Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035686.1

Orthogroup ID

OG0004979

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1959

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035686.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

gtttggctggtggcggccacgtcactacgccatccctcttatggccgatctgcatcttggttggagcttgtagggctatttggagttaagatgggtaggatagctgtggcagcaattgtgagcttgtgggtagttcccatctcaatccttgtcaatcacattgttcctgaaccttacatggatgagattttccatgtgcctcaggctcaacagtactgcaaaggcaatttcagaagctgggatcccatgatcactactcctcctggcctgtattatctttcactagcccatgttgcttgtttgttgtttccaggcacgtctttcgtaaaagctgcctcttcgttttctgaaggctgctccaccgcgattcttcgctcctcgaatggtgttttggcagtggtttgcagtgttctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0019538 GO:0031984 GO:0032501 GO:0032502 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0070085 GO:0071704 GO:0098827 GO:0099402 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

DIE2_ALG10

Protein Analysis

138

Amino Acids

14.95

Weight (kDa)

8.45

Isoelectric Point (pI)

54.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004979)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02410
fragaria_vesca	FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910 FvH4_6g13910
malus_domestica	MD04G1127500.v1.1 MD12G1140900.v1.1
prunus_persica	Prupe.6G254200_v2.0.a1 Prupe.6G254200_v2.0.a1
pyrus_communis	pycom04g11440 pycom126g00050 pycom12g13580
rosa_chinensis	RchiOBHm_Chr3g0466751
rosa_laevigata	RLG00000024556
rosa_multiflora	Rmu_sc0026659.1_g000002 Rmu_sc0035686.1_g000001
rosa_roxburghii	Rroxscaffold_6G00414200
rosa_rugosa	Rorug03G0083600 Rorug03G0083700
rosa_samantha	Rh3AG130700 Rh3BG151700 Rh3CG151600 Rh3DG152400
rosa_wichuraiana	Rw3G012330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	365
AciI	CCGC	2 cut(s)	14, 363
AclWI	GGATC	2 cut(s)	236, 249
AcoI	YGGCCR	2 cut(s)	15, 43
AcuI	CTGAAG	1 cut(s)	369
AfaI	GTAC	1 cut(s)	215
AfiI	CCNNNNNNNGG	1 cut(s)	41
AjiI	CACGTC	2 cut(s)	21, 318
AjnI	CCWGG	2 cut(s)	262, 310
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	5 cut(s)	67, 104, 123, 237, 332
AluI	AGCT	5 cut(s)	67, 104, 123, 237, 332
AlwI	GGATC	2 cut(s)	236, 249
AlwNI	CAGNNNCTG	1 cut(s)	237
AoxI	GGCC	3 cut(s)	15, 43, 265
ApeKI	GCWGC	3 cut(s)	110, 332, 354
AxyI	CCTNAGG	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	241
BbvI	GCAGC	3 cut(s)	122, 319, 341
BccI	CCATC	3 cut(s)	39, 85, 146
BcgI	CGANNNNNNTGC	2 cut(s)	304, 338
BciT130I	CCWGG	2 cut(s)	264, 312
BclI	TGATCA	1 cut(s)	249
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	4 cut(s)	15, 111, 333, 355
BlsI	GCNGC	4 cut(s)	16, 112, 334, 356
BmcAI	AGTACT	1 cut(s)	215
Bme1390I	CCNGG	2 cut(s)	264, 312
BmgBI	CACGTC	2 cut(s)	21, 318
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	264, 312
BmsI	GCATC	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	244, 274
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse21I	CCTNAGG	1 cut(s)	201
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	2 cut(s)	264, 312
BseGI	GGATG	2 cut(s)	31, 187
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	2 cut(s)	249, 367
BseXI	GCAGC	3 cut(s)	122, 319, 341
BseYI	CCCAGC	1 cut(s)	237
Bsh1236I	CGCG	1 cut(s)	365
BshFI	GGCC	3 cut(s)	17, 45, 267
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	3 cut(s)	17, 45, 267
Bsp143I	GATC	3 cut(s)	47, 241, 249
BspACI	CCGC	2 cut(s)	14, 363
BspANI	GGCC	3 cut(s)	17, 45, 267
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	365
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	2 cut(s)	236, 249
BssMI	GATC	3 cut(s)	47, 241, 249
Bst2UI	CCWGG	2 cut(s)	264, 312
Bst4CI	ACNGT	1 cut(s)	213
Bst6I	CTCTTC	1 cut(s)	343
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	2 cut(s)	31, 187
BstFNI	CGCG	1 cut(s)	365
BstKTI	GATC	3 cut(s)	50, 244, 252
BstMBI	GATC	3 cut(s)	47, 241, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	73, 110, 293
BstNI	CCWGG	2 cut(s)	264, 312
BstSCI	CCNGG	2 cut(s)	262, 310
BstUI	CGCG	1 cut(s)	365
BstV1I	GCAGC	3 cut(s)	122, 319, 341
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	17, 45, 267
BtrI	CACGTC	2 cut(s)	21, 318
BtsCI	GGATG	2 cut(s)	31, 187
BtsI	GCAGTG	2 cut(s)	402, 412
BtsIMutI	CAGTG	2 cut(s)	402, 412
CaiI	CAGNNNCTG	1 cut(s)	237
Csp6I	GTAC	1 cut(s)	214
CviAII	CATG	4 cut(s)	178, 194, 247, 290
CviQI	GTAC	1 cut(s)	214
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	3 cut(s)	49, 243, 251
DpnII	GATC	3 cut(s)	47, 241, 249
EaeI	YGGCCR	2 cut(s)	15, 43
Eam1104I	CTCTTC	1 cut(s)	343
EarI	CTCTTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	369
Eco81I	CCTNAGG	1 cut(s)	201
EcoRII	CCWGG	2 cut(s)	262, 310
FaeI	CATG	4 cut(s)	181, 197, 250, 293
FaiI	YATR	5 cut(s)	42, 179, 195, 248, 291
FatI	CATG	4 cut(s)	177, 193, 246, 289
FbaI	TGATCA	1 cut(s)	249
Fnu4HI	GCNGC	4 cut(s)	15, 111, 333, 355
FokI	GGATG	2 cut(s)	18, 194
Fsp4HI	GCNGC	4 cut(s)	15, 111, 333, 355
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	4 cut(s)	15, 111, 333, 355
GsaI	CCCAGC	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	17, 45, 267
Hin1II	CATG	4 cut(s)	181, 197, 250, 293
HinfI	GANTC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	233, 349
Hpy188III	TCNNGA	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	344
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4IV	ACGT	2 cut(s)	20, 317
HpyCH4V	TGCA	3 cut(s)	53, 219, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	73, 110, 293
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	2 cut(s)	20, 317
Hsp92II	CATG	4 cut(s)	181, 197, 250, 293
Ksp22I	TGATCA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	47, 241, 249
LmnI	GCTCC	3 cut(s)	64, 362, 380
LpnPI	CCDG	8 cut(s)	180, 188, 223, 249, 276, 281, 297, 324
Lsp1109I	GCAGC	3 cut(s)	122, 319, 341
LweI	GCATC	1 cut(s)	62
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	20, 317
MaeIII	GTNAC	1 cut(s)	21
MalI	GATC	3 cut(s)	49, 243, 251
MboI	GATC	3 cut(s)	47, 241, 249
MboII	GAAGA	2 cut(s)	330, 362
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	2 cut(s)	114, 226
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	5 cut(s)	46, 210, 270, 346, 388
MseI	TTAA	1 cut(s)	87
MspR9I	CCNGG	2 cut(s)	264, 312
MunI	CAATTG	1 cut(s)	114
MvaI	CCWGG	2 cut(s)	264, 312
MvnI	CGCG	1 cut(s)	365
MwoI	GCNNNNNNNGC	3 cut(s)	73, 110, 293
NdeII	GATC	3 cut(s)	47, 241, 249
NlaIII	CATG	4 cut(s)	181, 197, 250, 293
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	21
PfeI	GAWTC	1 cut(s)	367
PkrI	GCNGC	4 cut(s)	16, 112, 334, 356
Psp6I	CCWGG	2 cut(s)	262, 310
PspFI	CCCAGC	1 cut(s)	237
PspGI	CCWGG	2 cut(s)	262, 310
PspN4I	GGNNCC	1 cut(s)	243
PstNI	CAGNNNCTG	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	241
RsaI	GTAC	1 cut(s)	215
RsaNI	GTAC	1 cut(s)	214
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	4 cut(s)	15, 111, 333, 355
Sau3AI	GATC	3 cut(s)	47, 241, 249
ScaI	AGTACT	1 cut(s)	215
ScrFI	CCNGG	2 cut(s)	264, 312
SetI	ASST	8 cut(s)	23, 69, 106, 125, 175, 239, 320, 334
SfaNI	GCATC	1 cut(s)	62
Sse9I	AATT	2 cut(s)	114, 226
SsiI	CCGC	2 cut(s)	14, 363
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	262, 310
TaaI	ACNGT	1 cut(s)	213
TaiI	ACGT	2 cut(s)	23, 320
TaqI	TCGA	1 cut(s)	380
TasI	AATT	2 cut(s)	114, 226
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	2 cut(s)	402, 412
TseFI	GTSAC	1 cut(s)	21
TseI	GCWGC	3 cut(s)	110, 332, 354
Tsp45I	GTSAC	1 cut(s)	21
TspRI	CASTG	2 cut(s)	402, 412
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XspI	CTAG	1 cut(s)	284
ZrmI	AGTACT	1 cut(s)	215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.