Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007734

Physical Location & Seq

Genomic Coordinates Reverse (-)

13020217 .. 13027414

Gene Structure 7198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG151400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2010 bp

ATGAGCTTCAATTTGATTCCCTCTACTTCTTCGCAACCAGAGCAGAGGAGAAGTGAAGTTCCGATAGAAGAGTGCTGCCTTGTGAATAAGCAATCCACGGCTGCGTCGAGCTCGGATTCCGAAGGAAGTGAGAGTCCTGTTCTTAAGTCCCCCGGGATTGGCAGCAGCCCGGCAGAGGCTTCTCCAGTTAACAAGAGGATTACTGGTCCTATTAGGCGAGCTAAGGGTGGTTGGACTCCACAGGAGGATGAGACATTGAGGAATGCGGTTGCAAAGTTTAAGGGGAAGAACTGGAAAAAAATAGCTCAATATTTTCCTGATAGATCAGAAGTGCAATGTCTGCATCGGTGGCAGAAGGTACTAAATCCAGAACTTGTTAAAGGACCATGGACTCAAGAGGAGGATGATAAAATCGTTGAACTGGTAGCAAAGTATGGACCTACAAAATGGTCGTTAATATCGAAGTCTTTGCCTGGTCGTATAGGAAAACAATGCCGAGAGAGGTGGCACAATCATTTAAATCCAGATATAAAGAGGGAGGCTTGGACGTTGGTGGAGGAATTAGCCCTTATGCATGCCCACCGAATGCATGGGAACAAGTGGGCCGAAATAGCTAAGGCTTTACCTGGAAGGACTGATAATGCAATAAAGAATCATTGGAATAGTTCCTTGAAGAAGAAATTAGATTTCTATTTAGCAACTGGGCAACTTCCCCCGCCACCAAAGAATAGTTACCCAAATGTTCCTAAAGAGACAAATAGATCCATTGCAACTAGAAGATTGCTTGTTGGCTCAGATAAAGGATCAGATTCAACTGCTCGGACATTGCCTGGAAATGCAGACACACGTAAAATAGATGAAGATGGCAAGGATCAATTGCAGTCCTCTGAACCTCTTGACATGGACATGTGTGCTTTCTATTTGGCGACTGGGCAACTTCCACCAGTGCCAAAAAATAGTTTCCCAAATGATGCTAAAGAGACAAATAGATCCACTGCAACTACAAGATTGCTTGTTGATTCGGATAAAGGATCAGATTCAACTGCTCACACAGTGTCTGTAAATGCAGACACATGTAAAATAGATGATAATGGCAAGGATCAGCTGCAGTCCTCCGGCTCTCAGGACATGTGCGGTTCATCAAGTATTCTTCCAGATGAACATGCTGATTCTGAAGTCATAGAGTGTAGGCTAAGATTATCTCTTACGGATCCTAGTTGCAGCAACTCAGAGTCGGTGCCAAAATTCACGAACTTTGCTGTAAACAGCAAGCCTCAGATTGAGAATTCAGGTATTAACAGTGAGCCGAAGTATGAGAATTCTGAATTCAACAGTCAAAAAGTTGAAGACAAAGTTGACAGTGCAACTGTGCCAGTTGGAACTCCTAGCTATGGTTCATTGTACTATGAACCACCACCATTGGACAGCTCTATTCCGTTAGATTCAGGGCTTCCAAACTTGCATTGCTTTCAGCATGACTACAAGTCTAGTCCGAACTCGTCACCTATTAGTTTCTTCACTCCTCCTACTGCAAAGAGCAGTGGTTTATATAATCGAAGCCCTGAATCAATTTTGAAAATAGCTGCTAAGACCTTCCCCAACACTCCTTCTATTTTGCGGAAAAGAAAGTCTGCCCAAGGACATTTACCTCCTAACAAACTTAGGATAGTTGATAGTGAATCAGTGAGGGAAACGCTCATTGTTCCCGAAGAACAGGAAAGAAACAAAAGTAGTGTGGAACTGTCTGGGTCTCGAGATGTAAGTTTGTGTGACAGTCCAACCAGTCAAGGTATTAATACCACTGGTCCTAATGGTAAGGCTTTTAATGCATCTCCTCCATACCGTTTAAGATCCAGGAGGACTGCTGTTTTCAAGTCTGTGGAGAAACAACTTCAGTTTACATGTGAAGAAGAGTATGCTGGTAATTCCAAACCTGTGGGGTTATCTGCAAATGGGGGCACTGCTGTCACCAAAGATTGTTCCCATGCAACAAAGATGGGAGTTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0008285 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010564 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0014070 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032465 GO:0032502 GO:0042127 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046677 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0051302 GO:0051726 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0140110 GO:1901000 GO:1901002 GO:1901181 GO:1901363 GO:1901700 GO:1902584 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000070 GO:2000112 GO:2000113 GO:2001023 GO:2001024 GO:2001038 GO:2001039 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

669

Amino Acids

73.43

Weight (kDa)

8.39

Isoelectric Point (pI)

64.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	75 - 121	4.3e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	78 - 135	3.3e-16	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	127 - 173	6.2e-20	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	130 - 187	2.7e-18	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	179 - 222	3.5e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	182 - 227	2.1e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007734)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02320 AT5G02320 AT5G02320
fragaria_vesca	FvH4_6g13670 FvH4_6g13670 FvH4_6g13670 FvH4_6g13670
malus_domestica	MD04G1129200.v1.1 MD12G1141900.v1.1
prunus_persica	Prupe.6G255400_v2.0.a1 Prupe.6G255400_v2.0.a1
pyrus_communis	pycom04g11740 pycom12g13660
rosa_chinensis	RchiOBHm_Chr3g0466541
rosa_laevigata	RLG00000024564
rosa_multiflora	Rmu_sc0003332.1_g000004
rosa_roxburghii	Rroxscaffold_6G00414390
rosa_rugosa	Rorug03G0082300 Rorug03G0082400
rosa_samantha	Rh3AG129400 Rh3BG150700 Rh3CG150500 Rh3DG151400
rosa_wichuraiana	Rw3G012230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1237
AciI	CCGC	4 cut(s)	266, 716, 1134, 1618
AclWI	GGATC	9 cut(s)	756, 811, 879, 984, 1039, 1107, 1205, 1218, 1845
AcsI	RAATTY	4 cut(s)	1244, 1285, 1318, 1325
AcuI	CTGAAG	2 cut(s)	1194, 1877
AdeI	CACNNNGTG	1 cut(s)	1054
AfaI	GTAC	2 cut(s)	360, 1403
AfiI	CCNNNNNNNGG	3 cut(s)	158, 175, 1391
AflII	CTTAAG	1 cut(s)	143
AflIII	ACRYGT	5 cut(s)	845, 906, 1073, 1128, 1901
AgsI	TTSAA	9 cut(s)	10, 419, 673, 813, 1041, 1330, 1346, 1576, 1873
AhdI	GACNNNNNGTC	1 cut(s)	1483
AjnI	CCWGG	4 cut(s)	472, 625, 829, 1853
AluBI	AGCT	9 cut(s)	6, 111, 221, 305, 614, 1105, 1389, 1428, 1583
AluI	AGCT	9 cut(s)	6, 111, 221, 305, 614, 1105, 1389, 1428, 1583
Alw21I	GWGCWC	1 cut(s)	113
Alw26I	GTCTC	4 cut(s)	245, 746, 974, 1755
AlwI	GGATC	9 cut(s)	756, 811, 879, 984, 1039, 1107, 1205, 1218, 1845
AlwNI	CAGNNNCTG	1 cut(s)	1058
Ama87I	CYCGRG	2 cut(s)	152, 1752
AoxI	GGCC	1 cut(s)	603
ApeKI	GCWGC	7 cut(s)	75, 101, 162, 165, 1105, 1221, 1583
ApoI	RAATTY	4 cut(s)	1244, 1285, 1318, 1325
AseI	ATTAAT	1 cut(s)	1794
AspS9I	GGNCC	5 cut(s)	206, 383, 437, 603, 1805
AsuC2I	CCSGG	3 cut(s)	153, 154, 170
AsuHPI	GGTGA	2 cut(s)	1494, 1960
AvaI	CYCGRG	2 cut(s)	152, 1752
AvaII	GGWCC	4 cut(s)	206, 383, 437, 1805
BaeGI	GKGCMC	1 cut(s)	1961
BamHI	GGATCC	1 cut(s)	1210
BanI	GGYRCC	1 cut(s)	1237
BanII	GRGCYC	1 cut(s)	113
BbsI	GAAGAC	1 cut(s)	1353
Bbv12I	GWGCWC	1 cut(s)	113
BbvI	GCAGC	7 cut(s)	62, 88, 174, 177, 1092, 1233, 1570
BccI	CCATC	2 cut(s)	857, 1990
BceAI	ACGGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	4 cut(s)	474, 627, 831, 1855
BcnI	CCSGG	3 cut(s)	153, 154, 170
BcoDI	GTCTC	4 cut(s)	245, 746, 974, 1755
BfaI	CTAG	5 cut(s)	774, 1215, 1386, 1488, 2008
BfmI	CTRYAG	1 cut(s)	1106
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	7 cut(s)	76, 102, 163, 166, 1106, 1222, 1584
BlsI	GCNGC	7 cut(s)	77, 103, 164, 167, 1107, 1223, 1585
Bme1390I	CCNGG	7 cut(s)	153, 154, 170, 474, 627, 831, 1855
Bme18I	GGWCC	4 cut(s)	206, 383, 437, 1805
BmeRI	GACNNNNNGTC	1 cut(s)	1483
BmeT110I	CYCGRG	2 cut(s)	152, 1752
BmgT120I	GGNCC	5 cut(s)	206, 383, 437, 603, 1805
BmiI	GGNNCC	2 cut(s)	1212, 1239
BmrFI	CCNGG	7 cut(s)	153, 154, 170, 474, 627, 831, 1855
BmrI	ACTGGG	2 cut(s)	711, 939
BmsI	GCATC	3 cut(s)	352, 961, 1838
BmuI	ACTGGG	2 cut(s)	711, 939
BpiI	GAAGAC	1 cut(s)	1353
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	2 cut(s)	222, 615
BpuEI	CTTGAG	1 cut(s)	378
BpuMI	CCSGG	3 cut(s)	153, 154, 170
BsaAI	YACGTR	1 cut(s)	848
BsaI	GGTCTC	1 cut(s)	1755
BsaJI	CCNNGG	5 cut(s)	96, 151, 152, 386, 1636
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 175, 1391
Bse3DI	GCAATG	4 cut(s)	341, 765, 824, 1462
BseBI	CCWGG	4 cut(s)	474, 627, 831, 1855
BseDI	CCNNGG	5 cut(s)	96, 151, 152, 386, 1636
BseGI	GGATG	2 cut(s)	253, 409
BseLI	CCNNNNNNNGG	3 cut(s)	158, 175, 1391
BseMI	GCAATG	4 cut(s)	341, 765, 824, 1462
BseMII	CTCAG	4 cut(s)	807, 1136, 1242, 1289
BseRI	GAGGAG	4 cut(s)	61, 413, 1512, 1824
BseSI	GKGCMC	1 cut(s)	1961
BseXI	GCAGC	7 cut(s)	62, 88, 174, 177, 1092, 1233, 1570
BshFI	GGCC	1 cut(s)	605
BshNI	GGYRCC	1 cut(s)	1237
BsiHKAI	GWGCWC	1 cut(s)	113
BsiHKCI	CYCGRG	2 cut(s)	152, 1752
BsiSI	CCGG	3 cut(s)	153, 170, 1116
BslFI	GGGAC	1 cut(s)	133
BslI	CCNNNNNNNGG	3 cut(s)	158, 175, 1391
BsmAI	GTCTC	4 cut(s)	245, 746, 974, 1755
BsmFI	GGGAC	1 cut(s)	133
BsmI	GAATGC	2 cut(s)	268, 591
BsnI	GGCC	1 cut(s)	605
Bso31I	GGTCTC	1 cut(s)	1755
BsoBI	CYCGRG	2 cut(s)	152, 1752
Bsp1286I	GDGCHC	2 cut(s)	113, 1961
Bsp143I	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
Bsp19I	CCATGG	1 cut(s)	386
BspACI	CCGC	4 cut(s)	266, 716, 1134, 1618
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	4 cut(s)	806, 1135, 1241, 1288
BspLI	GGNNCC	2 cut(s)	1212, 1239
BspMAI	CTGCAG	1 cut(s)	1110
BspPI	GGATC	9 cut(s)	756, 811, 879, 984, 1039, 1107, 1205, 1218, 1845
BspT107I	GGYRCC	1 cut(s)	1237
BspTI	CTTAAG	1 cut(s)	143
BspTNI	GGTCTC	1 cut(s)	1755
BsrDI	GCAATG	4 cut(s)	341, 765, 824, 1462
BssECI	CCNNGG	5 cut(s)	96, 151, 152, 386, 1636
BssMI	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
BssT1I	CCWWGG	2 cut(s)	386, 1636
Bst2UI	CCWGG	4 cut(s)	474, 627, 831, 1855
Bst4CI	ACNGT	8 cut(s)	1054, 1301, 1334, 1361, 1369, 1743, 1775, 1844
Bst6I	CTCTTC	2 cut(s)	63, 1905
BstAFI	CTTAAG	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstBAI	YACGTR	1 cut(s)	848
BstC8I	GCNNGC	3 cut(s)	219, 576, 1271
BstDEI	CTNAG	9 cut(s)	222, 615, 793, 1122, 1193, 1228, 1275, 1587, 1661
BstDSI	CCRYGG	2 cut(s)	96, 386
BstF5I	GGATG	2 cut(s)	253, 409
BstKTI	GATC	9 cut(s)	326, 764, 806, 874, 992, 1034, 1102, 1213, 1853
BstMAI	GTCTC	4 cut(s)	245, 746, 974, 1755
BstMBI	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 340, 349, 611, 1826
BstNI	CCWGG	4 cut(s)	474, 627, 831, 1855
BstNSI	RCATGY	6 cut(s)	578, 910, 1077, 1132, 1166, 1905
BstSCI	CCNGG	7 cut(s)	151, 152, 168, 472, 625, 829, 1853
BstSFI	CTRYAG	1 cut(s)	1106
BstSLI	GKGCMC	1 cut(s)	1961
BstV1I	GCAGC	7 cut(s)	62, 88, 174, 177, 1092, 1233, 1570
BstV2I	GAAGAC	1 cut(s)	1353
BstX2I	RGATCY	4 cut(s)	761, 989, 1210, 1850
BstXI	CCANNNNNNTGG	1 cut(s)	1936
BstYI	RGATCY	4 cut(s)	761, 989, 1210, 1850
BsuRI	GGCC	1 cut(s)	605
BtgI	CCRYGG	2 cut(s)	96, 386
BtsCI	GGATG	2 cut(s)	253, 409
BtsI	GCAGTG	3 cut(s)	993, 1546, 1959
BtsIMutI	CAGTG	9 cut(s)	951, 993, 1059, 1306, 1366, 1546, 1689, 1800, 1959
Cac8I	GCNNGC	3 cut(s)	219, 576, 1271
CaiI	CAGNNNCTG	1 cut(s)	1058
Cfr13I	GGNCC	5 cut(s)	206, 383, 437, 603, 1805
Cfr9I	CCCGGG	1 cut(s)	152
CseI	GACGC	1 cut(s)	93
Csp6I	GTAC	2 cut(s)	359, 1402
CspCI	CAANNNNNGTGG	2 cut(s)	1401, 1436
CviQI	GTAC	2 cut(s)	359, 1402
DdeI	CTNAG	9 cut(s)	222, 615, 793, 1122, 1193, 1228, 1275, 1587, 1661
DpnI	GATC	9 cut(s)	325, 763, 805, 873, 991, 1033, 1101, 1212, 1852
DpnII	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
DraI	TTTAAA	1 cut(s)	519
DraIII	CACNNNGTG	1 cut(s)	1054
DriI	GACNNNNNGTC	1 cut(s)	1483
Eam1104I	CTCTTC	2 cut(s)	63, 1905
Eam1105I	GACNNNNNGTC	1 cut(s)	1483
EarI	CTCTTC	2 cut(s)	63, 1905
Ecl136II	GAGCTC	1 cut(s)	111
Eco130I	CCWWGG	2 cut(s)	386, 1636
Eco24I	GRGCYC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	1755
Eco47I	GGWCC	4 cut(s)	206, 383, 437, 1805
Eco53kI	GAGCTC	1 cut(s)	111
Eco57I	CTGAAG	2 cut(s)	1194, 1877
Eco88I	CYCGRG	2 cut(s)	152, 1752
EcoICRI	GAGCTC	1 cut(s)	111
EcoRI	GAATTC	3 cut(s)	1285, 1318, 1325
EcoRII	CCWGG	4 cut(s)	472, 625, 829, 1853
EcoT14I	CCWWGG	2 cut(s)	386, 1636
EcoT22I	ATGCAT	3 cut(s)	576, 591, 1831
EcoT38I	GRGCYC	1 cut(s)	113
ErhI	CCWWGG	2 cut(s)	386, 1636
FaqI	GGGAC	1 cut(s)	133
FauI	CCCGC	1 cut(s)	723
Fnu4HI	GCNGC	7 cut(s)	76, 102, 163, 166, 1106, 1222, 1584
FokI	GGATG	2 cut(s)	260, 416
FriOI	GRGCYC	1 cut(s)	113
Fsp4HI	GCNGC	7 cut(s)	76, 102, 163, 166, 1106, 1222, 1584
FspBI	CTAG	5 cut(s)	774, 1215, 1386, 1488, 2008
GluI	GCNGC	7 cut(s)	76, 102, 163, 166, 1106, 1222, 1584
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	3 cut(s)	153, 170, 1116
HgaI	GACGC	1 cut(s)	93
HincII	GTYRAC	2 cut(s)	190, 1357
HindII	GTYRAC	2 cut(s)	190, 1357
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	3 cut(s)	153, 170, 1116
HphI	GGTGA	2 cut(s)	1494, 1960
Hpy166II	GTNNAC	4 cut(s)	190, 1264, 1357, 1899
Hpy8I	GTNNAC	4 cut(s)	190, 1264, 1357, 1899
Hpy99I	CGWCG	1 cut(s)	109
HpyAV	CCTTC	5 cut(s)	116, 349, 624, 1603, 1617
HpyCH4III	ACNGT	8 cut(s)	1054, 1301, 1334, 1361, 1369, 1743, 1775, 1844
HpyCH4IV	ACGT	2 cut(s)	548, 847
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 340, 349, 611, 1826
HpyF3I	CTNAG	9 cut(s)	222, 615, 793, 1122, 1193, 1228, 1275, 1587, 1661
HpySE526I	ACGT	2 cut(s)	548, 847
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
Lsp1109I	GCAGC	7 cut(s)	62, 88, 174, 177, 1092, 1233, 1570
LweI	GCATC	3 cut(s)	352, 961, 1838
MaeI	CTAG	5 cut(s)	774, 1215, 1386, 1488, 2008
MaeII	ACGT	2 cut(s)	548, 847
MaeIII	GTNAC	5 cut(s)	731, 1500, 1769, 1966, 2002
MalI	GATC	9 cut(s)	325, 763, 805, 873, 991, 1033, 1101, 1212, 1852
MboI	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
MfeI	CAATTG	1 cut(s)	875
MflI	RGATCY	4 cut(s)	761, 989, 1210, 1850
MhlI	GDGCHC	2 cut(s)	113, 1961
MlyI	GAGTC	4 cut(s)	142, 229, 385, 1241
MmeI	TCCRAC	3 cut(s)	212, 1357, 1802
Mph1103I	ATGCAT	3 cut(s)	576, 591, 1831
MslI	CAYNNNNRTG	1 cut(s)	905
MspA1I	CMGCKG	1 cut(s)	1105
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	3 cut(s)	153, 170, 1116
MspR9I	CCNGG	7 cut(s)	153, 154, 170, 474, 627, 831, 1855
MunI	CAATTG	1 cut(s)	875
Mva1269I	GAATGC	2 cut(s)	268, 591
MvaI	CCWGG	4 cut(s)	474, 627, 831, 1855
MwoI	GCNNNNNNNGC	5 cut(s)	40, 340, 349, 611, 1826
NciI	CCSGG	3 cut(s)	153, 154, 170
NcoI	CCATGG	1 cut(s)	386
NdeII	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
NlaIV	GGNNCC	2 cut(s)	1212, 1239
NmeAIII	GCCGAG	1 cut(s)	521
NmuCI	GTSAC	3 cut(s)	1500, 1769, 1966
NsiI	ATGCAT	3 cut(s)	576, 591, 1831
NspI	RCATGY	6 cut(s)	578, 910, 1077, 1132, 1166, 1905
PaeI	GCATGC	1 cut(s)	578
PaeR7I	CTCGAG	1 cut(s)	1752
PciI	ACATGT	4 cut(s)	906, 1073, 1128, 1901
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 458
PctI	GAATGC	2 cut(s)	268, 591
PfoI	TCCNGGA	1 cut(s)	1853
PkrI	GCNGC	7 cut(s)	77, 103, 164, 167, 1107, 1223, 1585
PleI	GAGTC	4 cut(s)	141, 229, 385, 1240
PpsI	GAGTC	4 cut(s)	141, 229, 385, 1240
Ppu21I	YACGTR	1 cut(s)	848
PscI	ACATGT	4 cut(s)	906, 1073, 1128, 1901
PshBI	ATTAAT	1 cut(s)	1794
Psp124BI	GAGCTC	1 cut(s)	113
Psp6I	CCWGG	4 cut(s)	472, 625, 829, 1853
PspGI	CCWGG	4 cut(s)	472, 625, 829, 1853
PspN4I	GGNNCC	2 cut(s)	1212, 1239
PspPI	GGNCC	5 cut(s)	206, 383, 437, 603, 1805
PstI	CTGCAG	1 cut(s)	1110
PstNI	CAGNNNCTG	1 cut(s)	1058
PsuI	RGATCY	4 cut(s)	761, 989, 1210, 1850
PvuII	CAGCTG	1 cut(s)	1105
RsaI	GTAC	2 cut(s)	360, 1403
RsaNI	GTAC	2 cut(s)	359, 1402
RseI	CAYNNNNRTG	1 cut(s)	905
SacI	GAGCTC	1 cut(s)	113
SatI	GCNGC	7 cut(s)	76, 102, 163, 166, 1106, 1222, 1584
Sau3AI	GATC	9 cut(s)	323, 761, 803, 871, 989, 1031, 1099, 1210, 1850
Sau96I	GGNCC	5 cut(s)	206, 383, 437, 603, 1805
SchI	GAGTC	4 cut(s)	142, 229, 385, 1241
ScrFI	CCNGG	7 cut(s)	153, 154, 170, 474, 627, 831, 1855
SduI	GDGCHC	2 cut(s)	113, 1961
SfaNI	GCATC	3 cut(s)	352, 961, 1838
SfcI	CTRYAG	1 cut(s)	1106
Sfr274I	CTCGAG	1 cut(s)	1752
SinI	GGWCC	4 cut(s)	206, 383, 437, 1805
SlaI	CTCGAG	1 cut(s)	1752
SmaI	CCCGGG	1 cut(s)	154
SmiI	ATTTAAAT	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	905
SmlI	CTYRAG	3 cut(s)	143, 393, 1752
SmoI	CTYRAG	3 cut(s)	143, 393, 1752
SphI	GCATGC	1 cut(s)	578
SsiI	CCGC	4 cut(s)	266, 716, 1134, 1618
SspI	AATATT	1 cut(s)	311
SspMI	CTAG	5 cut(s)	774, 1215, 1386, 1488, 2008
SstI	GAGCTC	1 cut(s)	113
StyD4I	CCNGG	7 cut(s)	151, 152, 168, 472, 625, 829, 1853
StyI	CCWWGG	2 cut(s)	386, 1636
SwaI	ATTTAAAT	1 cut(s)	519
TaaI	ACNGT	8 cut(s)	1054, 1301, 1334, 1361, 1369, 1743, 1775, 1844
TaiI	ACGT	2 cut(s)	551, 850
TaqI	TCGA	4 cut(s)	107, 461, 1555, 1753
TatI	WGTACW	1 cut(s)	1401
TscAI	CASTG	9 cut(s)	951, 1000, 1059, 1306, 1366, 1546, 1689, 1807, 1966
TseFI	GTSAC	3 cut(s)	1500, 1769, 1966
TseI	GCWGC	7 cut(s)	75, 101, 162, 165, 1105, 1221, 1583
Tsp45I	GTSAC	3 cut(s)	1500, 1769, 1966
TspDTI	ATGAA	5 cut(s)	873, 1128, 1173, 1386, 1422
TspGWI	ACGGA	2 cut(s)	1223, 1425
TspMI	CCCGGG	1 cut(s)	152
TspRI	CASTG	9 cut(s)	951, 1000, 1059, 1306, 1366, 1546, 1689, 1807, 1966
Vha464I	CTTAAG	1 cut(s)	143
VpaK11BI	GGWCC	4 cut(s)	206, 383, 437, 1805
VspI	ATTAAT	1 cut(s)	1794
XapI	RAATTY	4 cut(s)	1244, 1285, 1318, 1325
XceI	RCATGY	6 cut(s)	578, 910, 1077, 1132, 1166, 1905
XcmI	CCANNNNNNNNNTGG	1 cut(s)	587
XhoI	CTCGAG	1 cut(s)	1752
XmaI	CCCGGG	1 cut(s)	152
XspI	CTAG	5 cut(s)	774, 1215, 1386, 1488, 2008
Zsp2I	ATGCAT	3 cut(s)	576, 591, 1831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.