, 1812
BspQI	GCTCTTC	1 cut(s)	1941
BspT104I	TTCGAA	2 cut(s)	330, 467
BspT107I	GGYRCC	1 cut(s)	1441
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	607, 1368
BsrFI	RCCGGY	1 cut(s)	521
BsrGI	TGTACA	2 cut(s)	1498, 1813
BsrI	ACTGG	2 cut(s)	781, 1600
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	5 cut(s)	81, 379, 1182, 1858, 1925
BssMI	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
BssNAI	GTATAC	1 cut(s)	873
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	2 cut(s)	1858, 1925
Bst1107I	GTATAC	1 cut(s)	873
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	6 cut(s)	404, 614, 1184, 1551, 1647, 2103
Bst4CI	ACNGT	3 cut(s)	659, 1082, 1773
Bst6I	CTCTTC	3 cut(s)	1129, 1941, 2025
BstAFI	CTTAAG	1 cut(s)	38
BstAUI	TGTACA	2 cut(s)	1498, 1813
BstBI	TTCGAA	2 cut(s)	330, 467
BstC8I	GCNNGC	8 cut(s)	337, 400, 568, 1177, 1312, 1431, 1480, 2070
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	8 cut(s)	516, 646, 1218, 1222, 1514, 1921, 2212, 2239
BstFNI	CGCG	4 cut(s)	584, 699, 2136, 2138
BstHHI	GCGC	6 cut(s)	310, 586, 701, 772, 1181, 2138
BstKTI	GATC	9 cut(s)	111, 1010, 1122, 1582, 1689, 1744, 1807, 1851, 1881
BstMAI	GTCTC	8 cut(s)	124, 162, 512, 665, 1527, 1905, 2027, 2036
BstMBI	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
BstMWI	GCNNNNNNNGC	4 cut(s)	674, 977, 1094, 1172
BstNI	CCWGG	6 cut(s)	404, 614, 1184, 1551, 1647, 2103
BstNSI	RCATGY	3 cut(s)	1179, 1482, 1820
BstSCI	CCNGG	7 cut(s)	402, 600, 612, 1182, 1549, 1645, 2101
BstSFI	CTRYAG	3 cut(s)	367, 1098, 1719
BstUI	CGCG	4 cut(s)	584, 699, 2136, 2138
BstV1I	GCAGC	5 cut(s)	351, 381, 1438, 1705, 2168
BstX2I	RGATCY	2 cut(s)	1686, 1741
BstYI	RGATCY	2 cut(s)	1686, 1741
BstZ17I	GTATAC	1 cut(s)	873
Bsu15I	ATCGAT	1 cut(s)	267
BsuRI	GGCC	7 cut(s)	581, 597, 668, 780, 1494, 1857, 2085
BsuTUI	ATCGAT	1 cut(s)	267
BtgI	CCRYGG	1 cut(s)	81
BtrI	CACGTC	1 cut(s)	1592
BtsCI	GGATG	8 cut(s)	516, 646, 1218, 1222, 1514, 1921, 2212, 2239
BtsIMutI	CAGTG	1 cut(s)	788
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	8 cut(s)	337, 400, 568, 1177, 1312, 1431, 1480, 2070
CfoI	GCGC	6 cut(s)	310, 586, 701, 772, 1181, 2138
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	2 cut(s)	595, 1855
ClaI	ATCGAT	1 cut(s)	267
CsiI	ACCWGGT	1 cut(s)	1645
Csp6I	GTAC	7 cut(s)	320, 385, 1442, 1499, 1814, 1826, 2094
CspAI	ACCGGT	1 cut(s)	521
CspCI	CAANNNNNGTGG	2 cut(s)	1350, 1385
CviQI	GTAC	7 cut(s)	320, 385, 1442, 1499, 1814, 1826, 2094
DpnI	GATC	9 cut(s)	110, 1009, 1121, 1581, 1688, 1743, 1806, 1850, 1880
DpnII	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
EaeI	YGGCCR	2 cut(s)	579, 778
Eam1104I	CTCTTC	3 cut(s)	1129, 1941, 2025
EarI	CTCTTC	3 cut(s)	1129, 1941, 2025
Eco130I	CCWWGG	2 cut(s)	1858, 1925
Eco147I	AGGCCT	1 cut(s)	1494
Eco24I	GRGCYC	1 cut(s)	31
Eco31I	GGTCTC	1 cut(s)	512
Eco57I	CTGAAG	2 cut(s)	1773, 1877
Eco88I	CYCGRG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	1855
EcoRII	CCWGG	6 cut(s)	402, 612, 1182, 1549, 1645, 2101
EcoT14I	CCWWGG	2 cut(s)	1858, 1925
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	1858, 1925
FalI	AAGNNNNNCTT	2 cut(s)	275, 307
FaqI	GGGAC	3 cut(s)	906, 945, 1602
FauI	CCCGC	2 cut(s)	145, 407
FauNDI	CATATG	2 cut(s)	61, 1747
FbaI	TGATCA	2 cut(s)	108, 1848
FblI	GTMKAC	1 cut(s)	872
Fnu4HI	GCNGC	7 cut(s)	340, 370, 582, 598, 1427, 1719, 2157
FokI	GGATG	8 cut(s)	523, 653, 1225, 1229, 1521, 1908, 2219, 2246
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	7 cut(s)	340, 370, 582, 598, 1427, 1719, 2157
FspBI	CTAG	5 cut(s)	209, 702, 1128, 1202, 1961
FspI	TGCGCA	1 cut(s)	771
GlaI	GCGC	6 cut(s)	309, 585, 700, 771, 1180, 2137
GluI	GCNGC	7 cut(s)	340, 370, 582, 598, 1427, 1719, 2157
GsaI	CCCAGC	2 cut(s)	725, 1437
GsuI	CTGGAG	1 cut(s)	1375
HaeIII	GGCC	7 cut(s)	581, 597, 668, 780, 1494, 1857, 2085
HapII	CCGG	3 cut(s)	522, 601, 836
HhaI	GCGC	6 cut(s)	310, 586, 701, 772, 1181, 2138
Hin6I	GCGC	6 cut(s)	308, 584, 699, 770, 1179, 2136
HinP1I	GCGC	6 cut(s)	308, 584, 699, 770, 1179, 2136
HincII	GTYRAC	3 cut(s)	364, 1261, 2185
HindII	GTYRAC	3 cut(s)	364, 1261, 2185
HindIII	AAGCTT	3 cut(s)	564, 1727, 2177
HpaI	GTTAAC	1 cut(s)	1261
HpaII	CCGG	3 cut(s)	522, 601, 836
HphI	GGTGA	7 cut(s)	23, 97, 163, 223, 343, 737, 1006
Hpy166II	GTNNAC	6 cut(s)	364, 747, 873, 1261, 1414, 2185
Hpy188I	TCNGA	6 cut(s)	108, 149, 244, 640, 798, 1158
Hpy188III	TCNNGA	6 cut(s)	112, 533, 1128, 1196, 1354, 1961
Hpy8I	GTNNAC	6 cut(s)	364, 747, 873, 1261, 1414, 2185
HpyAV	CCTTC	4 cut(s)	143, 184, 464, 1969
HpyCH4III	ACNGT	3 cut(s)	659, 1082, 1773
HpyCH4IV	ACGT	1 cut(s)	1591
HpyF10VI	GCNNNNNNNGC	4 cut(s)	674, 977, 1094, 1172
HpySE526I	ACGT	1 cut(s)	1591
HspAI	GCGC	6 cut(s)	308, 584, 699, 770, 1179, 2136
KpnI	GGTACC	1 cut(s)	1445
Ksp22I	TGATCA	2 cut(s)	108, 1848
KspAI	GTTAAC	1 cut(s)	1261
Kzo9I	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
LguI	GCTCTTC	1 cut(s)	1941
LmnI	GCTCC	4 cut(s)	197, 1513, 1664, 2104
Lsp1109I	GCAGC	5 cut(s)	351, 381, 1438, 1705, 2168
LweI	GCATC	4 cut(s)	478, 501, 1623, 2197
MabI	ACCWGGT	1 cut(s)	1645
MaeI	CTAG	5 cut(s)	209, 702, 1128, 1202, 1961
MaeII	ACGT	1 cut(s)	1591
MaeIII	GTNAC	5 cut(s)	312, 1082, 1453, 1699, 1917
MalI	GATC	9 cut(s)	110, 1009, 1121, 1581, 1688, 1743, 1806, 1850, 1880
MboI	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
MboII	GAAGA	4 cut(s)	1116, 1574, 1958, 2042
MfeI	CAATTG	2 cut(s)	1638, 2073
MflI	RGATCY	2 cut(s)	1686, 1741
MhlI	GDGCHC	3 cut(s)	31, 561, 1669
MlsI	TGGCCA	1 cut(s)	780
MluNI	TGGCCA	1 cut(s)	780
MlyI	GAGTC	7 cut(s)	97, 126, 254, 538, 644, 1461, 1966
MmeI	TCCRAC	2 cut(s)	618, 1584
Mox20I	TGGCCA	1 cut(s)	780
MroXI	GAANNNNTTC	2 cut(s)	434, 1144
MscI	TGGCCA	1 cut(s)	780
MseI	TTAA	4 cut(s)	39, 347, 924, 1260
MslI	CAYNNNNRTG	2 cut(s)	971, 1695
Msp20I	TGGCCA	1 cut(s)	780
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	3 cut(s)	522, 601, 836
MspR9I	CCNGG	7 cut(s)	404, 602, 614, 1184, 1551, 1647, 2103
MunI	CAATTG	2 cut(s)	1638, 2073
Mva1269I	GAATGC	2 cut(s)	451, 1057
MvaI	CCWGG	6 cut(s)	404, 614, 1184, 1551, 1647, 2103
MvnI	CGCG	4 cut(s)	584, 699, 2136, 2138
MwoI	GCNNNNNNNGC	4 cut(s)	674, 977, 1094, 1172
NciI	CCSGG	1 cut(s)	602
NdeI	CATATG	2 cut(s)	61, 1747
NdeII	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
NlaIV	GGNNCC	1 cut(s)	1443
NmuCI	GTSAC	3 cut(s)	1082, 1699, 1917
NsbI	TGCGCA	1 cut(s)	771
NspI	RCATGY	3 cut(s)	1179, 1482, 1820
NspV	TTCGAA	2 cut(s)	330, 467
PaeI	GCATGC	2 cut(s)	1179, 1482
PaqCI	CACCTGC	1 cut(s)	982
PceI	AGGCCT	1 cut(s)	1494
PciI	ACATGT	1 cut(s)	1816
PciSI	GCTCTTC	1 cut(s)	1941
PcsI	WCGNNNNNNNCGW	1 cut(s)	749
PctI	GAATGC	2 cut(s)	451, 1057
PdmI	GAANNNNTTC	2 cut(s)	434, 1144
PfeI	GAWTC	4 cut(s)	239, 295, 1145, 2003
PflFI	GACNNNGTC	1 cut(s)	953
PflMI	CCANNNNNTGG	1 cut(s)	787
PfoI	TCCNGGA	1 cut(s)	2101
PinAI	ACCGGT	1 cut(s)	521
PkrI	GCNGC	7 cut(s)	341, 371, 583, 599, 1428, 1720, 2158
PleI	GAGTC	7 cut(s)	97, 125, 253, 537, 643, 1461, 1965
PpsI	GAGTC	7 cut(s)	97, 125, 253, 537, 643, 1461, 1965
PscI	ACATGT	1 cut(s)	1816
PsiI	TTATAA	1 cut(s)	1625
Psp6I	CCWGG	6 cut(s)	402, 612, 1182, 1549, 1645, 2101
PspFI	CCCAGC	2 cut(s)	721, 1433
PspGI	CCWGG	6 cut(s)	402, 612, 1182, 1549, 1645, 2101
PspN4I	GGNNCC	1 cut(s)	1443
PspPI	GGNCC	2 cut(s)	595, 1855
PstI	CTGCAG	2 cut(s)	371, 1723
PsuI	RGATCY	2 cut(s)	1686, 1741
PsyI	GACNNNGTC	1 cut(s)	953
RsaI	GTAC	7 cut(s)	321, 386, 1443, 1500, 1815, 1827, 2095
RsaNI	GTAC	7 cut(s)	320, 385, 1442, 1499, 1814, 1826, 2094
RseI	CAYNNNNRTG	2 cut(s)	971, 1695
SapI	GCTCTTC	1 cut(s)	1941
SaqAI	TTAA	4 cut(s)	39, 347, 924, 1260
SatI	GCNGC	7 cut(s)	340, 370, 582, 598, 1427, 1719, 2157
Sau3AI	GATC	9 cut(s)	108, 1007, 1119, 1579, 1686, 1741, 1804, 1848, 1878
Sau96I	GGNCC	2 cut(s)	595, 1855
ScaI	AGTACT	1 cut(s)	1827
SchI	GAGTC	7 cut(s)	97, 126, 254, 538, 644, 1461, 1966
ScrFI	CCNGG	7 cut(s)	404, 602, 614, 1184, 1551, 1647, 2103
SduI	GDGCHC	3 cut(s)	31, 561, 1669
SexAI	ACCWGGT	1 cut(s)	1645
SfaNI	GCATC	4 cut(s)	478, 501, 1623, 2197
SfcI	CTRYAG	3 cut(s)	367, 1098, 1719
SfuI	TTCGAA	2 cut(s)	330, 467
SmiMI	CAYNNNNRTG	2 cut(s)	971, 1695
SmlI	CTYRAG	2 cut(s)	38, 1952
SmoI	CTYRAG	2 cut(s)	38, 1952
SphI	GCATGC	2 cut(s)	1179, 1482
SseBI	AGGCCT	1 cut(s)	1494
SsiI	CCGC	6 cut(s)	138, 400, 570, 582, 598, 1525
SspMI	CTAG	5 cut(s)	209, 702, 1128, 1202, 1961
StuI	AGGCCT	1 cut(s)	1494
StyD4I	CCNGG	7 cut(s)	402, 600, 612, 1182, 1549, 1645, 2101
StyI	CCWWGG	2 cut(s)	1858, 1925
TaaI	ACNGT	3 cut(s)	659, 1082, 1773
TaiI	ACGT	1 cut(s)	1594
TaqI	TCGA	8 cut(s)	267, 330, 411, 467, 622, 752, 1390, 1693
TatI	WGTACW	5 cut(s)	319, 1498, 1813, 1825, 2093
TauI	GCSGC	2 cut(s)	584, 600
TfiI	GAWTC	4 cut(s)	239, 295, 1145, 2003
Tru1I	TTAA	4 cut(s)	39, 347, 924, 1260
Tru9I	TTAA	4 cut(s)	39, 347, 924, 1260
TscAI	CASTG	1 cut(s)	788
TseFI	GTSAC	3 cut(s)	1082, 1699, 1917
TseI	GCWGC	5 cut(s)	339, 369, 1426, 1718, 2156
Tsp45I	GTSAC	3 cut(s)	1082, 1699, 1917
TspDTI	ATGAA	8 cut(s)	156, 381, 429, 596, 899, 1892, 1959, 2043
TspGWI	ACGGA	3 cut(s)	70, 1100, 1996
TspRI	CASTG	1 cut(s)	788
Tth111I	GACNNNGTC	1 cut(s)	953
Van91I	CCANNNNNTGG	1 cut(s)	787
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	4 cut(s)	68, 143, 416, 938
XbaI	TCTAGA	2 cut(s)	1127, 1960
XceI	RCATGY	3 cut(s)	1179, 1482, 1820
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2231
XmiI	GTMKAC	1 cut(s)	872
XmnI	GAANNNNTTC	2 cut(s)	434, 1144
XspI	CTAG	5 cut(s)	209, 702, 1128, 1202, 1961
ZrmI	AGTACT	1 cut(s)	1827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.