Rorug03G0083600
NAC Family

Dol-P-Glc Glc(2)Man(9)GlcNAc(2)-PP-Dol

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
6485188 .. 6490674
5487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0083600.1

Sequence Viewer

Length: 1797 bp
ATGTACTCCAACTCAGGCGGGAAATTCACCGATCAAGAACACCCAGTTGAGGAGGTTTACAGAAGAAGAAAACCCAGAAAGCCCACTCCAGATGAAGAACCCTTAAGGGAATCGAGTTCGAGTCGAAAAGAGAAGCTTAGGGTGAGTTTGGCTGCTGCTGCTCCGGTTAAGCGAGTCAGTTGGAACCGTTTTCTTTCCACAAGAGGGAGGACAAGTATTGCTGTTGGTGCTTGCTTGGACTATCAGCCTCCTCAGAAGAAGGCTAAAAGGAAAGGAAGACCTCCTCGTCCCAAAAGTAAGTACAACTTTGAAAAGGAACGAGCTTACTTTGAGAAGCTTGATGAAGAAGAATTGATAGAGGAGAGCCCCTCGCCAATACCCCGCACATGGGTTGCTGGAATCCCAAAGGGGAATGTTGAAATACCGAAGTTGTGCTCAGCATTAGAGAAATGGTTATTATCCAAGAAGTTGAATTTCGGTTTAGGGTCTTCCAACACATTGGCTAGGATCCTACAATCTTCAGCCATGCGGCCCTCGCCCATTGGTGGTATCAATTTTGAACCTTCAAGTTTGAAAACCCCAGAAAGATCTTCTAGAGTCAATTCTCGCTTGTCTTCTGGCCAAATTAGTTTTGATTTGAGTTTGCTCGATGGAAGTGTGCATGAAAGGAGCACCCCCAAATCACTTCCCGGTGTGGGCAATGAGGGTTGTGAAGATATAGATGCTGCTGTAAAAGAACTCTCTTTGGTATCGACTTCTGAGGAGTTGGATCGATTTAATGCTCTGTTAGAAGTTTGTGGCCAGTCATCTCCCTCAAAATTACAGGATGTATTTTCCAAATATTGTGATCCAGAAGAGATTGAAAAAGTTGGAGAAGGGACATATGGAGAAGCTTTCAAGGTTGGCAACTGCGTTTGCAAAATAGTTCCTATTGATGGCAACTTACGAGTGAATGGGGTTGAAGTGCAAAAGAGATCTGAAGAATTGCTTGAGGAAGTCGTGCTTTCCCGCACTCTTAATTACTTGAGAGGAAACAATGATAATGTTCAGAATGTATGCCCAACATTTATAGAAACAAAAGATTTGAGGGTGTGCCAAGGCTCCTATGACGCTGCCTTGATCAAAGCATGGGAAGCTTGGGATGAAAACTGTGGTTCAGAAAATGATCACCCTGAGGCGTTTCCAGAGAACCAGTTCTATGTCGTGTTTGTTTTAGAGCATGGTGGCAAAGATCTGGAAAGCTTTGTACTTCTGAACTTTGACGAGGCAAGGAGTTTATTAGTACAGGTTACGGCTGCCCTTGCTGTGGCTGAAGCGGCATATGAATTTGAGCACCGTGATCTCCACTGGGGAAACATACTTTTGAGAAGGAGTGGTTCAGTTACAATGCAGTTCACTCTTGAAGGAAAGCAGATGCTCATACGCACATTTGGATTAGCAATATCAATCATTGATTTCACTCTTTCAAGAATCAATACGGGCGAAGCCATACTCTTTCTAGACCTATCTTCAGATCCTGAGCTTTTTAATGGTCCAAAAAGCGATAAACAATCAGAAACTTACAAGAAAATGAAGAAGGTAACACAAGACCACTGGAAGGAAAGCTTCCCTAGAACAAATGTGTTGTGGTTGCTGTACTTGGTGGATATATTACTCCTAAACAAAGCATTTGATCGTACTTCGAAGGATGCGAGAGATTTGCGCGCGTTGAAGAAGCGGCTTGATCAATATCAGTCAGCAAGAGAAGCACTTTTTGATCCTTGTTTCAGTGACTTGTTTGTTGGTTGTGATAGTTGA

Protein Analysis

598

Amino Acids

67.33

Weight (kDa)

6.15

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Haspin_kinase PF12330 261 - 577 1.8e-51 Haspin like kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 285
AccII CGCG 2 cut(s) 1704, 1706
AciI CCGC 6 cut(s) 18, 382, 529, 1009, 1316, 1717
AclWI GGATC 6 cut(s) 502, 515, 777, 842, 1508, 1751
AcoI YGGCCR 2 cut(s) 619, 799
AcsI RAATTY 3 cut(s) 23, 472, 1325
AcuI CTGAAG 4 cut(s) 504, 999, 1332, 1494
AfaI GTAC 6 cut(s) 5, 302, 1248, 1284, 1637, 1678
AfiI CCNNNNNNNGG 9 cut(s) 49, 204, 387, 388, 545, 695, 935, 1306, 1597
AflII CTTAAG 1 cut(s) 103
AluBI AGCT 8 cut(s) 136, 323, 337, 893, 1136, 1242, 1522, 1605
AluI AGCT 8 cut(s) 136, 323, 337, 893, 1136, 1242, 1522, 1605
Alw21I GWGCWC 3 cut(s) 437, 674, 1335
AlwI GGATC 6 cut(s) 502, 515, 777, 842, 1508, 1751
AlwNI CAGNNNCTG 1 cut(s) 1517
AoxI GGCC 3 cut(s) 530, 619, 799
ApeKI GCWGC 6 cut(s) 152, 155, 158, 725, 1112, 1295
ApoI RAATTY 3 cut(s) 23, 472, 1325
Asp700I GAANNNNTTC 1 cut(s) 1193
AspLEI GCGC 2 cut(s) 1704, 1706
AspS9I GGNCC 2 cut(s) 531, 1532
AsuC2I CCSGG 1 cut(s) 690
AsuHPI GGTGA 3 cut(s) 19, 154, 1160
AsuII TTCGAA 1 cut(s) 1682
AvaII GGWCC 1 cut(s) 1532
AxyI CCTNAGG 1 cut(s) 1173
BalI TGGCCA 2 cut(s) 621, 801
BamHI GGATCC 1 cut(s) 507
BanII GRGCYC 1 cut(s) 368
BbsI GAAGAC 3 cut(s) 283, 480, 606
Bbv12I GWGCWC 3 cut(s) 437, 674, 1335
BbvI GCAGC 6 cut(s) 139, 142, 145, 712, 1099, 1282
BccI CCATC 2 cut(s) 644, 929
BceAI ACGGC 1 cut(s) 1308
BcgI CGANNNNNNTGC 2 cut(s) 1681, 1715
BclI TGATCA 3 cut(s) 1119, 1165, 1723
BcnI CCSGG 1 cut(s) 690
BfaI CTAG 4 cut(s) 504, 594, 1499, 1611
BfrI CTTAAG 1 cut(s) 103
BglII AGATCT 3 cut(s) 587, 974, 1231
BisI GCNGC 9 cut(s) 153, 156, 159, 530, 726, 1113, 1296, 1317, 1718
BlpI GCTNAGC 1 cut(s) 436
BlsI GCNGC 9 cut(s) 154, 157, 160, 531, 727, 1114, 1297, 1318, 1719
Bme1390I CCNGG 1 cut(s) 690
Bme18I GGWCC 1 cut(s) 1532
BmgT120I GGNCC 2 cut(s) 531, 1532
BmiI GGNNCC 3 cut(s) 185, 509, 1102
BmrFI CCNGG 1 cut(s) 690
BmrI ACTGGG 2 cut(s) 38, 1357
BmsI GCATC 3 cut(s) 712, 1404, 1678
BmuI ACTGGG 2 cut(s) 38, 1357
BpiI GAAGAC 3 cut(s) 283, 480, 606
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 72
Bpu10I CCTNAGC 2 cut(s) 137, 1518
Bpu1102I GCTNAGC 1 cut(s) 436
Bpu14I TTCGAA 1 cut(s) 1682
BpuEI CTTGAG 2 cut(s) 1010, 1045
BpuMI CCSGG 1 cut(s) 690
Bsa29I ATCGAT 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 1728
BsaJI CCNNGG 1 cut(s) 1096
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 2 cut(s) 199, 229
Bsc4I CCNNNNNNNGG 9 cut(s) 49, 204, 387, 388, 545, 695, 935, 1306, 1597
Bse1I ACTGG 5 cut(s) 44, 802, 1192, 1352, 1598
Bse21I CCTNAGG 1 cut(s) 1173
Bse3DI GCAATG 1 cut(s) 706
Bse8I GATNNNNATC 1 cut(s) 1728
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 1 cut(s) 1096
BseGI GGATG 3 cut(s) 832, 1147, 1693
BseJI GATNNNNATC 1 cut(s) 1728
BseLI CCNNNNNNNGG 9 cut(s) 49, 204, 387, 388, 545, 695, 935, 1306, 1597
BseMI GCAATG 1 cut(s) 706
BseMII CTCAG 6 cut(s) 27, 266, 450, 750, 1164, 1509
BseNI ACTGG 5 cut(s) 44, 802, 1192, 1352, 1598
BsePI GCGCGC 1 cut(s) 1702
BseRI GAGGAG 5 cut(s) 65, 240, 273, 374, 776
BseXI GCAGC 6 cut(s) 139, 142, 145, 712, 1099, 1282
Bsh1236I CGCG 2 cut(s) 1704, 1706
BshFI GGCC 3 cut(s) 532, 621, 801
BshVI ATCGAT 1 cut(s) 772
BsiHKAI GWGCWC 3 cut(s) 437, 674, 1335
BsiSI CCGG 2 cut(s) 164, 690
BslFI GGGAC 2 cut(s) 273, 892
BslI CCNNNNNNNGG 9 cut(s) 49, 204, 387, 388, 545, 695, 935, 1306, 1597
BsmFI GGGAC 2 cut(s) 273, 892
BsnI GGCC 3 cut(s) 532, 621, 801
Bsp119I TTCGAA 1 cut(s) 1682
Bsp1286I GDGCHC 4 cut(s) 368, 437, 674, 1335
Bsp1720I GCTNAGC 1 cut(s) 436
BspACI CCGC 6 cut(s) 18, 382, 529, 1009, 1316, 1717
BspANI GGCC 3 cut(s) 532, 621, 801
BspCNI CTCAG 6 cut(s) 26, 265, 449, 751, 1165, 1510
BspDI ATCGAT 1 cut(s) 772
BspFNI CGCG 2 cut(s) 1704, 1706
BspLI GGNNCC 3 cut(s) 185, 509, 1102
BspPI GGATC 6 cut(s) 502, 515, 777, 842, 1508, 1751
BspT104I TTCGAA 1 cut(s) 1682
BspTI CTTAAG 1 cut(s) 103
BsrDI GCAATG 1 cut(s) 706
BsrI ACTGG 5 cut(s) 44, 802, 1192, 1352, 1598
BssECI CCNNGG 1 cut(s) 1096
BssHII GCGCGC 1 cut(s) 1702
BssT1I CCWWGG 1 cut(s) 1096
Bst4CI ACNGT 3 cut(s) 188, 1151, 1337
Bst6I CTCTTC 1 cut(s) 849
BstAFI CTTAAG 1 cut(s) 103
BstBI TTCGAA 1 cut(s) 1682
BstC8I GCNNGC 2 cut(s) 232, 1704
BstDEI CTNAG 7 cut(s) 13, 137, 252, 436, 759, 1173, 1518
BstF5I GGATG 3 cut(s) 832, 1147, 1693
BstFNI CGCG 2 cut(s) 1704, 1706
BstHHI GCGC 2 cut(s) 1704, 1706
BstMWI GCNNNNNNNGC 7 cut(s) 158, 227, 535, 1133, 1301, 1316, 1745
BstSCI CCNGG 1 cut(s) 688
BstUI CGCG 2 cut(s) 1704, 1706
BstV1I GCAGC 6 cut(s) 139, 142, 145, 712, 1099, 1282
BstV2I GAAGAC 3 cut(s) 283, 480, 606
BstX2I RGATCY 5 cut(s) 507, 587, 974, 1231, 1513
BstXI CCANNNNNNTGG 1 cut(s) 499
BstYI RGATCY 5 cut(s) 507, 587, 974, 1231, 1513
Bsu15I ATCGAT 1 cut(s) 772
Bsu36I CCTNAGG 1 cut(s) 1173
BsuRI GGCC 3 cut(s) 532, 621, 801
BsuTUI ATCGAT 1 cut(s) 772
BtsCI GGATG 3 cut(s) 832, 1147, 1693
BtsIMutI CAGTG 3 cut(s) 1345, 1591, 1774
Cac8I GCNNGC 2 cut(s) 232, 1704
CaiI CAGNNNCTG 1 cut(s) 1517
CfoI GCGC 2 cut(s) 1704, 1706
Cfr13I GGNCC 2 cut(s) 531, 1532
ClaI ATCGAT 1 cut(s) 772
CseI GACGC 1 cut(s) 1118
Csp6I GTAC 6 cut(s) 4, 301, 1247, 1283, 1636, 1677
CviAII CATG 5 cut(s) 387, 526, 662, 1128, 1220
CviQI GTAC 6 cut(s) 4, 301, 1247, 1283, 1636, 1677
DdeI CTNAG 7 cut(s) 13, 137, 252, 436, 759, 1173, 1518
DrdI GACNNNNNNGTC 1 cut(s) 285
DseDI GACNNNNNNGTC 1 cut(s) 285
EaeI YGGCCR 2 cut(s) 619, 799
Eam1104I CTCTTC 1 cut(s) 849
EarI CTCTTC 1 cut(s) 849
Eco130I CCWWGG 1 cut(s) 1096
Eco24I GRGCYC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 1532
Eco57I CTGAAG 4 cut(s) 504, 999, 1332, 1494
Eco81I CCTNAGG 1 cut(s) 1173
EcoT14I CCWWGG 1 cut(s) 1096
EcoT38I GRGCYC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 1096
FaeI CATG 5 cut(s) 390, 529, 665, 1131, 1223
FaqI GGGAC 2 cut(s) 273, 892
FatI CATG 5 cut(s) 386, 525, 661, 1127, 1219
FauI CCCGC 3 cut(s) 11, 389, 1016
FauNDI CATATG 2 cut(s) 883, 1321
FbaI TGATCA 3 cut(s) 1119, 1165, 1723
Fnu4HI GCNGC 9 cut(s) 153, 156, 159, 530, 726, 1113, 1296, 1317, 1718
FokI GGATG 3 cut(s) 839, 1154, 1700
FriOI GRGCYC 1 cut(s) 368
Fsp4HI GCNGC 9 cut(s) 153, 156, 159, 530, 726, 1113, 1296, 1317, 1718
FspBI CTAG 4 cut(s) 504, 594, 1499, 1611
GlaI GCGC 2 cut(s) 1703, 1705
GluI GCNGC 9 cut(s) 153, 156, 159, 530, 726, 1113, 1296, 1317, 1718
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 3 cut(s) 532, 621, 801
HapII CCGG 2 cut(s) 164, 690
HgaI GACGC 1 cut(s) 1118
HhaI GCGC 2 cut(s) 1704, 1706
Hin1II CATG 5 cut(s) 390, 529, 665, 1131, 1223
Hin6I GCGC 2 cut(s) 1702, 1704
HinP1I GCGC 2 cut(s) 1702, 1704
HindIII AAGCTT 6 cut(s) 134, 335, 891, 1134, 1240, 1603
HinfI GANTC 6 cut(s) 110, 121, 174, 399, 597, 1470
HpaII CCGG 2 cut(s) 164, 690
HphI GGTGA 3 cut(s) 19, 154, 1160
Hpy166II GTNNAC 2 cut(s) 58, 1395
Hpy188I TCNGA 8 cut(s) 255, 760, 979, 1050, 1159, 1254, 1513, 1555
Hpy8I GTNNAC 2 cut(s) 58, 1395
HpyAV CCTTC 8 cut(s) 253, 573, 869, 1362, 1397, 1570, 1591, 1678
HpyCH4III ACNGT 3 cut(s) 188, 1151, 1337
HpyCH4V TGCA 4 cut(s) 661, 918, 967, 1390
HpyF10VI GCNNNNNNNGC 7 cut(s) 158, 227, 535, 1133, 1301, 1316, 1745
HpyF3I CTNAG 7 cut(s) 13, 137, 252, 436, 759, 1173, 1518
Hsp92II CATG 5 cut(s) 390, 529, 665, 1131, 1223
HspAI GCGC 2 cut(s) 1702, 1704
Ksp22I TGATCA 3 cut(s) 1119, 1165, 1723
LmnI GCTCC 3 cut(s) 166, 669, 1106
Lsp1109I GCAGC 6 cut(s) 139, 142, 145, 712, 1099, 1282
LweI GCATC 3 cut(s) 712, 1404, 1678
MaeI CTAG 4 cut(s) 504, 594, 1499, 1611
MaeIII GTNAC 4 cut(s) 1288, 1381, 1579, 1769
MflI RGATCY 5 cut(s) 507, 587, 974, 1231, 1513
MhlI GDGCHC 4 cut(s) 368, 437, 674, 1335
MlsI TGGCCA 2 cut(s) 621, 801
MluNI TGGCCA 2 cut(s) 621, 801
MlyI GAGTC 3 cut(s) 130, 183, 606
MmeI TCCRAC 5 cut(s) 33, 161, 516, 747, 850
Mox20I TGGCCA 2 cut(s) 621, 801
MroXI GAANNNNTTC 1 cut(s) 1193
MscI TGGCCA 2 cut(s) 621, 801
MseI TTAA 5 cut(s) 104, 168, 777, 1017, 1527
Msp20I TGGCCA 2 cut(s) 621, 801
MspCI CTTAAG 1 cut(s) 103
MspI CCGG 2 cut(s) 164, 690
MspR9I CCNGG 1 cut(s) 690
MvnI CGCG 2 cut(s) 1704, 1706
MwoI GCNNNNNNNGC 7 cut(s) 158, 227, 535, 1133, 1301, 1316, 1745
NciI CCSGG 1 cut(s) 690
NdeI CATATG 2 cut(s) 883, 1321
NlaIII CATG 5 cut(s) 390, 529, 665, 1131, 1223
NlaIV GGNNCC 3 cut(s) 185, 509, 1102
NmuCI GTSAC 1 cut(s) 1769
NspV TTCGAA 1 cut(s) 1682
PauI GCGCGC 1 cut(s) 1702
PcsI WCGNNNNNNNCGW 1 cut(s) 1688
PdmI GAANNNNTTC 1 cut(s) 1193
PfeI GAWTC 3 cut(s) 110, 399, 1470
PkrI GCNGC 9 cut(s) 154, 157, 160, 531, 727, 1114, 1297, 1318, 1719
PleI GAGTC 3 cut(s) 129, 182, 605
PpsI GAGTC 3 cut(s) 129, 182, 605
PspN4I GGNNCC 3 cut(s) 185, 509, 1102
PspPI GGNCC 2 cut(s) 531, 1532
PstNI CAGNNNCTG 1 cut(s) 1517
PsuI RGATCY 5 cut(s) 507, 587, 974, 1231, 1513
PteI GCGCGC 1 cut(s) 1702
RsaI GTAC 6 cut(s) 5, 302, 1248, 1284, 1637, 1678
RsaNI GTAC 6 cut(s) 4, 301, 1247, 1283, 1636, 1677
SaqAI TTAA 5 cut(s) 104, 168, 777, 1017, 1527
SatI GCNGC 9 cut(s) 153, 156, 159, 530, 726, 1113, 1296, 1317, 1718
Sau96I GGNCC 2 cut(s) 531, 1532
SchI GAGTC 3 cut(s) 130, 183, 606
ScrFI CCNGG 1 cut(s) 690
SduI GDGCHC 4 cut(s) 368, 437, 674, 1335
SfaNI GCATC 3 cut(s) 712, 1404, 1678
SfuI TTCGAA 1 cut(s) 1682
SinI GGWCC 1 cut(s) 1532
SmlI CTYRAG 3 cut(s) 103, 989, 1024
SmoI CTYRAG 3 cut(s) 103, 989, 1024
SsiI CCGC 6 cut(s) 18, 382, 529, 1009, 1316, 1717
SspI AATATT 1 cut(s) 842
SspMI CTAG 4 cut(s) 504, 594, 1499, 1611
StyD4I CCNGG 1 cut(s) 688
StyI CCWWGG 1 cut(s) 1096
TaaI ACNGT 3 cut(s) 188, 1151, 1337
TaqI TCGA 7 cut(s) 113, 119, 124, 648, 752, 772, 1682
TatI WGTACW 5 cut(s) 3, 300, 1246, 1282, 1635
TauI GCSGC 3 cut(s) 532, 1319, 1720
TfiI GAWTC 3 cut(s) 110, 399, 1470
Tru1I TTAA 5 cut(s) 104, 168, 777, 1017, 1527
Tru9I TTAA 5 cut(s) 104, 168, 777, 1017, 1527
TscAI CASTG 3 cut(s) 1352, 1598, 1774
TseFI GTSAC 1 cut(s) 1769
TseI GCWGC 6 cut(s) 152, 155, 158, 725, 1112, 1295
Tsp45I GTSAC 1 cut(s) 1769
TspDTI ATGAA 6 cut(s) 108, 357, 678, 1158, 1338, 1586
TspRI CASTG 3 cut(s) 1352, 1598, 1774
Vha464I CTTAAG 1 cut(s) 103
VpaK11BI GGWCC 1 cut(s) 1532
XapI RAATTY 3 cut(s) 23, 472, 1325
XbaI TCTAGA 2 cut(s) 593, 1498
XmnI GAANNNNTTC 1 cut(s) 1193
XspI CTAG 4 cut(s) 504, 594, 1499, 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.