Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8369993.1

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1099

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8369993.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgggtggatgtgacaacaatggaaaccttcatgaggagaagttcagtgcaccaatgccttggattggcatgtatgtagcagcagcatcctttgcctgcctgattgcattggctgcagatgtaatccttggctttcgatgccacaaactatggtttccttccaaattcttctccatcaatgccactactcttaccttgctaggcgtggctatcaaactatcagttgatctcaacactcccatgccgagcagccatgatcagcttgcgaaactcagcagctcagtcttcatctgcacggcaatgtccaactccatgccttcccttggagccatggagaatgaagaaatgttcatgaatgtgattgctttggggattctagtcatcaccctaattgtcaatatctgcatccaactagctaccggagcaatctttgtgttctggaaggagcatgctacaataatgttcaccatgcttgttctactcctcatgttgattttctctgctctaactgttccaaccacaaagagttacttagagaagaagtacaataagaagtaccaattagctttgaaagagtgtgcaaaccaaataagtgaggctgggaaacttagagaggtattgactaaacattgggtgctggctcatacttctagtccccaattcgtgatgggccgctcggtgatatgcactgcttctggagctttctgtcttctcagcaccatgattttggctgaagccatgattcgaacttatgtaatgacttcatcgtttaggttttgcagcggagaatctgactacaagctcacaacaactttgattcttttcacacaggctgttgcagttggagttggtactattgctccagcattcaggtggttcatggccataaacttcaagtgcccaaaaagaggaaacataagcctcaaaatggaattcgagactgaaaaatactggattcaggggctgttggggttgaaaaagcaaccattatctttcagaatccaaaataggcactgcaggaaacttgctcatgaagcaagaagcatgtttttggacatttgtattacaatgcagaaagggatcgtcttatcgagtaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

40.71

Weight (kDa)

9.23

Isoelectric Point (pI)

38.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	675
AciI	CCGC	2 cut(s)	673, 783
AclWI	GGATC	1 cut(s)	1088
AcoI	YGGCCR	1 cut(s)	882
AcsI	RAATTY	2 cut(s)	164, 932
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	545, 557, 853
AfiI	CCNNNNNNNGG	5 cut(s)	34, 65, 323, 908, 928
AgsI	TTSAA	3 cut(s)	571, 895, 976
AluBI	AGCT	6 cut(s)	262, 279, 416, 566, 701, 802
AluI	AGCT	6 cut(s)	262, 279, 416, 566, 701, 802
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	932
Alw44I	GTGCAC	1 cut(s)	48
AlwI	GGATC	1 cut(s)	1088
AlwNI	CAGNNNCTG	1 cut(s)	964
AoxI	GGCC	2 cut(s)	670, 882
ApaLI	GTGCAC	1 cut(s)	48
ApeKI	GCWGC	6 cut(s)	80, 83, 113, 249, 276, 780
ApoI	RAATTY	2 cut(s)	164, 932
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	376, 457, 691
AsuII	TTCGAA	1 cut(s)	745
BaeGI	GKGCMC	2 cut(s)	52, 902
BalI	TGGCCA	1 cut(s)	884
BbsI	GAAGAC	2 cut(s)	277, 701
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	6 cut(s)	92, 95, 100, 261, 288, 792
BccI	CCATC	2 cut(s)	182, 661
BceAI	ACGGC	1 cut(s)	312
BclI	TGATCA	1 cut(s)	256
BcoDI	GTCTC	1 cut(s)	932
BfaI	CTAG	4 cut(s)	200, 377, 413, 651
BfmI	CTRYAG	2 cut(s)	114, 1015
BisI	GCNGC	7 cut(s)	81, 84, 114, 250, 277, 673, 781
BlsI	GCNGC	7 cut(s)	82, 85, 115, 251, 278, 674, 782
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	1 cut(s)	328
BmsI	GCATC	3 cut(s)	95, 128, 414
BpiI	GAAGAC	2 cut(s)	277, 701
BpmI	CTGGAG	2 cut(s)	717, 846
Bpu14I	TTCGAA	1 cut(s)	745
BsaJI	CCNNGG	4 cut(s)	59, 127, 322, 330
BsaWI	WCCGGW	1 cut(s)	419
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 65, 323, 908, 928
Bse1I	ACTGG	1 cut(s)	956
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	4 cut(s)	59, 127, 322, 330
BseGI	GGATG	3 cut(s)	14, 86, 405
BseLI	CCNNNNNNNGG	5 cut(s)	34, 65, 323, 908, 928
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	3 cut(s)	286, 294, 727
BseNI	ACTGG	1 cut(s)	956
BseRI	GAGGAG	2 cut(s)	50, 473
BseSI	GKGCMC	2 cut(s)	52, 902
BseXI	GCAGC	6 cut(s)	92, 95, 100, 261, 288, 792
BseYI	CCCAGC	1 cut(s)	599
BsgI	GTGCAG	1 cut(s)	277
BshFI	GGCC	2 cut(s)	672, 884
BsiHKAI	GWGCWC	1 cut(s)	52
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	639
BslI	CCNNNNNNNGG	5 cut(s)	34, 65, 323, 908, 928
BsmAI	GTCTC	1 cut(s)	932
BsmFI	GGGAC	1 cut(s)	639
BsmI	GAATGC	1 cut(s)	866
BsnI	GGCC	2 cut(s)	672, 884
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	2 cut(s)	52, 902
Bsp143I	GATC	3 cut(s)	226, 256, 1080
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	2 cut(s)	673, 783
BspANI	GGCC	2 cut(s)	672, 884
BspCNI	CTCAG	3 cut(s)	285, 293, 726
BspHI	TCATGA	3 cut(s)	31, 351, 1030
BspLI	GGNNCC	1 cut(s)	328
BspMAI	CTGCAG	2 cut(s)	118, 1019
BspPI	GGATC	1 cut(s)	1088
BspT104I	TTCGAA	1 cut(s)	745
BsrBI	CCGCTC	1 cut(s)	675
BsrDI	GCAATG	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	956
BssECI	CCNNGG	4 cut(s)	59, 127, 322, 330
BssMI	GATC	3 cut(s)	226, 256, 1080
BssT1I	CCWWGG	4 cut(s)	59, 127, 322, 330
Bst4CI	ACNGT	1 cut(s)	511
BstAPI	GCANNNNNTGC	2 cut(s)	92, 113
BstBI	TTCGAA	1 cut(s)	745
BstC8I	GCNNGC	4 cut(s)	97, 264, 450, 639
BstDEI	CTNAG	5 cut(s)	272, 280, 532, 608, 713
BstDSI	CCRYGG	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	32
BstF5I	GGATG	3 cut(s)	14, 86, 405
BstKTI	GATC	3 cut(s)	229, 259, 1083
BstMAI	GTCTC	1 cut(s)	932
BstMBI	GATC	3 cut(s)	226, 256, 1080
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 113, 138, 422, 698, 1034
BstNSI	RCATGY	3 cut(s)	73, 452, 1048
BstSFI	CTRYAG	2 cut(s)	114, 1015
BstSLI	GKGCMC	2 cut(s)	52, 902
BstV1I	GCAGC	6 cut(s)	92, 95, 100, 261, 288, 792
BstV2I	GAAGAC	2 cut(s)	277, 701
BstXI	CCANNNNNNTGG	2 cut(s)	60, 727
BsuRI	GGCC	2 cut(s)	672, 884
BtgI	CCRYGG	1 cut(s)	330
BtsCI	GGATG	3 cut(s)	14, 86, 405
BtsI	GCAGTG	2 cut(s)	687, 1012
BtsIMutI	CAGTG	3 cut(s)	52, 687, 1012
Cac8I	GCNNGC	4 cut(s)	97, 264, 450, 639
CaiI	CAGNNNCTG	1 cut(s)	964
CciI	TCATGA	3 cut(s)	31, 351, 1030
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	3 cut(s)	544, 556, 852
CviQI	GTAC	3 cut(s)	544, 556, 852
DdeI	CTNAG	5 cut(s)	272, 280, 532, 608, 713
DpnI	GATC	3 cut(s)	228, 258, 1082
DpnII	GATC	3 cut(s)	226, 256, 1080
EaeI	YGGCCR	1 cut(s)	882
Eco130I	CCWWGG	4 cut(s)	59, 127, 322, 330
Eco57I	CTGAAG	1 cut(s)	753
EcoNI	CCTNNNNNAGG	1 cut(s)	32
EcoRI	GAATTC	1 cut(s)	932
EcoT14I	CCWWGG	4 cut(s)	59, 127, 322, 330
ErhI	CCWWGG	4 cut(s)	59, 127, 322, 330
FalI	AAGNNNNNCTT	2 cut(s)	515, 547
FaqI	GGGAC	1 cut(s)	639
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	7 cut(s)	81, 84, 114, 250, 277, 673, 781
FokI	GGATG	3 cut(s)	21, 73, 392
Fsp4HI	GCNGC	7 cut(s)	81, 84, 114, 250, 277, 673, 781
FspBI	CTAG	4 cut(s)	200, 377, 413, 651
GluI	GCNGC	7 cut(s)	81, 84, 114, 250, 277, 673, 781
GsaI	CCCAGC	1 cut(s)	603
GsuI	CTGGAG	2 cut(s)	717, 846
HaeIII	GGCC	2 cut(s)	672, 884
HapII	CCGG	1 cut(s)	420
HinfI	GANTC	6 cut(s)	373, 742, 788, 817, 955, 999
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	3 cut(s)	376, 457, 691
Hpy166II	GTNNAC	2 cut(s)	50, 465
Hpy188I	TCNGA	2 cut(s)	793, 998
Hpy188III	TCNNGA	7 cut(s)	32, 352, 439, 664, 696, 937, 1031
Hpy8I	GTNNAC	2 cut(s)	50, 465
HpyAV	CCTTC	4 cut(s)	38, 168, 327, 436
HpyCH4III	ACNGT	1 cut(s)	511
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 113, 138, 422, 698, 1034
HpyF3I	CTNAG	5 cut(s)	272, 280, 532, 608, 713
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	226, 256, 1080
LmnI	GCTCC	5 cut(s)	326, 422, 445, 698, 865
Lsp1109I	GCAGC	6 cut(s)	92, 95, 100, 261, 288, 792
LweI	GCATC	3 cut(s)	95, 128, 414
MaeI	CTAG	4 cut(s)	200, 377, 413, 651
MaeIII	GTNAC	2 cut(s)	11, 527
MalI	GATC	3 cut(s)	228, 258, 1082
MbiI	CCGCTC	1 cut(s)	675
MboI	GATC	3 cut(s)	226, 256, 1080
MboII	GAAGA	5 cut(s)	160, 277, 353, 550, 701
MhlI	GDGCHC	2 cut(s)	52, 902
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	5 cut(s)	164, 390, 560, 659, 932
MluNI	TGGCCA	1 cut(s)	884
MmeI	TCCRAC	4 cut(s)	330, 433, 539, 823
MnlI	CCTC	6 cut(s)	28, 494, 589, 607, 902, 932
Mox20I	TGGCCA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	884
MslI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 871
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	783
MspI	CCGG	1 cut(s)	420
Mva1269I	GAATGC	1 cut(s)	866
MwoI	GCNNNNNNNGC	6 cut(s)	92, 113, 138, 422, 698, 1034
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	3 cut(s)	226, 256, 1080
NlaIV	GGNNCC	1 cut(s)	328
NmeAIII	GCCGAG	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	3 cut(s)	73, 452, 1048
NspV	TTCGAA	1 cut(s)	745
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	3 cut(s)	31, 351, 1030
PctI	GAATGC	1 cut(s)	866
PfeI	GAWTC	6 cut(s)	373, 742, 788, 817, 955, 999
PkrI	GCNGC	7 cut(s)	82, 85, 115, 251, 278, 674, 782
PspFI	CCCAGC	1 cut(s)	599
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	670
PstI	CTGCAG	2 cut(s)	118, 1019
PstNI	CAGNNNCTG	1 cut(s)	964
RsaI	GTAC	3 cut(s)	545, 557, 853
RsaNI	GTAC	3 cut(s)	544, 556, 852
RseI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 871
SatI	GCNGC	7 cut(s)	81, 84, 114, 250, 277, 673, 781
Sau3AI	GATC	3 cut(s)	226, 256, 1080
Sau96I	GGNCC	1 cut(s)	670
SduI	GDGCHC	2 cut(s)	52, 902
SfaNI	GCATC	3 cut(s)	95, 128, 414
SfcI	CTRYAG	2 cut(s)	114, 1015
SfuI	TTCGAA	1 cut(s)	745
SmiMI	CAYNNNNRTG	4 cut(s)	239, 299, 356, 871
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	5 cut(s)	164, 390, 560, 659, 932
SsiI	CCGC	2 cut(s)	673, 783
SspMI	CTAG	4 cut(s)	200, 377, 413, 651
StyI	CCWWGG	4 cut(s)	59, 127, 322, 330
TaaI	ACNGT	1 cut(s)	511
TaqI	TCGA	4 cut(s)	136, 745, 936, 1091
TasI	AATT	5 cut(s)	164, 390, 560, 659, 932
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	675
TfiI	GAWTC	6 cut(s)	373, 742, 788, 817, 955, 999
TscAI	CASTG	3 cut(s)	52, 694, 1019
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	6 cut(s)	80, 83, 113, 249, 276, 780
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	8 cut(s)	20, 277, 340, 354, 368, 753, 868, 1047
TspRI	CASTG	3 cut(s)	52, 694, 1019
VneI	GTGCAC	1 cut(s)	48
XagI	CCTNNNNNAGG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	164, 932
XceI	RCATGY	3 cut(s)	73, 452, 1048
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XspI	CTAG	4 cut(s)	200, 377, 413, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.