Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Forward (+)

19997063 .. 19997835

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGGTGGATGTGACGGCAACGGAAACCTTCATGAGGAGAAGTTCAGTACACCAATGCCTTGGATTGGCATGTATGTAGCAGCAGCATCCTTTGCCTGCCTGATTGCAATGGCTGCAGATGTAATACTCGGCTTTCGACACCATAAACTCTGGTTTCCTTCCAAATTCTTCTCCATCAATGCTACTACTCTCACCTTGCTAGGAGTGGCTATCAAACTATCAGTTGATCTCAACACTCCCATGCCCAACAGCCATGATCAGCTTGCGAAGCTCAGCAGTTCAGTCTTCATCTGCACGGCAATGTCCAACTCCATGCCTTCCCTTGGAGCCATGGAGAATGAAGAAATGTTCATGAATGTGATTGCTTTAGGGATTCTAGTCATCACCCTTGTGGTCAATATATGCATCCAACTAGCTACTGGCGCGATCTTTGTGTTCTGTAAAGAACATGTTGCAATTATGTTTATTATTTTTGTTCTACTCATCATGCTGATTTTCTCTGCTATAGTTGTTCCAACCACAAAGAATTACCTAGAAAAGAAGTACAATAAGAGGCATCAGTTGGCTTTGAAAGAGGGTGCAAACCAAATAATGAAGGCTGGGAAACTTAGAGAGGCATTGACTAAACATTGGGTAATGGCTCATACTTCTAGTCCCCAATTCGTGATGGGCCGCTCGGTCATATGCACTGCTTCTGGAGCTTTTGTCTTCTCAGCACCATGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.5

Weight (kDa)

8.85

Isoelectric Point (pI)

38.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	675
AccII	CGCG	1 cut(s)	425
AciI	CCGC	1 cut(s)	673
AcsI	RAATTY	1 cut(s)	164
AfaI	GTAC	2 cut(s)	49, 545
AfiI	CCNNNNNNNGG	3 cut(s)	34, 65, 323
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	1 cut(s)	571
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	4 cut(s)	262, 271, 416, 701
AluI	AGCT	4 cut(s)	262, 271, 416, 701
AoxI	GGCC	1 cut(s)	670
ApeKI	GCWGC	3 cut(s)	80, 83, 113
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	2 cut(s)	184, 376
BbsI	GAAGAC	2 cut(s)	277, 700
BbvI	GCAGC	3 cut(s)	92, 95, 100
BccI	CCATC	2 cut(s)	182, 661
BceAI	ACGGC	2 cut(s)	31, 312
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	5 cut(s)	200, 377, 413, 533, 651
BfmI	CTRYAG	2 cut(s)	114, 504
BisI	GCNGC	4 cut(s)	81, 84, 114, 673
BlpI	GCTNAGC	1 cut(s)	272
BlsI	GCNGC	4 cut(s)	82, 85, 115, 674
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	3 cut(s)	95, 414, 565
BpiI	GAAGAC	2 cut(s)	277, 700
BpmI	CTGGAG	1 cut(s)	717
Bpu1102I	GCTNAGC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	59, 322, 330
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	3 cut(s)	34, 65, 323
Bse1I	ACTGG	1 cut(s)	424
Bse3DI	GCAATG	2 cut(s)	114, 306
BseDI	CCNNGG	3 cut(s)	59, 322, 330
BseGI	GGATG	3 cut(s)	14, 86, 405
BseLI	CCNNNNNNNGG	3 cut(s)	34, 65, 323
BseMI	GCAATG	2 cut(s)	114, 306
BseMII	CTCAG	2 cut(s)	286, 726
BseNI	ACTGG	1 cut(s)	424
BseRI	GAGGAG	1 cut(s)	50
BseXI	GCAGC	3 cut(s)	92, 95, 100
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	277
Bsh1236I	CGCG	1 cut(s)	425
BshFI	GGCC	1 cut(s)	672
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	3 cut(s)	34, 65, 323
BsmFI	GGGAC	1 cut(s)	639
BsnI	GGCC	1 cut(s)	672
Bsp143I	GATC	3 cut(s)	226, 256, 426
Bsp1720I	GCTNAGC	1 cut(s)	272
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	673
BspANI	GGCC	1 cut(s)	672
BspCNI	CTCAG	2 cut(s)	285, 725
BspFNI	CGCG	1 cut(s)	425
BspHI	TCATGA	2 cut(s)	31, 351
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	675
BsrDI	GCAATG	2 cut(s)	114, 306
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	3 cut(s)	59, 322, 330
BssMI	GATC	3 cut(s)	226, 256, 426
BssT1I	CCWWGG	3 cut(s)	59, 322, 330
BstAPI	GCANNNNNTGC	2 cut(s)	92, 113
BstC8I	GCNNGC	2 cut(s)	97, 264
BstDEI	CTNAG	3 cut(s)	272, 608, 712
BstDSI	CCRYGG	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	14, 86, 405
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	3 cut(s)	229, 259, 429
BstMBI	GATC	3 cut(s)	226, 256, 426
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 113, 268, 422, 698
BstNSI	RCATGY	2 cut(s)	73, 452
BstSFI	CTRYAG	2 cut(s)	114, 504
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	92, 95, 100
BstV2I	GAAGAC	2 cut(s)	277, 700
BstXI	CCANNNNNNTGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	672
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	14, 86, 405
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	2 cut(s)	97, 264
CciI	TCATGA	2 cut(s)	31, 351
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	48, 544
CviQI	GTAC	2 cut(s)	48, 544
DdeI	CTNAG	3 cut(s)	272, 608, 712
DpnI	GATC	3 cut(s)	228, 258, 428
DpnII	GATC	3 cut(s)	226, 256, 426
Eco130I	CCWWGG	3 cut(s)	59, 322, 330
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoT14I	CCWWGG	3 cut(s)	59, 322, 330
EcoT22I	ATGCAT	1 cut(s)	407
ErhI	CCWWGG	3 cut(s)	59, 322, 330
FaqI	GGGAC	1 cut(s)	639
FauNDI	CATATG	1 cut(s)	683
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	81, 84, 114, 673
FokI	GGATG	3 cut(s)	21, 73, 392
Fsp4HI	GCNGC	4 cut(s)	81, 84, 114, 673
FspBI	CTAG	5 cut(s)	200, 377, 413, 533, 651
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	4 cut(s)	81, 84, 114, 673
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	1 cut(s)	717
HaeIII	GGCC	1 cut(s)	672
HhaI	GCGC	1 cut(s)	425
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HinfI	GANTC	1 cut(s)	373
HphI	GGTGA	2 cut(s)	184, 376
Hpy166II	GTNNAC	1 cut(s)	50
Hpy188III	TCNNGA	4 cut(s)	32, 352, 664, 696
Hpy8I	GTNNAC	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	38, 168, 327, 589
HpyCH4V	TGCA	7 cut(s)	107, 116, 294, 405, 455, 581, 687
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 113, 268, 422, 698
HpyF3I	CTNAG	3 cut(s)	272, 608, 712
HspAI	GCGC	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	226, 256, 426
LmnI	GCTCC	2 cut(s)	326, 698
LpnPI	CCDG	6 cut(s)	109, 113, 136, 405, 585, 681
Lsp1109I	GCAGC	3 cut(s)	92, 95, 100
LweI	GCATC	3 cut(s)	95, 414, 565
MaeI	CTAG	5 cut(s)	200, 377, 413, 533, 651
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	3 cut(s)	228, 258, 428
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	3 cut(s)	226, 256, 426
MboII	GAAGA	4 cut(s)	160, 277, 353, 700
MluCI	AATT	4 cut(s)	164, 456, 526, 659
MmeI	TCCRAC	3 cut(s)	330, 433, 539
MnlI	CCTC	4 cut(s)	28, 546, 568, 607
Mph1103I	ATGCAT	1 cut(s)	407
MslI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 389
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	5 cut(s)	92, 113, 268, 422, 698
NcoI	CCATGG	1 cut(s)	330
NdeI	CATATG	1 cut(s)	683
NdeII	GATC	3 cut(s)	226, 256, 426
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	407
NspI	RCATGY	2 cut(s)	73, 452
OliI	CACNNNNGTG	1 cut(s)	389
PagI	TCATGA	2 cut(s)	31, 351
PciI	ACATGT	1 cut(s)	448
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	4 cut(s)	82, 85, 115, 674
PscI	ACATGT	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	118
RsaI	GTAC	2 cut(s)	49, 545
RsaNI	GTAC	2 cut(s)	48, 544
RseI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 389
SatI	GCNGC	4 cut(s)	81, 84, 114, 673
Sau3AI	GATC	3 cut(s)	226, 256, 426
Sau96I	GGNCC	1 cut(s)	670
SetI	ASST	7 cut(s)	30, 197, 264, 273, 418, 534, 703
SfaNI	GCATC	3 cut(s)	95, 414, 565
SfcI	CTRYAG	2 cut(s)	114, 504
SmiMI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 389
Sse9I	AATT	4 cut(s)	164, 456, 526, 659
SsiI	CCGC	1 cut(s)	673
SspMI	CTAG	5 cut(s)	200, 377, 413, 533, 651
StyI	CCWWGG	3 cut(s)	59, 322, 330
TaqI	TCGA	1 cut(s)	136
TaqII	GACCGA	1 cut(s)	667
TasI	AATT	4 cut(s)	164, 456, 526, 659
TatI	WGTACW	2 cut(s)	47, 543
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	1 cut(s)	373
TscAI	CASTG	1 cut(s)	694
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	3 cut(s)	80, 83, 113
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	6 cut(s)	20, 277, 340, 354, 368, 608
TspGWI	ACGGA	1 cut(s)	36
TspRI	CASTG	1 cut(s)	694
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	1 cut(s)	164
XceI	RCATGY	2 cut(s)	73, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	416
XspI	CTAG	5 cut(s)	200, 377, 413, 533, 651
Zsp2I	ATGCAT	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.