Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004979

Physical Location & Seq

Genomic Coordinates Reverse (-)

516985 .. 519850

Gene Structure 2866 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1530 bp

ATGGGGAAATTAGCCGTTGCAGCGATCACGAGCTTGTGGGTGATTCCGATGTCGATTATCGTCAATCACATTGTTCCTGAACCCTACATGGACGAGATATTTCATGTGCCTCAAGCTCAGCAATACTGCAATGGGAATTTTAGGAGCTGGGATCCAATGATCACTACCCCACCTGGATTGTACTATCTTTCACTAGCACATGTTGCTAGTTTGTTTCCAGGAATGTTGTTGATGGAAAATACATCTCAGTCCTTTTCAGAAGCTTGTTCGACATCTGTCCTGCGGTCTACAAATGCTGTTTCTGCAGTATTGTGTGGTGTTTTAGTGTATGAGATAATAAGATTCTTGGGGCCGAATCTTAGTGATAGAAAAGCGACTTTTATGGCGTTAGTCATGTCGCTTTACCCTCTCCATTGGTTCTTCACTTTCCTATACTATACAGATGTTGCGTCCCTAACCGCAGTTCTTGCCATGTACCTTACTTGTTTGAAAAGACGATATGTGCTCAGTGCATTGTTTGGCACTTTAGCAGTTTTTATCCGACAAACAAATGTAGTCTGGATGCTTTTCGTTGCTTGCTCAGGTATTCTAGACTTCACCCTTGACTCGTCTAAGCAAAAAGGAAAACAAGAAGTAAATCAAGAACTGCATCAGTCTAGTAATAAGAAAGGAGCAACTTTGAGATCAAATCTTAGAAAAAGAAAATCTGATATCAGCTCAGACACTTCAGACCCTTTTAACCACGGTCAAACTGTTCCTTCAACAGAGGATACTTCAGACTTAGTGTATGATATTTATACTGTAATCTCAACATCTTGGAATCTGAAGTGGAGGATTTTGATCAAGTTTAGCCCTTTTATCTTTGTTGTGGTGGCGTTTGGTATTTTTATCCTCTGGAACGGGGGTATAGTCCTCGGTGCAAAAGAGGCTCATGTAGTTTCACTGCATTTTGCGCAGATAATGTATTTTAGTCTCGTTTCTGCTCTTTTCACTGCTCCCCTACACTTCTCAGTAAATCAACTGAGACATCAGTTCCATCAGCTCCATAGAAATTGGTCATTAAGCCTTATACTAACTCTTGTGGCTCTAGTAGCCGGATTTGTCTCTGTACACTTTTTCAGCTTGGCTCATCCATATCTTCTTGCTGATAATCGCCATTATCCTTTCTACCTATGGAGAAAAATTATCAATGCGCATTGGTTAATGAAGTACATATTAGTCCCGGTATACGTCTATTCCTGGTTCTCAATCCTAACTTTATTAGCGAAAACTCGAAGGCAGACCTGGATATTGGTCTATTTCTTAGCTACATGCGGTGTTCTTGTTCCTACTCCATTGATCGAGTTCAGATATTACACCATTCCGTTTTACCTCTTCATGCTTCACTCCTGTGTCAGAAGCAGCAGCTTCGCCACTTGGCTTCTCATCGGAACGATTTTTGTCTCTATCAATGTGTTTACAATGGCAATGTTCTTGTTTAGACCGTTTAAGTGGAGCCATGAAGATGGTGTCCAGAGGTTTATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070085 GO:0071704 GO:0098827 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DIE2_ALG10

Protein Analysis

509

Amino Acids

58.44

Weight (kDa)

9.34

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIE2_ALG10	PF04922	25 - 461	3.8e-133	DIE2/ALG10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02410
fragaria_vesca	FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910
malus_domestica	MD04G1127500.v1.1 MD12G1140900.v1.1
prunus_persica	Prupe.6G254200_v2.0.a1 Prupe.6G254200_v2.0.a1
pyrus_communis	pycom04g11440 pycom126g00050 pycom12g13580
rosa_chinensis	RchiOBHm_Chr3g0466751
rosa_laevigata	RLG00000024556
rosa_multiflora	Rmu_sc0026659.1_g000002 Rmu_sc0035686.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414200
rosa_rugosa	Rorug03G0083600 Rorug03G0083700
rosa_samantha	Rh3AG130700 Rh3BG151700 Rh3CG151600 Rh3DG152400
rosa_wichuraiana	Rw3G012330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	954, 1194
AccI	GTMKAC	2 cut(s)	287, 1227
AciI	CCGC	3 cut(s)	283, 459, 1314
AclWI	GGATC	2 cut(s)	146, 159
AcsI	RAATTY	1 cut(s)	136
AcuI	CTGAAG	3 cut(s)	711, 759, 845
AfaI	GTAC	4 cut(s)	182, 476, 1110, 1211
AflIII	ACRYGT	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	490, 762
AjnI	CCWGG	4 cut(s)	172, 217, 1238, 1283
AleI	CACNNNNGTG	1 cut(s)	1389
AluBI	AGCT	9 cut(s)	33, 116, 147, 263, 717, 1042, 1122, 1307, 1407
AluI	AGCT	9 cut(s)	33, 116, 147, 263, 717, 1042, 1122, 1307, 1407
Alw21I	GWGCWC	1 cut(s)	507
Alw26I	GTCTC	4 cut(s)	977, 1018, 1108, 1447
AlwI	GGATC	2 cut(s)	146, 159
AoxI	GGCC	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	20, 1401, 1404
ApoI	RAATTY	1 cut(s)	136
AspLEI	GCGC	2 cut(s)	955, 1195
AspS9I	GGNCC	1 cut(s)	350
AsuC2I	CCSGG	1 cut(s)	1223
AsuHPI	GGTGA	2 cut(s)	52, 589
BamHI	GGATCC	1 cut(s)	151
BauI	CACGAG	1 cut(s)	28
Bbv12I	GWGCWC	1 cut(s)	507
BbvI	GCAGC	3 cut(s)	32, 1413, 1416
BccI	CCATC	3 cut(s)	226, 1044, 1499
BcgI	CGANNNNNNTGC	2 cut(s)	1390, 1424
BciT130I	CCWGG	4 cut(s)	174, 219, 1240, 1285
BciVI	GTATCC	1 cut(s)	763
BclI	TGATCA	2 cut(s)	159, 840
BcnI	CCSGG	1 cut(s)	1223
BcoDI	GTCTC	4 cut(s)	977, 1018, 1108, 1447
BfaI	CTAG	5 cut(s)	194, 207, 590, 657, 1088
BfmI	CTRYAG	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	763
BisI	GCNGC	3 cut(s)	21, 1402, 1405
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	3 cut(s)	22, 1403, 1406
Bme1390I	CCNGG	5 cut(s)	174, 219, 1223, 1240, 1285
BmgT120I	GGNCC	1 cut(s)	350
BmiI	GGNNCC	3 cut(s)	153, 351, 1496
BmrFI	CCNGG	5 cut(s)	174, 219, 1223, 1240, 1285
BmsI	GCATC	2 cut(s)	552, 658
BoxI	GACNNNNGTC	1 cut(s)	275
Bpu10I	CCTNAGC	1 cut(s)	580
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	96
BpuMI	CCSGG	1 cut(s)	1223
BsaBI	GATNNNNATC	1 cut(s)	839
BsaJI	CCNNGG	2 cut(s)	742, 913
Bse3DI	GCAATG	2 cut(s)	136, 1473
Bse8I	GATNNNNATC	1 cut(s)	839
BseBI	CCWGG	4 cut(s)	174, 219, 1240, 1285
BseDI	CCNNGG	2 cut(s)	742, 913
BseGI	GGATG	2 cut(s)	567, 1129
BseJI	GATNNNNATC	1 cut(s)	839
BseMI	GCAATG	2 cut(s)	136, 1473
BseMII	CTCAG	7 cut(s)	131, 260, 520, 594, 732, 1013, 1023
BseXI	GCAGC	3 cut(s)	32, 1413, 1416
BseYI	CCCAGC	1 cut(s)	147
BshFI	GGCC	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	1095, 1223
BslFI	GGGAC	2 cut(s)	436, 1205
BsmAI	GTCTC	4 cut(s)	977, 1018, 1108, 1447
BsmFI	GGGAC	2 cut(s)	436, 1205
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp1407I	TGTACA	1 cut(s)	1108
Bsp143I	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
Bsp1720I	GCTNAGC	1 cut(s)	117
BspACI	CCGC	3 cut(s)	283, 459, 1314
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	7 cut(s)	130, 259, 519, 593, 731, 1014, 1022
BspLI	GGNNCC	3 cut(s)	153, 351, 1496
BspMAI	CTGCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	146, 159
BsrDI	GCAATG	2 cut(s)	136, 1473
BsrGI	TGTACA	1 cut(s)	1108
BssECI	CCNNGG	2 cut(s)	742, 913
BssMI	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
BssNAI	GTATAC	1 cut(s)	1228
BssSI	CACGAG	1 cut(s)	28
Bst1107I	GTATAC	1 cut(s)	1228
Bst2BI	CACGAG	1 cut(s)	28
Bst2UI	CCWGG	4 cut(s)	174, 219, 1240, 1285
Bst4CI	ACNGT	4 cut(s)	746, 754, 802, 1485
Bst6I	CTCTTC	1 cut(s)	1379
BstAPI	GCANNNNNTGC	2 cut(s)	203, 467
BstAUI	TGTACA	1 cut(s)	1108
BstC8I	GCNNGC	1 cut(s)	577
BstDSI	CCRYGG	1 cut(s)	742
BstF5I	GGATG	2 cut(s)	567, 1129
BstHHI	GCGC	2 cut(s)	955, 1195
BstKTI	GATC	6 cut(s)	27, 154, 162, 686, 843, 1341
BstMAI	GTCTC	4 cut(s)	977, 1018, 1108, 1447
BstMBI	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
BstMWI	GCNNNNNNNGC	7 cut(s)	20, 203, 302, 467, 926, 952, 1091
BstNI	CCWGG	4 cut(s)	174, 219, 1240, 1285
BstNSI	RCATGY	2 cut(s)	203, 1314
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	5 cut(s)	172, 217, 1221, 1238, 1283
BstSFI	CTRYAG	1 cut(s)	303
BstV1I	GCAGC	3 cut(s)	32, 1413, 1416
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	1505
BstYI	RGATCY	1 cut(s)	151
BstZ17I	GTATAC	1 cut(s)	1228
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	742
BtsCI	GGATG	2 cut(s)	567, 1129
BtsI	GCAGTG	2 cut(s)	941, 990
BtsIMutI	CAGTG	3 cut(s)	514, 941, 990
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	2 cut(s)	955, 1195
Cfr13I	GGNCC	1 cut(s)	350
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	4 cut(s)	181, 475, 1109, 1210
CspCI	CAANNNNNGTGG	2 cut(s)	159, 194
CviAII	CATG	9 cut(s)	88, 104, 200, 394, 472, 932, 1311, 1378, 1499
CviQI	GTAC	4 cut(s)	181, 475, 1109, 1210
DpnI	GATC	6 cut(s)	26, 153, 161, 685, 842, 1340
DpnII	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
Eam1104I	CTCTTC	1 cut(s)	1379
EarI	CTCTTC	1 cut(s)	1379
Eco32I	GATATC	1 cut(s)	712
Eco57I	CTGAAG	3 cut(s)	711, 759, 845
EcoRII	CCWGG	4 cut(s)	172, 217, 1238, 1283
EcoRV	GATATC	1 cut(s)	712
FaeI	CATG	9 cut(s)	91, 107, 203, 397, 475, 935, 1314, 1381, 1502
FaqI	GGGAC	2 cut(s)	436, 1205
FatI	CATG	9 cut(s)	87, 103, 199, 393, 471, 931, 1310, 1377, 1498
FbaI	TGATCA	2 cut(s)	159, 840
FblI	GTMKAC	2 cut(s)	287, 1227
Fnu4HI	GCNGC	3 cut(s)	21, 1402, 1405
FokI	GGATG	2 cut(s)	574, 1116
Fsp4HI	GCNGC	3 cut(s)	21, 1402, 1405
FspAI	RTGCGCAY	1 cut(s)	1194
FspBI	CTAG	5 cut(s)	194, 207, 590, 657, 1088
FspI	TGCGCA	2 cut(s)	954, 1194
GlaI	GCGC	2 cut(s)	954, 1194
GluI	GCNGC	3 cut(s)	21, 1402, 1405
GsaI	CCCAGC	1 cut(s)	151
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	2 cut(s)	1095, 1223
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	2 cut(s)	955, 1195
Hin1II	CATG	9 cut(s)	91, 107, 203, 397, 475, 935, 1314, 1381, 1502
Hin6I	GCGC	2 cut(s)	953, 1193
HinP1I	GCGC	2 cut(s)	953, 1193
HindIII	AAGCTT	1 cut(s)	261
HinfI	GANTC	5 cut(s)	43, 342, 355, 605, 820
HpaII	CCGG	2 cut(s)	1095, 1223
HphI	GGTGA	2 cut(s)	52, 589
Hpy166II	GTNNAC	4 cut(s)	288, 1111, 1228, 1458
Hpy188III	TCNNGA	7 cut(s)	28, 77, 559, 590, 641, 895, 1513
Hpy8I	GTNNAC	4 cut(s)	288, 1111, 1228, 1458
HpyAV	CCTTC	2 cut(s)	768, 1269
HpyCH4III	ACNGT	4 cut(s)	746, 754, 802, 1485
HpyCH4IV	ACGT	1 cut(s)	1230
HpyCH4V	TGCA	7 cut(s)	20, 129, 305, 512, 649, 920, 946
HpyF10VI	GCNNNNNNNGC	7 cut(s)	20, 203, 302, 467, 926, 952, 1091
HpySE526I	ACGT	1 cut(s)	1230
Hsp92II	CATG	9 cut(s)	91, 107, 203, 397, 475, 935, 1314, 1381, 1502
HspAI	GCGC	2 cut(s)	953, 1193
Ksp22I	TGATCA	2 cut(s)	159, 840
Kzo9I	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
LmnI	GCTCC	5 cut(s)	144, 671, 1000, 1047, 1494
Lsp1109I	GCAGC	3 cut(s)	32, 1413, 1416
LweI	GCATC	2 cut(s)	552, 658
MaeI	CTAG	5 cut(s)	194, 207, 590, 657, 1088
MaeII	ACGT	1 cut(s)	1230
MalI	GATC	6 cut(s)	26, 153, 161, 685, 842, 1340
MboI	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
MboII	GAAGA	4 cut(s)	412, 1130, 1366, 1514
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	507
MluCI	AATT	4 cut(s)	8, 136, 1051, 1182
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	9 cut(s)	120, 417, 760, 825, 902, 919, 923, 1382, 1509
MseI	TTAA	4 cut(s)	738, 1061, 1202, 1488
MslI	CAYNNNNRTG	2 cut(s)	1389, 1503
MspI	CCGG	2 cut(s)	1095, 1223
MspR9I	CCNGG	5 cut(s)	174, 219, 1223, 1240, 1285
MvaI	CCWGG	4 cut(s)	174, 219, 1240, 1285
MwoI	GCNNNNNNNGC	7 cut(s)	20, 203, 302, 467, 926, 952, 1091
NciI	CCSGG	1 cut(s)	1223
NdeII	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
NlaIII	CATG	9 cut(s)	91, 107, 203, 397, 475, 935, 1314, 1381, 1502
NlaIV	GGNNCC	3 cut(s)	153, 351, 1496
NsbI	TGCGCA	2 cut(s)	954, 1194
NspI	RCATGY	2 cut(s)	203, 1314
OliI	CACNNNNGTG	1 cut(s)	1389
PciI	ACATGT	1 cut(s)	199
PfeI	GAWTC	4 cut(s)	43, 342, 355, 820
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	22, 1403, 1406
PleI	GAGTC	1 cut(s)	599
PpsI	GAGTC	1 cut(s)	599
PscI	ACATGT	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	275
Psp6I	CCWGG	4 cut(s)	172, 217, 1238, 1283
PspFI	CCCAGC	1 cut(s)	147
PspGI	CCWGG	4 cut(s)	172, 217, 1238, 1283
PspN4I	GGNNCC	3 cut(s)	153, 351, 1496
PspPI	GGNCC	1 cut(s)	350
PstI	CTGCAG	1 cut(s)	307
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	4 cut(s)	182, 476, 1110, 1211
RsaNI	GTAC	4 cut(s)	181, 475, 1109, 1210
RseI	CAYNNNNRTG	2 cut(s)	1389, 1503
SaqAI	TTAA	4 cut(s)	738, 1061, 1202, 1488
SatI	GCNGC	3 cut(s)	21, 1402, 1405
Sau3AI	GATC	6 cut(s)	24, 151, 159, 683, 840, 1338
Sau96I	GGNCC	1 cut(s)	350
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	5 cut(s)	174, 219, 1223, 1240, 1285
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	2 cut(s)	552, 658
SfcI	CTRYAG	1 cut(s)	303
SmiMI	CAYNNNNRTG	2 cut(s)	1389, 1503
SmlI	CTYRAG	1 cut(s)	111
SmoI	CTYRAG	1 cut(s)	111
Sse9I	AATT	4 cut(s)	8, 136, 1051, 1182
SsiI	CCGC	3 cut(s)	283, 459, 1314
SspMI	CTAG	5 cut(s)	194, 207, 590, 657, 1088
StyD4I	CCNGG	5 cut(s)	172, 217, 1221, 1238, 1283
TaaI	ACNGT	4 cut(s)	746, 754, 802, 1485
TaiI	ACGT	1 cut(s)	1233
TaqI	TCGA	4 cut(s)	53, 269, 1273, 1341
TasI	AATT	4 cut(s)	8, 136, 1051, 1182
TatI	WGTACW	3 cut(s)	180, 1108, 1209
TfiI	GAWTC	4 cut(s)	43, 342, 355, 820
Tru1I	TTAA	4 cut(s)	738, 1061, 1202, 1488
Tru9I	TTAA	4 cut(s)	738, 1061, 1202, 1488
TscAI	CASTG	3 cut(s)	514, 948, 997
TseI	GCWGC	3 cut(s)	20, 1401, 1404
TspDTI	ATGAA	4 cut(s)	92, 1220, 1366, 1515
TspGWI	ACGGA	1 cut(s)	1353
TspRI	CASTG	3 cut(s)	514, 948, 997
XapI	RAATTY	1 cut(s)	136
XbaI	TCTAGA	1 cut(s)	589
XceI	RCATGY	2 cut(s)	203, 1314
XmiI	GTMKAC	2 cut(s)	287, 1227
XspI	CTAG	5 cut(s)	194, 207, 590, 657, 1088

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.