AT5G02650

telomerase RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007040
Physical Location & Seq
Forward (+)
597504 .. 599786
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G02650.1

Sequence Viewer

Length: 681 bp
ATGGTAAAAAGAAATCAGTTGCGTATGAAGAAGAACAGTGCTATCTATCTAGATTCTAGAGATGTTTTCACTTCTTGTCTAATGTCTACTTACTATTTATTACGTGGGGTTTTCTTGCAGGAACTTGCGGCTACTTGTGCCACTGCGGTTAAGTCAACTACTTACTATCTTGGATCCTTGCCCTCCAAAACTGCTCTGCTAAAACGTTGCTATACATGGAAGACCATGAATGAATCTAGAGGAGAGAAGCTCAGCAACGGTCAACAGAGCATAACAAATGCGTATGGCTTCAGTGACGATCCCGGGCCATTTCTTAGATTTCTGAGAGAGACAGAGTGGCTGAATGAGAATGATCATAGACATTGTTTCTCTCTTGGTATCAAGAGAGGAGATGGTGAAAGTAATCTGAATGTTGATTTGCGCAGAAAGAGACTTCATGAACCTGATGGTGTGCATGAAGCACAGACCCTCTCACTGACCTATCAAGACTCTAGCGGCCAACTCCATGTACCGACCGAAACAGGGGAAGCTCTGTTGAGAAAGCTGGAGACCACAATCTCGGACATAGTTTCAGGTTGTTTTTGCAATGTAGGACAAGTGTTTGTTGACAGCTGTAGAAGTGAGCTAAGAGGACCTCCTCCTCATCCTCCTGCAAATATGAACAACTCAAGATGCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000723 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006278 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007004 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010605 GO:0010608 GO:0010629 GO:0010833 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0018130 GO:0019219 GO:0019220 GO:0019222 GO:0019438 GO:0019439 GO:0019899 GO:0019902 GO:0019903 GO:0031323 GO:0031326 GO:0031329 GO:0031503 GO:0031625 GO:0032200 GO:0032204 GO:0032210 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0035303 GO:0042162 GO:0042592 GO:0042826 GO:0042886 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044389 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051052 GO:0051128 GO:0051168 GO:0051169 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0051721 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1904356 GO:1990904 GO:2000112 GO:2000278
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
EST1 EST1_DNA_bind PIN_4

Protein Analysis

226

Amino Acids

25.51

Weight (kDa)

8.4

Isoelectric Point (pI)

47.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 422
AccI GTMKAC 1 cut(s) 86
AciI CCGC 3 cut(s) 128, 146, 495
AclI AACGTT 1 cut(s) 205
AclWI GGATC 3 cut(s) 168, 181, 293
AcoI YGGCCR 1 cut(s) 496
AcuI CTGAAG 1 cut(s) 274
AfaI GTAC 1 cut(s) 510
AfiI CCNNNNNNNGG 1 cut(s) 522
AluBI AGCT 5 cut(s) 250, 530, 544, 612, 625
AluI AGCT 5 cut(s) 250, 530, 544, 612, 625
Alw26I GTCTC 3 cut(s) 323, 424, 542
AlwI GGATC 3 cut(s) 168, 181, 293
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 2 cut(s) 305, 496
AspLEI GCGC 1 cut(s) 423
AspS9I GGNCC 2 cut(s) 305, 632
AsuC2I CCSGG 2 cut(s) 303, 304
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 632
BamHI GGATCC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 227
BccI CCATC 2 cut(s) 386, 440
BclI TGATCA 1 cut(s) 352
BcnI CCSGG 2 cut(s) 303, 304
BcoDI GTCTC 3 cut(s) 323, 424, 542
BfaI CTAG 4 cut(s) 50, 57, 237, 492
BfmI CTRYAG 1 cut(s) 613
BisI GCNGC 2 cut(s) 129, 496
BlpI GCTNAGC 1 cut(s) 251
BlsI GCNGC 2 cut(s) 130, 497
Bme1390I CCNGG 2 cut(s) 303, 304
Bme18I GGWCC 1 cut(s) 632
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 305, 632
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 303, 304
BmsI GCATC 1 cut(s) 662
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 2 cut(s) 234, 266
BpmI CTGGAG 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 652
BpuMI CCSGG 2 cut(s) 303, 304
BsaAI YACGTR 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 302
Bsc4I CCNNNNNNNGG 1 cut(s) 522
Bse3DI GCAATG 1 cut(s) 592
BseDI CCNNGG 1 cut(s) 302
BseGI GGATG 1 cut(s) 643
BseLI CCNNNNNNNGG 1 cut(s) 522
BseMI GCAATG 1 cut(s) 592
BseMII CTCAG 2 cut(s) 265, 314
BseRI GAGGAG 4 cut(s) 255, 402, 627, 630
Bsh1285I CGRYCG 1 cut(s) 516
BshFI GGCC 2 cut(s) 307, 498
BsiEI CGRYCG 1 cut(s) 516
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 522
BsmAI GTCTC 3 cut(s) 323, 424, 542
BsnI GGCC 2 cut(s) 307, 498
Bso31I GGTCTC 1 cut(s) 542
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 3 cut(s) 173, 298, 352
Bsp1720I GCTNAGC 1 cut(s) 251
BspACI CCGC 3 cut(s) 128, 146, 495
BspANI GGCC 2 cut(s) 307, 498
BspCNI CTCAG 2 cut(s) 264, 315
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 3 cut(s) 168, 181, 293
BspTNI GGTCTC 1 cut(s) 542
BsrDI GCAATG 1 cut(s) 592
BssECI CCNNGG 1 cut(s) 302
BssMI GATC 3 cut(s) 173, 298, 352
Bst4CI ACNGT 2 cut(s) 38, 260
BstBAI YACGTR 1 cut(s) 104
BstDEI CTNAG 4 cut(s) 251, 314, 323, 626
BstF5I GGATG 1 cut(s) 643
BstHHI GCGC 1 cut(s) 423
BstKTI GATC 3 cut(s) 176, 301, 355
BstMAI GTCTC 3 cut(s) 323, 424, 542
BstMBI GATC 3 cut(s) 173, 298, 352
BstMCI CGRYCG 1 cut(s) 516
BstMWI GCNNNNNNNGC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 301, 302
BstSFI CTRYAG 1 cut(s) 613
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuRI GGCC 2 cut(s) 307, 498
BtsCI GGATG 1 cut(s) 643
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 4 cut(s) 43, 141, 298, 473
CciI TCATGA 1 cut(s) 436
CfoI GCGC 1 cut(s) 423
Cfr13I GGNCC 2 cut(s) 305, 632
Cfr9I CCCGGG 1 cut(s) 302
Csp6I GTAC 1 cut(s) 509
CviAII CATG 5 cut(s) 216, 226, 437, 455, 506
CviQI GTAC 1 cut(s) 509
DdeI CTNAG 4 cut(s) 251, 314, 323, 626
DpnI GATC 3 cut(s) 175, 300, 354
DpnII GATC 3 cut(s) 173, 298, 352
EaeI YGGCCR 1 cut(s) 496
Eco31I GGTCTC 1 cut(s) 542
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 1 cut(s) 274
Eco88I CYCGRG 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 632
FaeI CATG 5 cut(s) 219, 229, 440, 458, 509
FatI CATG 5 cut(s) 215, 225, 436, 454, 505
FbaI TGATCA 1 cut(s) 352
FblI GTMKAC 1 cut(s) 86
Fnu4HI GCNGC 2 cut(s) 129, 496
FokI GGATG 1 cut(s) 630
Fsp4HI GCNGC 2 cut(s) 129, 496
FspBI CTAG 4 cut(s) 50, 57, 237, 492
FspI TGCGCA 1 cut(s) 422
GlaI GCGC 1 cut(s) 422
GluI GCNGC 2 cut(s) 129, 496
GsuI CTGGAG 1 cut(s) 566
HaeIII GGCC 2 cut(s) 307, 498
HapII CCGG 1 cut(s) 303
HhaI GCGC 1 cut(s) 423
Hin1II CATG 5 cut(s) 219, 229, 440, 458, 509
Hin6I GCGC 1 cut(s) 421
HinP1I GCGC 1 cut(s) 421
HincII GTYRAC 3 cut(s) 156, 263, 607
HindII GTYRAC 3 cut(s) 156, 263, 607
HinfI GANTC 3 cut(s) 53, 233, 488
HpaII CCGG 1 cut(s) 303
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 4 cut(s) 87, 156, 263, 607
Hpy188I TCNGA 3 cut(s) 324, 408, 562
Hpy188III TCNNGA 7 cut(s) 50, 57, 237, 382, 437, 485, 669
Hpy8I GTNNAC 4 cut(s) 87, 156, 263, 607
HpyCH4III ACNGT 2 cut(s) 38, 260
HpyCH4IV ACGT 2 cut(s) 103, 205
HpyCH4V TGCA 4 cut(s) 118, 454, 585, 653
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 4 cut(s) 251, 314, 323, 626
HpySE526I ACGT 2 cut(s) 103, 205
Hsp92II CATG 5 cut(s) 219, 229, 440, 458, 509
HspAI GCGC 1 cut(s) 421
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 173, 298, 352
LpnPI CCDG 7 cut(s) 104, 316, 456, 507, 530, 558, 663
LweI GCATC 1 cut(s) 662
MaeI CTAG 4 cut(s) 50, 57, 237, 492
MaeII ACGT 2 cut(s) 103, 205
MaeIII GTNAC 1 cut(s) 293
MalI GATC 3 cut(s) 175, 300, 354
MboI GATC 3 cut(s) 173, 298, 352
MboII GAAGA 3 cut(s) 40, 43, 232
MflI RGATCY 1 cut(s) 173
MlyI GAGTC 1 cut(s) 482
MnlI CCTC 9 cut(s) 193, 233, 380, 479, 623, 645, 648, 651, 657
MseI TTAA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 612
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 303, 304
MwoI GCNNNNNNNGC 1 cut(s) 137
NciI CCSGG 2 cut(s) 303, 304
NdeII GATC 3 cut(s) 173, 298, 352
NlaIII CATG 5 cut(s) 219, 229, 440, 458, 509
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 293
NsbI TGCGCA 1 cut(s) 422
PagI TCATGA 1 cut(s) 436
PfeI GAWTC 2 cut(s) 53, 233
PkrI GCNGC 2 cut(s) 130, 497
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Ppu21I YACGTR 1 cut(s) 104
PpuMI RGGWCCY 1 cut(s) 632
Psp1406I AACGTT 1 cut(s) 205
Psp5II RGGWCCY 1 cut(s) 632
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 2 cut(s) 305, 632
PspPPI RGGWCCY 1 cut(s) 632
PsuI RGATCY 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 612
RsaI GTAC 1 cut(s) 510
RsaNI GTAC 1 cut(s) 509
SaqAI TTAA 1 cut(s) 150
SatI GCNGC 2 cut(s) 129, 496
Sau3AI GATC 3 cut(s) 173, 298, 352
Sau96I GGNCC 2 cut(s) 305, 632
SchI GAGTC 1 cut(s) 482
ScrFI CCNGG 2 cut(s) 303, 304
SfaNI GCATC 1 cut(s) 662
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 1 cut(s) 632
SmaI CCCGGG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 667
SmoI CTYRAG 1 cut(s) 667
SsiI CCGC 3 cut(s) 128, 146, 495
SspMI CTAG 4 cut(s) 50, 57, 237, 492
StyD4I CCNGG 2 cut(s) 301, 302
TaaI ACNGT 2 cut(s) 38, 260
TaiI ACGT 2 cut(s) 106, 208
TaqII GACCGA 1 cut(s) 530
TauI GCSGC 2 cut(s) 131, 498
TfiI GAWTC 2 cut(s) 53, 233
Tru1I TTAA 1 cut(s) 150
Tru9I TTAA 1 cut(s) 150
TscAI CASTG 4 cut(s) 43, 148, 298, 480
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 7 cut(s) 41, 242, 246, 425, 453, 471, 674
TspMI CCCGGG 1 cut(s) 302
TspRI CASTG 4 cut(s) 43, 148, 298, 480
VpaK11BI GGWCC 1 cut(s) 632
XbaI TCTAGA 3 cut(s) 49, 56, 236
XmaI CCCGGG 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 86
XspI CTAG 4 cut(s) 50, 57, 237, 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.