Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026659.1

Orthogroup ID

OG0004979

Physical Location & Seq

Genomic Coordinates Forward (+)

8592 .. 9467

Gene Structure 876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026659.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgttgttgttctcgtgcgagattgatttggttggattccaaattttcgccagccgatatggttacgtttttgtgccaccattaggtttggctggtggcggccacgtcactacgccgtccctcttctggccgatttgcatcttggttggagcttgtaaggctatttggttatgcactaaaccgaaagcagagtcaatattagttcttaagaaactggacaagtctacaaagtttgcaaagaaggaggactcgcgcctaatttacagagataagatgggtaggatagctgtggcaacaattgtgagcttgtgggtagttcccatctcaatccttgtcaatcacattgttcctgaaccttacatggatgagattttccatgtgcctcaggctcaacagtactgcaaaggcaatttcagaagctgggatcccatgatcactactcctcctggcctgtatgcatatcgtgattcttttgaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070085 GO:0071704 GO:0098827 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DIE2_ALG10

Protein Analysis

160

Amino Acids

18.05

Weight (kDa)

8.8

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02410
fragaria_vesca	FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910
malus_domestica	MD04G1127500.v1.1 MD12G1140900.v1.1
prunus_persica	Prupe.6G254200_v2.0.a1 Prupe.6G254200_v2.0.a1
pyrus_communis	pycom04g11440 pycom126g00050 pycom12g13580
rosa_chinensis	RchiOBHm_Chr3g0466751
rosa_laevigata	RLG00000024556
rosa_multiflora	Rmu_sc0026659.1_g000002 Rmu_sc0035686.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414200
rosa_rugosa	Rorug03G0083600 Rorug03G0083700
rosa_samantha	Rh3AG130700 Rh3BG151700 Rh3CG151600 Rh3DG152400
rosa_wichuraiana	Rw3G012330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	1 cut(s)	253
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	2 cut(s)	419, 432
AcoI	YGGCCR	2 cut(s)	100, 128
AcsI	RAATTY	1 cut(s)	42
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	83, 126
AflII	CTTAAG	1 cut(s)	206
AgsI	TTSAA	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	445
AluBI	AGCT	4 cut(s)	152, 287, 306, 420
AluI	AGCT	4 cut(s)	152, 287, 306, 420
AlwI	GGATC	2 cut(s)	419, 432
AlwNI	CAGNNNCTG	1 cut(s)	420
AoxI	GGCC	3 cut(s)	100, 128, 448
ApoI	RAATTY	1 cut(s)	42
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspLEI	GCGC	1 cut(s)	255
AxyI	CCTNAGG	1 cut(s)	384
BamHI	GGATCC	1 cut(s)	424
BauI	CACGAG	1 cut(s)	13
BccI	CCATC	2 cut(s)	268, 329
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	447
BclI	TGATCA	1 cut(s)	432
BfrI	CTTAAG	1 cut(s)	206
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	447
BmgBI	CACGTC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	426
BmrFI	CCNGG	1 cut(s)	447
BmsI	GCATC	1 cut(s)	147
BsaBI	GATNNNNATC	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 126
Bse1I	ACTGG	1 cut(s)	219
Bse21I	CCTNAGG	1 cut(s)	384
Bse8I	GATNNNNATC	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	447
BseGI	GGATG	1 cut(s)	370
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	2 cut(s)	83, 126
BseMII	CTCAG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	432
BseYI	CCCAGC	1 cut(s)	420
Bsh1236I	CGCG	1 cut(s)	253
BshFI	GGCC	3 cut(s)	102, 130, 450
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	2 cut(s)	83, 126
BsmFI	GGGAC	1 cut(s)	103
BsnI	GGCC	3 cut(s)	102, 130, 450
Bsp143I	GATC	2 cut(s)	424, 432
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	3 cut(s)	102, 130, 450
BspCNI	CTCAG	1 cut(s)	397
BspFNI	CGCG	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	2 cut(s)	419, 432
BspTI	CTTAAG	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	219
BssMI	GATC	2 cut(s)	424, 432
BssSI	CACGAG	1 cut(s)	13
Bst2BI	CACGAG	1 cut(s)	13
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	396
Bst6I	CTCTTC	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	384, 480
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	1 cut(s)	253
BstHHI	GCGC	1 cut(s)	255
BstKTI	GATC	2 cut(s)	427, 435
BstMBI	GATC	2 cut(s)	424, 432
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	447
BstSCI	CCNGG	1 cut(s)	445
BstUI	CGCG	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
Bsu36I	CCTNAGG	1 cut(s)	384
BsuRI	GGCC	3 cut(s)	102, 130, 450
BtrI	CACGTC	1 cut(s)	106
BtsCI	GGATG	1 cut(s)	370
Cac8I	GCNNGC	1 cut(s)	52
CaiI	CAGNNNCTG	1 cut(s)	420
CfoI	GCGC	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	361, 377, 430
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	2 cut(s)	384, 480
DpnI	GATC	2 cut(s)	426, 434
DpnII	GATC	2 cut(s)	424, 432
EaeI	YGGCCR	2 cut(s)	100, 128
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	460
FaeI	CATG	3 cut(s)	364, 380, 433
FaiI	YATR	7 cut(s)	60, 172, 362, 378, 431, 456, 460
FaqI	GGGAC	1 cut(s)	103
FatI	CATG	3 cut(s)	360, 376, 429
FbaI	TGATCA	1 cut(s)	432
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	1 cut(s)	100
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	100
GlaI	GCGC	1 cut(s)	254
GluI	GCNGC	1 cut(s)	100
GsaI	CCCAGC	1 cut(s)	424
HaeIII	GGCC	3 cut(s)	102, 130, 450
HhaI	GCGC	1 cut(s)	255
Hin1II	CATG	3 cut(s)	364, 380, 433
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HinfI	GANTC	4 cut(s)	36, 191, 248, 467
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	2 cut(s)	350, 464
Hpy8I	GTNNAC	1 cut(s)	225
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	396
HpyCH4IV	ACGT	2 cut(s)	66, 105
HpyCH4V	TGCA	5 cut(s)	138, 174, 236, 402, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	2 cut(s)	384, 480
HpySE526I	ACGT	2 cut(s)	66, 105
Hsp92II	CATG	3 cut(s)	364, 380, 433
HspAI	GCGC	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	424, 432
LmnI	GCTCC	1 cut(s)	149
LweI	GCATC	1 cut(s)	147
MaeII	ACGT	2 cut(s)	66, 105
MaeIII	GTNAC	2 cut(s)	62, 106
MalI	GATC	2 cut(s)	426, 434
MboI	GATC	2 cut(s)	424, 432
MboII	GAAGA	1 cut(s)	115
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	424
MluCI	AATT	4 cut(s)	42, 258, 297, 409
MlyI	GAGTC	2 cut(s)	200, 242
MmeI	TCCRAC	2 cut(s)	13, 127
MnlI	CCTC	4 cut(s)	131, 238, 393, 453
Mph1103I	ATGCAT	1 cut(s)	460
MseI	TTAA	1 cut(s)	207
MspCI	CTTAAG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	447
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	253
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	2 cut(s)	424, 432
NlaIII	CATG	3 cut(s)	364, 380, 433
NlaIV	GGNNCC	1 cut(s)	426
NmuCI	GTSAC	1 cut(s)	106
NsiI	ATGCAT	1 cut(s)	460
PfeI	GAWTC	2 cut(s)	36, 467
PkrI	GCNGC	1 cut(s)	101
PleI	GAGTC	2 cut(s)	199, 242
PpsI	GAGTC	2 cut(s)	199, 242
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	424
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	1 cut(s)	100
Sau3AI	GATC	2 cut(s)	424, 432
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	200, 242
ScrFI	CCNGG	1 cut(s)	447
SetI	ASST	8 cut(s)	69, 88, 108, 154, 289, 308, 358, 422
SfaNI	GCATC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	4 cut(s)	42, 258, 297, 409
SsiI	CCGC	1 cut(s)	99
SspI	AATATT	1 cut(s)	198
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	396
TaiI	ACGT	2 cut(s)	69, 108
TasI	AATT	4 cut(s)	42, 258, 297, 409
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	36, 467
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
Vha464I	CTTAAG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	42
XmiI	GTMKAC	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	398
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.