Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004979

Physical Location & Seq

Genomic Coordinates Forward (+)

16069870 .. 16072266

Gene Structure 2397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13580.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAACCAAACAGACCCTTTAGATTTGATTCTGAACAGCAGAGAAACATGGGTAGGATTGCCGTAGCCGCGATTGTGAGCCTCTGGGTAATTCCTATCCCCATCCTCGTCAGTCACATTGTTCCCGAACCCTACATGGATGAGATATTCCATGTGCCTCAAGCACAACAGTACTGCAATGGCAATTTCAGAAGCTGGGATCCCATGATCACCACTCCTCCTGGCCTGTACTATCTTTCACTAGCTCATGTTGCATATTTGTTTCCAGGCATGTCAGTCGTAAAAGCAGCCACGTCGTTTTCTGAAGGCTGCTCCACAGCCATTCTTCGCTCTTTCAATGGTGTTTTGGCGGTATTTTGCAGCGTTGTTGTGTATGAGATAATCATTCACTTGAGACCCGCTCTTGATGAAAGAAAAGCAACACTTTATGCGGTGGTGCTAGCCATTTACCCGCTTCATTGGTTCTTCAGTTTTCTCTATTATACAGATGTTGCGTCACTTGCTGCAGTGCTTGCTATGCATCTTGCGTGTTTGAAGAAGAAGTACTGGTTTAGTGCATTGCTTGGTTCCGTGGCAGTTGTTATTCGGCAAACAAATATTATATGGATGCTTTTTGTTTGTTGCAGTGAGGTTATAAATATTACAATGGCTGACCATAAAGATAAGATATATGTAGACAACACAATTAGGATAAAAGGTCAGCCAACTCCTTCAAACAGTGTTACTTTAGGCTCAAACTTGAGAAAGCGGAAGGCAACCACTGTAGTGGATACTGGAAGACATTTAATCTCGACTAGAAAAGTTTCTTTTCAAACTTGCAAATTAGGTTTTCTTGATGAAATTGAGGCAATCTTTCCAAAATTATGGCACATGAAGTTGGAACTTTTGGTTTCTTTCAGCCCTTTTATTCTAGTATTGGCAGCCTTTATTGCCTTTGTTCGGTGGAATGGGAGTGTGGTTCTAGGTGCAAAAGATGCTCATGCAGTTTCTCCACATTTTGCACAGATCATGTATTTCGGTCTGTTTTCTGCCCTTGCTATGGCTCCTATGCTCTTGAGCCCGAGTCAAACTGTAGATTTATTCCGGTCAATGTGGAAGAACAAGTTCCTTACCTTCATTCAGATATCTTTGACACTTGGTGCTGGCTTCATTGCAGTCCATTTTTTCAGCATAGCTCATCCCTATCTTCTGGCTGACAATCGGCATTATCCTTTTTATCTTTGGCGGAAGGTCATCAAAGCTCATTGGTCAATGAAGGAAGTTTCAGAGGAAGATCTGGGTGCTGGCATTTTTCTTGGCTACTGCTGCAGTTTTGGTTCCCGCACCACTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070085 GO:0071704 GO:0098827 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DIE2_ALG10

Protein Analysis

445

Amino Acids

50.14

Weight (kDa)

9.09

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02410
fragaria_vesca	FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910
malus_domestica	MD04G1127500.v1.1 MD12G1140900.v1.1
prunus_persica	Prupe.6G254200_v2.0.a1 Prupe.6G254200_v2.0.a1
pyrus_communis	pycom04g11440 pycom126g00050 pycom12g13580
rosa_chinensis	RchiOBHm_Chr3g0466751
rosa_laevigata	RLG00000024556
rosa_multiflora	Rmu_sc0026659.1_g000002 Rmu_sc0035686.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414200
rosa_rugosa	Rorug03G0083600 Rorug03G0083700
rosa_samantha	Rh3AG130700 Rh3BG151700 Rh3CG151600 Rh3DG152400
rosa_wichuraiana	Rw3G012330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	635
AccBSI	CCGCTC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	675
AccII	CGCG	1 cut(s)	71
AciI	CCGC	8 cut(s)	69, 350, 399, 431, 452, 748, 1225, 1321
AclWI	GGATC	2 cut(s)	194, 207
AcuI	CTGAAG	2 cut(s)	324, 451
AdeI	CACNNNGTG	1 cut(s)	1139
AfaI	GTAC	3 cut(s)	173, 230, 545
AfiI	CCNNNNNNNGG	2 cut(s)	939, 1039
AgsI	TTSAA	4 cut(s)	337, 535, 714, 812
AjiI	CACGTC	1 cut(s)	294
AjnI	CCWGG	2 cut(s)	220, 265
AleI	CACNNNNGTG	1 cut(s)	764
AluBI	AGCT	4 cut(s)	195, 245, 1175, 1241
AluI	AGCT	4 cut(s)	195, 245, 1175, 1241
Alw26I	GTCTC	1 cut(s)	388
AlwI	GGATC	2 cut(s)	194, 207
AlwNI	CAGNNNCTG	1 cut(s)	195
Ama87I	CYCGRG	1 cut(s)	1060
AoxI	GGCC	1 cut(s)	223
ApeKI	GCWGC	6 cut(s)	287, 309, 360, 503, 920, 1305
Asp700I	GAANNNNTTC	2 cut(s)	802, 1103
AsuHPI	GGTGA	1 cut(s)	202
AsuNHI	GCTAGC	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	1060
BamHI	GGATCC	1 cut(s)	199
BanII	GRGCYC	1 cut(s)	1061
BarI	GAAGNNNNNNTAC	2 cut(s)	527, 559
BbsI	GAAGAC	1 cut(s)	784
BbvI	GCAGC	6 cut(s)	296, 299, 372, 490, 932, 1292
BccI	CCATC	1 cut(s)	110
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	4 cut(s)	259, 276, 293, 310
BciT130I	CCWGG	2 cut(s)	222, 267
BciVI	GTATCC	1 cut(s)	763
BclI	TGATCA	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	388
BfaI	CTAG	5 cut(s)	242, 440, 795, 911, 962
BfmI	CTRYAG	4 cut(s)	504, 762, 1071, 1306
BfuI	GTATCC	1 cut(s)	763
BglII	AGATCT	1 cut(s)	1273
BisI	GCNGC	7 cut(s)	69, 288, 310, 361, 504, 921, 1306
BlsI	GCNGC	7 cut(s)	70, 289, 311, 362, 505, 922, 1307
BmcAI	AGTACT	2 cut(s)	173, 545
Bme1390I	CCNGG	2 cut(s)	222, 267
BmeT110I	CYCGRG	1 cut(s)	1060
BmgBI	CACGTC	1 cut(s)	294
BmiI	GGNNCC	5 cut(s)	6, 201, 568, 1044, 1318
BmrFI	CCNGG	2 cut(s)	222, 267
BmsI	GCATC	3 cut(s)	529, 597, 964
BmtI	GCTAGC	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	784
BplI	GAGNNNNNCTC	2 cut(s)	385, 417
BpuEI	CTTGAG	4 cut(s)	144, 412, 760, 1075
BsaI	GGTCTC	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	570
BsaWI	WCCGGW	1 cut(s)	1083
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	939, 1039
Bse1I	ACTGG	2 cut(s)	551, 778
Bse3DI	GCAATG	3 cut(s)	184, 557, 1149
BseBI	CCWGG	2 cut(s)	222, 267
BseDI	CCNNGG	1 cut(s)	570
BseGI	GGATG	4 cut(s)	102, 145, 612, 1177
BseLI	CCNNNNNNNGG	2 cut(s)	939, 1039
BseMI	GCAATG	3 cut(s)	184, 557, 1149
BseNI	ACTGG	2 cut(s)	551, 778
BseRI	GAGGAG	1 cut(s)	207
BseXI	GCAGC	6 cut(s)	296, 299, 372, 490, 932, 1292
BseYI	CCCAGC	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	71
BshFI	GGCC	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	1060
BsiSI	CCGG	1 cut(s)	1084
BslI	CCNNNNNNNGG	2 cut(s)	939, 1039
BsmAI	GTCTC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	225
Bso31I	GGTCTC	1 cut(s)	388
BsoBI	CYCGRG	1 cut(s)	1060
Bsp1286I	GDGCHC	1 cut(s)	1061
Bsp143I	GATC	4 cut(s)	199, 207, 1005, 1273
BspACI	CCGC	8 cut(s)	69, 350, 399, 431, 452, 748, 1225, 1321
BspANI	GGCC	1 cut(s)	225
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	5 cut(s)	6, 201, 568, 1044, 1318
BspMAI	CTGCAG	2 cut(s)	508, 1310
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	194, 207
BspTNI	GGTCTC	1 cut(s)	388
BsrBI	CCGCTC	1 cut(s)	401
BsrDI	GCAATG	3 cut(s)	184, 557, 1149
BsrI	ACTGG	2 cut(s)	551, 778
BssECI	CCNNGG	1 cut(s)	570
BssMI	GATC	4 cut(s)	199, 207, 1005, 1273
Bst2UI	CCWGG	2 cut(s)	222, 267
Bst4CI	ACNGT	4 cut(s)	171, 719, 763, 1072
BstAPI	GCANNNNNTGC	2 cut(s)	512, 974
BstC8I	GCNNGC	4 cut(s)	441, 513, 1144, 1285
BstDSI	CCRYGG	1 cut(s)	570
BstF5I	GGATG	4 cut(s)	102, 145, 612, 1177
BstFNI	CGCG	1 cut(s)	71
BstKTI	GATC	4 cut(s)	202, 210, 1008, 1276
BstMAI	GTCTC	1 cut(s)	388
BstMBI	GATC	4 cut(s)	199, 207, 1005, 1273
BstMWI	GCNNNNNNNGC	8 cut(s)	68, 251, 500, 512, 517, 929, 974, 1305
BstNI	CCWGG	2 cut(s)	222, 267
BstNSI	RCATGY	1 cut(s)	274
BstSCI	CCNGG	2 cut(s)	220, 265
BstSFI	CTRYAG	4 cut(s)	504, 762, 1071, 1306
BstUI	CGCG	1 cut(s)	71
BstV1I	GCAGC	6 cut(s)	296, 299, 372, 490, 932, 1292
BstV2I	GAAGAC	1 cut(s)	784
BstX2I	RGATCY	2 cut(s)	199, 1273
BstXI	CCANNNNNNTGG	2 cut(s)	766, 864
BstYI	RGATCY	2 cut(s)	199, 1273
BsuI	GTATCC	1 cut(s)	763
BsuRI	GGCC	1 cut(s)	225
BtgI	CCRYGG	1 cut(s)	570
BtrI	CACGTC	1 cut(s)	294
BtsCI	GGATG	4 cut(s)	102, 145, 612, 1177
BtsI	GCAGTG	2 cut(s)	513, 631
BtsIMutI	CAGTG	5 cut(s)	513, 631, 724, 759, 1326
Cac8I	GCNNGC	4 cut(s)	441, 513, 1144, 1285
CaiI	CAGNNNCTG	1 cut(s)	195
CseI	GACGC	1 cut(s)	483
Csp6I	GTAC	3 cut(s)	172, 229, 544
CviAII	CATG	9 cut(s)	49, 136, 152, 205, 248, 271, 871, 980, 1009
CviQI	GTAC	3 cut(s)	172, 229, 544
DpnI	GATC	4 cut(s)	201, 209, 1007, 1275
DpnII	GATC	4 cut(s)	199, 207, 1005, 1273
DraIII	CACNNNGTG	1 cut(s)	1139
EciI	GGCGGA	1 cut(s)	1240
Eco24I	GRGCYC	1 cut(s)	1061
Eco31I	GGTCTC	1 cut(s)	388
Eco32I	GATATC	1 cut(s)	1125
Eco57I	CTGAAG	2 cut(s)	324, 451
Eco88I	CYCGRG	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	220, 265
EcoRV	GATATC	1 cut(s)	1125
EcoT22I	ATGCAT	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	1061
FaeI	CATG	9 cut(s)	52, 139, 155, 208, 251, 274, 874, 983, 1012
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FatI	CATG	9 cut(s)	48, 135, 151, 204, 247, 270, 870, 979, 1008
FauI	CCCGC	3 cut(s)	406, 459, 1328
FbaI	TGATCA	1 cut(s)	207
FblI	GTMKAC	1 cut(s)	675
Fnu4HI	GCNGC	7 cut(s)	69, 288, 310, 361, 504, 921, 1306
FokI	GGATG	4 cut(s)	89, 152, 619, 1164
FriOI	GRGCYC	1 cut(s)	1061
Fsp4HI	GCNGC	7 cut(s)	69, 288, 310, 361, 504, 921, 1306
FspBI	CTAG	5 cut(s)	242, 440, 795, 911, 962
GluI	GCNGC	7 cut(s)	69, 288, 310, 361, 504, 921, 1306
GsaI	CCCAGC	1 cut(s)	199
HaeIII	GGCC	1 cut(s)	225
HapII	CCGG	1 cut(s)	1084
HgaI	GACGC	1 cut(s)	483
Hin1II	CATG	9 cut(s)	52, 139, 155, 208, 251, 274, 874, 983, 1012
HinfI	GANTC	2 cut(s)	29, 1063
HpaII	CCGG	1 cut(s)	1084
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	676
Hpy188I	TCNGA	5 cut(s)	34, 191, 304, 1122, 1267
Hpy188III	TCNNGA	5 cut(s)	125, 404, 790, 833, 1054
Hpy8I	GTNNAC	1 cut(s)	676
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	6 cut(s)	299, 720, 745, 1123, 1222, 1249
HpyCH4III	ACNGT	4 cut(s)	171, 719, 763, 1072
HpyCH4IV	ACGT	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	8 cut(s)	68, 251, 500, 512, 517, 929, 974, 1305
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	9 cut(s)	52, 139, 155, 208, 251, 274, 874, 983, 1012
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	4 cut(s)	199, 207, 1005, 1273
LmnI	GCTCC	2 cut(s)	317, 1048
Lsp1109I	GCAGC	6 cut(s)	296, 299, 372, 490, 932, 1292
LweI	GCATC	3 cut(s)	529, 597, 964
MaeI	CTAG	5 cut(s)	242, 440, 795, 911, 962
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	3 cut(s)	113, 495, 721
MalI	GATC	4 cut(s)	201, 209, 1007, 1275
MbiI	CCGCTC	1 cut(s)	401
MboI	GATC	4 cut(s)	199, 207, 1005, 1273
MboII	GAAGA	8 cut(s)	317, 457, 547, 550, 789, 1108, 1178, 1283
MflI	RGATCY	2 cut(s)	199, 1273
MhlI	GDGCHC	1 cut(s)	1061
MluCI	AATT	6 cut(s)	90, 184, 684, 821, 840, 860
MlyI	GAGTC	1 cut(s)	1072
MmeI	TCCRAC	1 cut(s)	858
MnlI	CCTC	7 cut(s)	92, 116, 168, 228, 622, 838, 1261
Mph1103I	ATGCAT	1 cut(s)	522
MroXI	GAANNNNTTC	2 cut(s)	802, 1103
MseI	TTAA	1 cut(s)	785
MslI	CAYNNNNRTG	1 cut(s)	764
MspI	CCGG	1 cut(s)	1084
MspR9I	CCNGG	2 cut(s)	222, 267
MvaI	CCWGG	2 cut(s)	222, 267
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	8 cut(s)	68, 251, 500, 512, 517, 929, 974, 1305
NdeII	GATC	4 cut(s)	199, 207, 1005, 1273
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	9 cut(s)	52, 139, 155, 208, 251, 274, 874, 983, 1012
NlaIV	GGNNCC	5 cut(s)	6, 201, 568, 1044, 1318
NmuCI	GTSAC	2 cut(s)	113, 495
NsiI	ATGCAT	1 cut(s)	522
NspI	RCATGY	1 cut(s)	274
OliI	CACNNNNGTG	1 cut(s)	764
PdmI	GAANNNNTTC	2 cut(s)	802, 1103
PfeI	GAWTC	1 cut(s)	29
PkrI	GCNGC	7 cut(s)	70, 289, 311, 362, 505, 922, 1307
PleI	GAGTC	1 cut(s)	1071
PpsI	GAGTC	1 cut(s)	1071
PsiI	TTATAA	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	220, 265
PspFI	CCCAGC	1 cut(s)	195
PspGI	CCWGG	2 cut(s)	220, 265
PspN4I	GGNNCC	5 cut(s)	6, 201, 568, 1044, 1318
PstI	CTGCAG	2 cut(s)	508, 1310
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	199, 1273
RsaI	GTAC	3 cut(s)	173, 230, 545
RsaNI	GTAC	3 cut(s)	172, 229, 544
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	1 cut(s)	785
SatI	GCNGC	7 cut(s)	69, 288, 310, 361, 504, 921, 1306
Sau3AI	GATC	4 cut(s)	199, 207, 1005, 1273
ScaI	AGTACT	2 cut(s)	173, 545
SchI	GAGTC	1 cut(s)	1072
ScrFI	CCNGG	2 cut(s)	222, 267
SduI	GDGCHC	1 cut(s)	1061
SfaNI	GCATC	3 cut(s)	529, 597, 964
SfcI	CTRYAG	4 cut(s)	504, 762, 1071, 1306
SmiMI	CAYNNNNRTG	1 cut(s)	764
SmlI	CTYRAG	4 cut(s)	159, 391, 739, 1054
SmoI	CTYRAG	4 cut(s)	159, 391, 739, 1054
Sse9I	AATT	6 cut(s)	90, 184, 684, 821, 840, 860
SsiI	CCGC	8 cut(s)	69, 350, 399, 431, 452, 748, 1225, 1321
SspI	AATATT	2 cut(s)	598, 640
SspMI	CTAG	5 cut(s)	242, 440, 795, 911, 962
StyD4I	CCNGG	2 cut(s)	220, 265
TaaI	ACNGT	4 cut(s)	171, 719, 763, 1072
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	791
TaqII	GACCGA	1 cut(s)	1007
TasI	AATT	6 cut(s)	90, 184, 684, 821, 840, 860
TatI	WGTACW	3 cut(s)	171, 228, 543
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	29
Tru1I	TTAA	1 cut(s)	785
Tru9I	TTAA	1 cut(s)	785
TscAI	CASTG	5 cut(s)	513, 631, 724, 766, 1333
TseFI	GTSAC	2 cut(s)	113, 495
TseI	GCWGC	6 cut(s)	287, 309, 360, 503, 920, 1305
Tsp45I	GTSAC	2 cut(s)	113, 495
TspDTI	ATGAA	7 cut(s)	423, 446, 852, 887, 1105, 1138, 1268
TspGWI	ACGGA	1 cut(s)	559
TspRI	CASTG	5 cut(s)	513, 631, 724, 766, 1333
XceI	RCATGY	1 cut(s)	274
XmiI	GTMKAC	1 cut(s)	675
XmnI	GAANNNNTTC	2 cut(s)	802, 1103
XspI	CTAG	5 cut(s)	242, 440, 795, 911, 962
ZrmI	AGTACT	2 cut(s)	173, 545
Zsp2I	ATGCAT	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.