Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004979

Physical Location & Seq

Genomic Coordinates Forward (+)

36970468 .. 36973043

Gene Structure 2576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024556

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGAGTAGGATAGCTGTGGCAACAATTGTGAGCTTGTGGGTAGTTCCCATCTCAATCCTTGTCAATCACATTGTTCCTGAACCTTACATGGATGAGATTTTCCATGTGCCTCAGGCCCAACAGTACTGCAGAGGCAATTTCAGAAGCTGGGATCCCATGATCACAACTCCTCCTGGCCTGTACTATCTTTCACTAGCCCATGTTGCTTGTTTGTTGTTTCCAGGCGTGTCTTTCGTAAAAGCAGCCTCTTCGTTTTCTGAAGGCTGCTCCACCGCGATTCTTCGCTCCTCGAATGGTGTTTTGGCAGTGGTTTGCAGTGTTCTTGTATATGAGATAATCAGACATTTGAGACCAAATCTTGATGAAAGAAAAGCAACTCTTATTGCAGTAGTTCTATCTATGTTTCCTCTCCATTGGTTCTTCACGTTTCTCTATTATACAGATGTTGCATCACTTGCTGCAGTGCTTGCTATGTATCTTGCGTGTTTGAAGAAGAGATACTGGTTCAGTGCATTGCTTGGTGCCCTGGCAGTTGTTATTCGGCAAACGAATATTGTATGGATACTTTTTGTGTGTTGCAGTGAGGTTATAAATATTACTTTGGCTGGTCAAAGAGATAGGATAGGTGTTGATGACACTGACTTCTCAGTTAGGAAGAATAGTAGGTTAATTCCTAAAAACAGTGTTTCAAACTTGAGGAAACGGAAGGTCAGCAGTTCAGCAGATACTGAGATACATTCAATGCTGACTTCAAGTGTTTCTTCTCAAAGTTGCACATCAGGTCTTCTCAATGAAACTAAGGCCATCTTTCAAAAACTGTGGCACATGAAGTTGGAATTTCTGGTTTCTTTGAGTCCTTTTATTATGGTATTTGCAAGCTTTGTTGCTTTTGTTTGTTGGAATGGGAGTGTTGTTCTAGGTGCGAAAGAAGCTCATGCAGTTTCTCCACATTTTGCACAGATCATGTATTTTGGTCTGTTTTCTGTTCTTGCTACGGCTCCAACATACTGTAGTTTCAGTCAAGCTGCGGAGTTATCCCGGTCAATTTGGAAGAACAAGTCTCTTGGTTTCTCTCAAATTACATTGGCACTTGTTGCTGGCTTCATCTCCATTCATTTTTTCAGCATAGCTCATCCCTATCTTCTAGCGGATAACCGGCATTATCCCTTTTATCTTTGGCGGAAGGTCATCAAAGCTCATTGGTCAATGAAGTACCTTCTAGTTCCACTTTATGTTTATTCATGGCTTTCCATCATCACTAGATTGGGGAAGGTTCAGAGGAAGATATGGGTGCTGGCATTTTTCTTGGCCACTGCTGCGGTTTTGGTCCCAGCGCCACTGATTGAGTTTAGATATTATACTATTCCATTCTTTTTCTTGATACTACATTCTCATATTGATGATAACCAAAGTTGGCTGGTCATGGGGTTTCTGTACGCAACTGTAAACGCCTTCACAATGGTGATGTTCTTATATCGCCCGTTCCATTGGTCCCATGAACCTGGAACACAGAGGTTTATATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070085 GO:0071704 GO:0098827 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DIE2_ALG10

Protein Analysis

509

Amino Acids

57.76

Weight (kDa)

9.44

Isoelectric Point (pI)

44.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIE2_ALG10	PF04922	25 - 461	2.3e-129	DIE2/ALG10 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02410
fragaria_vesca	FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910
malus_domestica	MD04G1127500.v1.1 MD12G1140900.v1.1
prunus_persica	Prupe.6G254200_v2.0.a1 Prupe.6G254200_v2.0.a1
pyrus_communis	pycom04g11440 pycom126g00050 pycom12g13580
rosa_chinensis	RchiOBHm_Chr3g0466751
rosa_laevigata	RLG00000024556
rosa_multiflora	Rmu_sc0026659.1_g000002 Rmu_sc0035686.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414200
rosa_rugosa	Rorug03G0083600 Rorug03G0083700
rosa_samantha	Rh3AG130700 Rh3BG151700 Rh3CG151600 Rh3DG152400
rosa_wichuraiana	Rw3G012330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	590
AccB1I	GGYRCC	1 cut(s)	521
AccII	CGCG	1 cut(s)	275
AciI	CCGC	5 cut(s)	273, 1028, 1148, 1180, 1319
AclWI	GGATC	2 cut(s)	146, 159
AcoI	YGGCCR	1 cut(s)	1308
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	1 cut(s)	279
AfaI	GTAC	4 cut(s)	125, 182, 1214, 1436
AgsI	TTSAA	5 cut(s)	490, 690, 741, 753, 812
AjnI	CCWGG	4 cut(s)	172, 220, 525, 1501
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AleI	CACNNNNGTG	1 cut(s)	1460
AluBI	AGCT	8 cut(s)	14, 33, 147, 879, 932, 1025, 1130, 1196
AluI	AGCT	8 cut(s)	14, 33, 147, 879, 932, 1025, 1130, 1196
Alw26I	GTCTC	2 cut(s)	343, 1065
AlwI	GGATC	2 cut(s)	146, 159
AlwNI	CAGNNNCTG	2 cut(s)	147, 728
AoxI	GGCC	4 cut(s)	114, 175, 801, 1308
ApeKI	GCWGC	5 cut(s)	242, 264, 458, 1025, 1316
ApoI	RAATTY	1 cut(s)	836
AspLEI	GCGC	1 cut(s)	1336
AspS9I	GGNCC	3 cut(s)	115, 1327, 1491
AsuC2I	CCSGG	1 cut(s)	1039
AsuHPI	GGTGA	1 cut(s)	1474
AvaII	GGWCC	2 cut(s)	1327, 1491
AxyI	CCTNAGG	1 cut(s)	111
BaeGI	GKGCMC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	1310
BamHI	GGATCC	1 cut(s)	151
BanI	GGYRCC	1 cut(s)	521
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	776
BbvI	GCAGC	5 cut(s)	251, 254, 445, 1012, 1303
BccI	CCATC	3 cut(s)	56, 812, 1259
BceAI	ACGGC	1 cut(s)	1011
BcgI	CGANNNNNNTGC	2 cut(s)	231, 265
BciT130I	CCWGG	4 cut(s)	174, 222, 527, 1503
BciVI	GTATCC	1 cut(s)	555
BclI	TGATCA	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	1039
BcoDI	GTCTC	2 cut(s)	343, 1065
BfaI	CTAG	5 cut(s)	194, 917, 1145, 1220, 1260
BfmI	CTRYAG	3 cut(s)	127, 459, 1009
BfoI	RGCGCY	1 cut(s)	1337
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	5 cut(s)	243, 265, 459, 1026, 1317
BlsI	GCNGC	5 cut(s)	244, 266, 460, 1027, 1318
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	5 cut(s)	174, 222, 527, 1039, 1503
Bme18I	GGWCC	2 cut(s)	1327, 1491
BmgT120I	GGNCC	3 cut(s)	115, 1327, 1491
BmiI	GGNNCC	5 cut(s)	153, 523, 999, 1329, 1493
BmrFI	CCNGG	5 cut(s)	174, 222, 527, 1039, 1503
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	715
BpuMI	CCSGG	1 cut(s)	1039
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	1 cut(s)	525
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bse118I	RCCGGY	1 cut(s)	1155
Bse1I	ACTGG	1 cut(s)	506
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	512
BseBI	CCWGG	4 cut(s)	174, 222, 527, 1503
BseDI	CCNNGG	1 cut(s)	525
BseGI	GGATG	2 cut(s)	97, 1132
BseMI	GCAATG	1 cut(s)	512
BseMII	CTCAG	3 cut(s)	125, 660, 720
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	159, 277
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	5 cut(s)	251, 254, 445, 1012, 1303
BseYI	CCCAGC	2 cut(s)	147, 1330
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	4 cut(s)	116, 177, 803, 1310
BshNI	GGYRCC	1 cut(s)	521
BsiSI	CCGG	2 cut(s)	1039, 1156
BslFI	GGGAC	2 cut(s)	1313, 1477
BsmAI	GTCTC	2 cut(s)	343, 1065
BsmFI	GGGAC	2 cut(s)	1313, 1477
BsnI	GGCC	4 cut(s)	116, 177, 803, 1310
Bso31I	GGTCTC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	3 cut(s)	151, 159, 960
BspACI	CCGC	5 cut(s)	273, 1028, 1148, 1180, 1319
BspANI	GGCC	4 cut(s)	116, 177, 803, 1310
BspCNI	CTCAG	3 cut(s)	124, 659, 721
BspFNI	CGCG	1 cut(s)	275
BspLI	GGNNCC	5 cut(s)	153, 523, 999, 1329, 1493
BspMAI	CTGCAG	2 cut(s)	131, 463
BspPI	GGATC	2 cut(s)	146, 159
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	1155
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	1 cut(s)	1155
BssECI	CCNNGG	1 cut(s)	525
BssMI	GATC	3 cut(s)	151, 159, 960
Bst2UI	CCWGG	4 cut(s)	174, 222, 527, 1503
Bst4CI	ACNGT	5 cut(s)	123, 683, 819, 1010, 1444
Bst6I	CTCTTC	2 cut(s)	253, 488
BstAPI	GCANNNNNTGC	3 cut(s)	455, 467, 1094
BstC8I	GCNNGC	4 cut(s)	468, 877, 1099, 1296
BstDEI	CTNAG	4 cut(s)	111, 646, 729, 798
BstF5I	GGATG	2 cut(s)	97, 1132
BstFNI	CGCG	1 cut(s)	275
BstH2I	RGCGCY	1 cut(s)	1337
BstHHI	GCGC	1 cut(s)	1336
BstKTI	GATC	3 cut(s)	154, 162, 963
BstMAI	GTCTC	2 cut(s)	343, 1065
BstMBI	GATC	3 cut(s)	151, 159, 960
BstMWI	GCNNNNNNNGC	6 cut(s)	203, 455, 467, 929, 1094, 1316
BstNI	CCWGG	4 cut(s)	174, 222, 527, 1503
BstSCI	CCNGG	5 cut(s)	172, 220, 525, 1037, 1501
BstSFI	CTRYAG	3 cut(s)	127, 459, 1009
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	5 cut(s)	251, 254, 445, 1012, 1303
BstV2I	GAAGAC	1 cut(s)	776
BstX2I	RGATCY	1 cut(s)	151
BstXI	CCANNNNNNTGG	1 cut(s)	1502
BstYI	RGATCY	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	4 cut(s)	116, 177, 803, 1310
BtsCI	GGATG	2 cut(s)	97, 1132
BtsI	GCAGTG	5 cut(s)	312, 322, 468, 586, 1311
BtsIMutI	CAGTG	9 cut(s)	312, 322, 468, 514, 586, 636, 688, 1311, 1337
Cac8I	GCNNGC	4 cut(s)	468, 877, 1099, 1296
CaiI	CAGNNNCTG	2 cut(s)	147, 728
CfoI	GCGC	1 cut(s)	1336
Cfr10I	RCCGGY	1 cut(s)	1155
Cfr13I	GGNCC	3 cut(s)	115, 1327, 1491
Csp6I	GTAC	4 cut(s)	124, 181, 1213, 1435
CspCI	CAANNNNNGTGG	2 cut(s)	800, 835
CviQI	GTAC	4 cut(s)	124, 181, 1213, 1435
DdeI	CTNAG	4 cut(s)	111, 646, 729, 798
DpnI	GATC	3 cut(s)	153, 161, 962
DpnII	GATC	3 cut(s)	151, 159, 960
EaeI	YGGCCR	1 cut(s)	1308
Eam1104I	CTCTTC	2 cut(s)	253, 488
EarI	CTCTTC	2 cut(s)	253, 488
EciI	GGCGGA	1 cut(s)	1195
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	1327, 1491
Eco57I	CTGAAG	1 cut(s)	279
Eco81I	CCTNAGG	1 cut(s)	111
EcoRII	CCWGG	4 cut(s)	172, 220, 525, 1501
FalI	AAGNNNNNCTT	6 cut(s)	363, 395, 745, 777, 791, 823
FaqI	GGGAC	2 cut(s)	1313, 1477
FbaI	TGATCA	1 cut(s)	159
Fnu4HI	GCNGC	5 cut(s)	243, 265, 459, 1026, 1317
FokI	GGATG	2 cut(s)	104, 1119
Fsp4HI	GCNGC	5 cut(s)	243, 265, 459, 1026, 1317
FspBI	CTAG	5 cut(s)	194, 917, 1145, 1220, 1260
GlaI	GCGC	1 cut(s)	1335
GluI	GCNGC	5 cut(s)	243, 265, 459, 1026, 1317
GsaI	CCCAGC	2 cut(s)	151, 1334
HaeII	RGCGCY	1 cut(s)	1337
HaeIII	GGCC	4 cut(s)	116, 177, 803, 1310
HapII	CCGG	2 cut(s)	1039, 1156
HhaI	GCGC	1 cut(s)	1336
Hin6I	GCGC	1 cut(s)	1334
HinP1I	GCGC	1 cut(s)	1334
HindIII	AAGCTT	1 cut(s)	877
HinfI	GANTC	2 cut(s)	277, 853
HpaII	CCGG	2 cut(s)	1039, 1156
HphI	GGTGA	1 cut(s)	1474
Hpy166II	GTNNAC	1 cut(s)	1447
Hpy188I	TCNGA	4 cut(s)	143, 259, 341, 1278
Hpy188III	TCNNGA	3 cut(s)	77, 359, 1378
Hpy8I	GTNNAC	1 cut(s)	1447
HpyAV	CCTTC	6 cut(s)	254, 700, 1177, 1226, 1264, 1462
HpyCH4III	ACNGT	5 cut(s)	123, 683, 819, 1010, 1444
HpyCH4IV	ACGT	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	6 cut(s)	203, 455, 467, 929, 1094, 1316
HpyF3I	CTNAG	4 cut(s)	111, 646, 729, 798
HpySE526I	ACGT	1 cut(s)	425
HspAI	GCGC	1 cut(s)	1334
Ksp22I	TGATCA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	151, 159, 960
LmnI	GCTCC	3 cut(s)	272, 290, 1003
Lsp1109I	GCAGC	5 cut(s)	251, 254, 445, 1012, 1303
LweI	GCATC	1 cut(s)	458
MaeI	CTAG	5 cut(s)	194, 917, 1145, 1220, 1260
MaeII	ACGT	1 cut(s)	425
MalI	GATC	3 cut(s)	153, 161, 962
MboI	GATC	3 cut(s)	151, 159, 960
MfeI	CAATTG	1 cut(s)	24
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	526
MlsI	TGGCCA	1 cut(s)	1310
MluCI	AATT	6 cut(s)	24, 136, 669, 836, 1044, 1077
MluNI	TGGCCA	1 cut(s)	1310
MlyI	GAGTC	1 cut(s)	862
MmeI	TCCRAC	3 cut(s)	813, 878, 1025
Mox20I	TGGCCA	1 cut(s)	1310
MscI	TGGCCA	1 cut(s)	1310
MseI	TTAA	1 cut(s)	668
MslI	CAYNNNNRTG	2 cut(s)	1398, 1460
Msp20I	TGGCCA	1 cut(s)	1310
MspI	CCGG	2 cut(s)	1039, 1156
MspR9I	CCNGG	5 cut(s)	174, 222, 527, 1039, 1503
MunI	CAATTG	1 cut(s)	24
MvaI	CCWGG	4 cut(s)	174, 222, 527, 1503
MvnI	CGCG	1 cut(s)	275
MwoI	GCNNNNNNNGC	6 cut(s)	203, 455, 467, 929, 1094, 1316
NciI	CCSGG	1 cut(s)	1039
NdeII	GATC	3 cut(s)	151, 159, 960
NlaIV	GGNNCC	5 cut(s)	153, 523, 999, 1329, 1493
OliI	CACNNNNGTG	1 cut(s)	1460
PfeI	GAWTC	1 cut(s)	277
PkrI	GCNGC	5 cut(s)	244, 266, 460, 1027, 1318
PleI	GAGTC	1 cut(s)	861
PpsI	GAGTC	1 cut(s)	861
PsiI	TTATAA	1 cut(s)	590
Psp6I	CCWGG	4 cut(s)	172, 220, 525, 1501
PspFI	CCCAGC	2 cut(s)	147, 1330
PspGI	CCWGG	4 cut(s)	172, 220, 525, 1501
PspN4I	GGNNCC	5 cut(s)	153, 523, 999, 1329, 1493
PspPI	GGNCC	3 cut(s)	115, 1327, 1491
PstI	CTGCAG	2 cut(s)	131, 463
PstNI	CAGNNNCTG	2 cut(s)	147, 728
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	4 cut(s)	125, 182, 1214, 1436
RsaNI	GTAC	4 cut(s)	124, 181, 1213, 1435
RseI	CAYNNNNRTG	2 cut(s)	1398, 1460
SaqAI	TTAA	1 cut(s)	668
SatI	GCNGC	5 cut(s)	243, 265, 459, 1026, 1317
Sau3AI	GATC	3 cut(s)	151, 159, 960
Sau96I	GGNCC	3 cut(s)	115, 1327, 1491
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	862
ScrFI	CCNGG	5 cut(s)	174, 222, 527, 1039, 1503
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	458
SfcI	CTRYAG	3 cut(s)	127, 459, 1009
SinI	GGWCC	2 cut(s)	1327, 1491
SmiMI	CAYNNNNRTG	2 cut(s)	1398, 1460
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	6 cut(s)	24, 136, 669, 836, 1044, 1077
SsiI	CCGC	5 cut(s)	273, 1028, 1148, 1180, 1319
SspI	AATATT	2 cut(s)	553, 595
SspMI	CTAG	5 cut(s)	194, 917, 1145, 1220, 1260
StyD4I	CCNGG	5 cut(s)	172, 220, 525, 1037, 1501
TaaI	ACNGT	5 cut(s)	123, 683, 819, 1010, 1444
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	1 cut(s)	290
TasI	AATT	6 cut(s)	24, 136, 669, 836, 1044, 1077
TatI	WGTACW	2 cut(s)	123, 180
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	1 cut(s)	668
Tru9I	TTAA	1 cut(s)	668
TscAI	CASTG	9 cut(s)	312, 322, 468, 514, 586, 643, 688, 1318, 1344
TseI	GCWGC	5 cut(s)	242, 264, 458, 1025, 1316
TspDTI	ATGAA	8 cut(s)	378, 807, 842, 1093, 1103, 1223, 1230, 1512
TspGWI	ACGGA	1 cut(s)	718
TspRI	CASTG	9 cut(s)	312, 322, 468, 514, 586, 643, 688, 1318, 1344
VpaK11BI	GGWCC	2 cut(s)	1327, 1491
XapI	RAATTY	1 cut(s)	836
XspI	CTAG	5 cut(s)	194, 917, 1145, 1220, 1260
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.