No description available
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G02650 |
| fragaria_vesca | FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871 |
| malus_domestica | MD06G1060600.v1.1 |
| prunus_persica | Prupe.5G071600_v2.0.a1 |
| pyrus_communis | pycom06g05050 |
| rosa_chinensis | RchiOBHm_Chr7g0202971 |
| rosa_laevigata | RLG00000003560 RLG00000003562 |
| rosa_multiflora | Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00254130 Rroxscaffold_3G00254150 |
| rosa_rugosa | Rorug07G0074000 |
| rosa_samantha | Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300 |
| rosa_wichuraiana | Rw7G017680 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 675 |
| AciI | CCGC | 3 cut(s) | 6, 673, 2238 |
| AclWI | GGATC | 5 cut(s) | 1596, 1683, 2090, 2103, 2203 |
| AcoI | YGGCCR | 1 cut(s) | 882 |
| AcsI | RAATTY | 5 cut(s) | 164, 932, 1403, 1784, 2079 |
| AcuI | CTGAAG | 2 cut(s) | 753, 1458 |
| AfaI | GTAC | 6 cut(s) | 126, 545, 853, 950, 1562, 1719 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 34, 65, 323, 908, 1854 |
| AflIII | ACRYGT | 1 cut(s) | 448 |
| AjnI | CCWGG | 1 cut(s) | 1613 |
| AluBI | AGCT | 7 cut(s) | 262, 416, 509, 701, 802, 833, 1400 |
| AluI | AGCT | 7 cut(s) | 262, 416, 509, 701, 802, 833, 1400 |
| Alw21I | GWGCWC | 1 cut(s) | 52 |
| Alw26I | GTCTC | 1 cut(s) | 1952 |
| Alw44I | GTGCAC | 1 cut(s) | 48 |
| AlwI | GGATC | 5 cut(s) | 1596, 1683, 2090, 2103, 2203 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 964 |
| AoxI | GGCC | 4 cut(s) | 670, 882, 1196, 1220 |
| ApaLI | GTGCAC | 1 cut(s) | 48 |
| ApeKI | GCWGC | 6 cut(s) | 80, 83, 113, 982, 1622, 1639 |
| ApoI | RAATTY | 5 cut(s) | 164, 932, 1403, 1784, 2079 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1982 |
| AspS9I | GGNCC | 2 cut(s) | 670, 1196 |
| AsuC2I | CCSGG | 1 cut(s) | 1195 |
| AsuHPI | GGTGA | 6 cut(s) | 184, 475, 691, 1102, 1268, 1930 |
| AsuII | TTCGAA | 1 cut(s) | 745 |
| BaeGI | GKGCMC | 3 cut(s) | 52, 902, 1462 |
| BalI | TGGCCA | 1 cut(s) | 884 |
| BamHI | GGATCC | 1 cut(s) | 2095 |
| BanII | GRGCYC | 1 cut(s) | 1709 |
| BbsI | GAAGAC | 2 cut(s) | 277, 701 |
| Bbv12I | GWGCWC | 1 cut(s) | 52 |
| BbvI | GCAGC | 6 cut(s) | 92, 95, 100, 994, 1626, 1634 |
| BccI | CCATC | 3 cut(s) | 182, 661, 1532 |
| BciT130I | CCWGG | 1 cut(s) | 1615 |
| BclI | TGATCA | 1 cut(s) | 256 |
| BcnI | CCSGG | 1 cut(s) | 1195 |
| BcoDI | GTCTC | 1 cut(s) | 1952 |
| BfaI | CTAG | 9 cut(s) | 200, 377, 533, 1556, 1667, 1697, 1749, 2060, 2207 |
| BfmI | CTRYAG | 3 cut(s) | 114, 504, 1015 |
| BisI | GCNGC | 7 cut(s) | 81, 84, 114, 673, 983, 1623, 1640 |
| BlsI | GCNGC | 7 cut(s) | 82, 85, 115, 674, 984, 1624, 1641 |
| BmcAI | AGTACT | 3 cut(s) | 126, 950, 1719 |
| Bme1390I | CCNGG | 2 cut(s) | 1195, 1615 |
| BmgT120I | GGNCC | 2 cut(s) | 670, 1196 |
| BmiI | GGNNCC | 2 cut(s) | 328, 2097 |
| BmrFI | CCNGG | 2 cut(s) | 1195, 1615 |
| BmsI | GCATC | 4 cut(s) | 95, 414, 565, 2102 |
| BpiI | GAAGAC | 2 cut(s) | 277, 701 |
| BpmI | CTGGAG | 2 cut(s) | 717, 2070 |
| Bpu14I | TTCGAA | 1 cut(s) | 745 |
| BpuEI | CTTGAG | 1 cut(s) | 1486 |
| BpuMI | CCSGG | 1 cut(s) | 1195 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1653, 1674 |
| BsaJI | CCNNGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 844, 874 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 34, 65, 323, 908, 1854 |
| Bse1I | ACTGG | 3 cut(s) | 424, 956, 1917 |
| Bse3DI | GCAATG | 3 cut(s) | 114, 306, 1980 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1653, 1674 |
| BseBI | CCWGG | 1 cut(s) | 1615 |
| BseDI | CCNNGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| BseGI | GGATG | 5 cut(s) | 14, 86, 405, 1807, 2117 |
| BseJI | GATNNNNATC | 2 cut(s) | 1653, 1674 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 34, 65, 323, 908, 1854 |
| BseMI | GCAATG | 3 cut(s) | 114, 306, 1980 |
| BseMII | CTCAG | 6 cut(s) | 286, 591, 727, 1197, 2040, 2196 |
| BseNI | ACTGG | 3 cut(s) | 424, 956, 1917 |
| BseRI | GAGGAG | 2 cut(s) | 50, 1340 |
| BseSI | GKGCMC | 3 cut(s) | 52, 902, 1462 |
| BseXI | GCAGC | 6 cut(s) | 92, 95, 100, 994, 1626, 1634 |
| BsgI | GTGCAG | 1 cut(s) | 277 |
| BshFI | GGCC | 4 cut(s) | 672, 884, 1198, 1222 |
| BsiHKAI | GWGCWC | 1 cut(s) | 52 |
| BsiSI | CCGG | 1 cut(s) | 1194 |
| BslFI | GGGAC | 1 cut(s) | 639 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 34, 65, 323, 908, 1854 |
| BsmAI | GTCTC | 1 cut(s) | 1952 |
| BsmFI | GGGAC | 1 cut(s) | 639 |
| BsmI | GAATGC | 1 cut(s) | 866 |
| BsnI | GGCC | 4 cut(s) | 672, 884, 1198, 1222 |
| Bsp119I | TTCGAA | 1 cut(s) | 745 |
| Bsp1286I | GDGCHC | 4 cut(s) | 52, 902, 1462, 1709 |
| Bsp1407I | TGTACA | 1 cut(s) | 1560 |
| Bsp19I | CCATGG | 1 cut(s) | 330 |
| BspACI | CCGC | 3 cut(s) | 6, 673, 2238 |
| BspANI | GGCC | 4 cut(s) | 672, 884, 1198, 1222 |
| BspCNI | CTCAG | 6 cut(s) | 285, 592, 726, 1198, 2041, 2195 |
| BspHI | TCATGA | 2 cut(s) | 31, 1278 |
| BspLI | GGNNCC | 2 cut(s) | 328, 2097 |
| BspMAI | CTGCAG | 1 cut(s) | 118 |
| BspPI | GGATC | 5 cut(s) | 1596, 1683, 2090, 2103, 2203 |
| BspQI | GCTCTTC | 1 cut(s) | 1329 |
| BspT104I | TTCGAA | 1 cut(s) | 745 |
| BsrBI | CCGCTC | 1 cut(s) | 675 |
| BsrDI | GCAATG | 3 cut(s) | 114, 306, 1980 |
| BsrGI | TGTACA | 1 cut(s) | 1560 |
| BsrI | ACTGG | 3 cut(s) | 424, 956, 1917 |
| BssECI | CCNNGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| BssT1I | CCWWGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| Bst2UI | CCWGG | 1 cut(s) | 1615 |
| Bst4CI | ACNGT | 3 cut(s) | 1412, 1454, 2017 |
| Bst6I | CTCTTC | 4 cut(s) | 1329, 1875, 1995, 2208 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 92, 113 |
| BstAUI | TGTACA | 1 cut(s) | 1560 |
| BstBI | TTCGAA | 1 cut(s) | 745 |
| BstC8I | GCNNGC | 3 cut(s) | 97, 264, 2025 |
| BstDEI | CTNAG | 8 cut(s) | 272, 600, 608, 713, 995, 1206, 2049, 2182 |
| BstDSI | CCRYGG | 1 cut(s) | 330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 32 |
| BstF5I | GGATG | 5 cut(s) | 14, 86, 405, 1807, 2117 |
| BstMAI | GTCTC | 1 cut(s) | 1952 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 92, 113, 422, 698, 1034 |
| BstNI | CCWGG | 1 cut(s) | 1615 |
| BstNSI | RCATGY | 5 cut(s) | 73, 99, 452, 1048, 1890 |
| BstSCI | CCNGG | 2 cut(s) | 1193, 1613 |
| BstSFI | CTRYAG | 3 cut(s) | 114, 504, 1015 |
| BstSLI | GKGCMC | 3 cut(s) | 52, 902, 1462 |
| BstV1I | GCAGC | 6 cut(s) | 92, 95, 100, 994, 1626, 1634 |
| BstV2I | GAAGAC | 2 cut(s) | 277, 701 |
| BstX2I | RGATCY | 2 cut(s) | 1675, 2095 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 60, 727, 1455 |
| BstYI | RGATCY | 2 cut(s) | 1675, 2095 |
| BsuRI | GGCC | 4 cut(s) | 672, 884, 1198, 1222 |
| BtgI | CCRYGG | 1 cut(s) | 330 |
| BtsCI | GGATG | 5 cut(s) | 14, 86, 405, 1807, 2117 |
| BtsI | GCAGTG | 2 cut(s) | 687, 787 |
| BtsIMutI | CAGTG | 5 cut(s) | 52, 687, 787, 1417, 1910 |
| Cac8I | GCNNGC | 3 cut(s) | 97, 264, 2025 |
| CaiI | CAGNNNCTG | 1 cut(s) | 964 |
| CciI | TCATGA | 2 cut(s) | 31, 1278 |
| Cfr13I | GGNCC | 2 cut(s) | 670, 1196 |
| Csp6I | GTAC | 6 cut(s) | 125, 544, 852, 949, 1561, 1718 |
| CviQI | GTAC | 6 cut(s) | 125, 544, 852, 949, 1561, 1718 |
| DdeI | CTNAG | 8 cut(s) | 272, 600, 608, 713, 995, 1206, 2049, 2182 |
| EaeI | YGGCCR | 1 cut(s) | 882 |
| Eam1104I | CTCTTC | 4 cut(s) | 1329, 1875, 1995, 2208 |
| EarI | CTCTTC | 4 cut(s) | 1329, 1875, 1995, 2208 |
| EciI | GGCGGA | 1 cut(s) | 21 |
| Eco130I | CCWWGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| Eco24I | GRGCYC | 1 cut(s) | 1709 |
| Eco57I | CTGAAG | 2 cut(s) | 753, 1458 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 32 |
| EcoRI | GAATTC | 2 cut(s) | 932, 2079 |
| EcoRII | CCWGG | 1 cut(s) | 1613 |
| EcoT14I | CCWWGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| EcoT22I | ATGCAT | 3 cut(s) | 407, 1854, 2117 |
| EcoT38I | GRGCYC | 1 cut(s) | 1709 |
| ErhI | CCWWGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 726, 758 |
| FaqI | GGGAC | 1 cut(s) | 639 |
| FbaI | TGATCA | 1 cut(s) | 256 |
| Fnu4HI | GCNGC | 7 cut(s) | 81, 84, 114, 673, 983, 1623, 1640 |
| FokI | GGATG | 5 cut(s) | 21, 73, 392, 1814, 2124 |
| FriOI | GRGCYC | 1 cut(s) | 1709 |
| Fsp4HI | GCNGC | 7 cut(s) | 81, 84, 114, 673, 983, 1623, 1640 |
| FspBI | CTAG | 9 cut(s) | 200, 377, 533, 1556, 1667, 1697, 1749, 2060, 2207 |
| GluI | GCNGC | 7 cut(s) | 81, 84, 114, 673, 983, 1623, 1640 |
| GsuI | CTGGAG | 2 cut(s) | 717, 2070 |
| HaeIII | GGCC | 4 cut(s) | 672, 884, 1198, 1222 |
| HapII | CCGG | 1 cut(s) | 1194 |
| HincII | GTYRAC | 1 cut(s) | 2071 |
| HindII | GTYRAC | 1 cut(s) | 2071 |
| HpaI | GTTAAC | 1 cut(s) | 2071 |
| HpaII | CCGG | 1 cut(s) | 1194 |
| HphI | GGTGA | 6 cut(s) | 184, 475, 691, 1102, 1268, 1930 |
| Hpy166II | GTNNAC | 5 cut(s) | 50, 1054, 1561, 2032, 2071 |
| Hpy188I | TCNGA | 7 cut(s) | 793, 1207, 1438, 1866, 1930, 2179, 2185 |
| Hpy8I | GTNNAC | 5 cut(s) | 50, 1054, 1561, 2032, 2071 |
| Hpy99I | CGWCG | 1 cut(s) | 1895 |
| HpyAV | CCTTC | 9 cut(s) | 38, 168, 327, 589, 1247, 1320, 1612, 1821, 2173 |
| HpyCH4III | ACNGT | 3 cut(s) | 1412, 1454, 2017 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 92, 113, 422, 698, 1034 |
| HpyF3I | CTNAG | 8 cut(s) | 272, 600, 608, 713, 995, 1206, 2049, 2182 |
| Ksp22I | TGATCA | 1 cut(s) | 256 |
| KspAI | GTTAAC | 1 cut(s) | 2071 |
| LguI | GCTCTTC | 1 cut(s) | 1329 |
| LmnI | GCTCC | 3 cut(s) | 326, 698, 865 |
| Lsp1109I | GCAGC | 6 cut(s) | 92, 95, 100, 994, 1626, 1634 |
| LweI | GCATC | 4 cut(s) | 95, 414, 565, 2102 |
| MaeI | CTAG | 9 cut(s) | 200, 377, 533, 1556, 1667, 1697, 1749, 2060, 2207 |
| MaeIII | GTNAC | 9 cut(s) | 11, 1148, 1187, 1412, 1471, 1505, 1689, 2133, 2189 |
| MbiI | CCGCTC | 1 cut(s) | 675 |
| MflI | RGATCY | 2 cut(s) | 1675, 2095 |
| MhlI | GDGCHC | 4 cut(s) | 52, 902, 1462, 1709 |
| MlsI | TGGCCA | 1 cut(s) | 884 |
| MluNI | TGGCCA | 1 cut(s) | 884 |
| MlyI | GAGTC | 4 cut(s) | 1427, 1816, 1861, 2174 |
| MmeI | TCCRAC | 4 cut(s) | 330, 539, 823, 948 |
| Mox20I | TGGCCA | 1 cut(s) | 884 |
| Mph1103I | ATGCAT | 3 cut(s) | 407, 1854, 2117 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1982 |
| MscI | TGGCCA | 1 cut(s) | 884 |
| MslI | CAYNNNNRTG | 5 cut(s) | 239, 299, 871, 1049, 1596 |
| Msp20I | TGGCCA | 1 cut(s) | 884 |
| MspI | CCGG | 1 cut(s) | 1194 |
| MspR9I | CCNGG | 2 cut(s) | 1195, 1615 |
| Mva1269I | GAATGC | 1 cut(s) | 866 |
| MvaI | CCWGG | 1 cut(s) | 1615 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 92, 113, 422, 698, 1034 |
| NciI | CCSGG | 1 cut(s) | 1195 |
| NcoI | CCATGG | 1 cut(s) | 330 |
| NlaIV | GGNNCC | 2 cut(s) | 328, 2097 |
| NmeAIII | GCCGAG | 1 cut(s) | 108 |
| NmuCI | GTSAC | 7 cut(s) | 11, 1148, 1412, 1471, 1689, 2133, 2189 |
| NsiI | ATGCAT | 3 cut(s) | 407, 1854, 2117 |
| NspI | RCATGY | 5 cut(s) | 73, 99, 452, 1048, 1890 |
| NspV | TTCGAA | 1 cut(s) | 745 |
| PaeI | GCATGC | 1 cut(s) | 99 |
| PagI | TCATGA | 2 cut(s) | 31, 1278 |
| PciI | ACATGT | 1 cut(s) | 448 |
| PciSI | GCTCTTC | 1 cut(s) | 1329 |
| PctI | GAATGC | 1 cut(s) | 866 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1982 |
| PfeI | GAWTC | 7 cut(s) | 373, 788, 955, 999, 1760, 2056, 2152 |
| PkrI | GCNGC | 7 cut(s) | 82, 85, 115, 674, 984, 1624, 1641 |
| PleI | GAGTC | 4 cut(s) | 1427, 1815, 1861, 2174 |
| PpsI | GAGTC | 4 cut(s) | 1427, 1815, 1861, 2174 |
| PscI | ACATGT | 1 cut(s) | 448 |
| Psp6I | CCWGG | 1 cut(s) | 1613 |
| PspGI | CCWGG | 1 cut(s) | 1613 |
| PspN4I | GGNNCC | 2 cut(s) | 328, 2097 |
| PspPI | GGNCC | 2 cut(s) | 670, 1196 |
| PstI | CTGCAG | 1 cut(s) | 118 |
| PstNI | CAGNNNCTG | 1 cut(s) | 964 |
| PsuI | RGATCY | 2 cut(s) | 1675, 2095 |
| RsaI | GTAC | 6 cut(s) | 126, 545, 853, 950, 1562, 1719 |
| RsaNI | GTAC | 6 cut(s) | 125, 544, 852, 949, 1561, 1718 |
| RseI | CAYNNNNRTG | 5 cut(s) | 239, 299, 871, 1049, 1596 |
| SapI | GCTCTTC | 1 cut(s) | 1329 |
| SatI | GCNGC | 7 cut(s) | 81, 84, 114, 673, 983, 1623, 1640 |
| Sau96I | GGNCC | 2 cut(s) | 670, 1196 |
| ScaI | AGTACT | 3 cut(s) | 126, 950, 1719 |
| SchI | GAGTC | 4 cut(s) | 1427, 1816, 1861, 2174 |
| ScrFI | CCNGG | 2 cut(s) | 1195, 1615 |
| SduI | GDGCHC | 4 cut(s) | 52, 902, 1462, 1709 |
| SfaNI | GCATC | 4 cut(s) | 95, 414, 565, 2102 |
| SfcI | CTRYAG | 3 cut(s) | 114, 504, 1015 |
| SfuI | TTCGAA | 1 cut(s) | 745 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 239, 299, 871, 1049, 1596 |
| SmlI | CTYRAG | 1 cut(s) | 1501 |
| SmoI | CTYRAG | 1 cut(s) | 1501 |
| SphI | GCATGC | 1 cut(s) | 99 |
| SsiI | CCGC | 3 cut(s) | 6, 673, 2238 |
| SspI | AATATT | 1 cut(s) | 1310 |
| SspMI | CTAG | 9 cut(s) | 200, 377, 533, 1556, 1667, 1697, 1749, 2060, 2207 |
| StyD4I | CCNGG | 2 cut(s) | 1193, 1613 |
| StyI | CCWWGG | 5 cut(s) | 59, 322, 330, 1428, 1549 |
| TaaI | ACNGT | 3 cut(s) | 1412, 1454, 2017 |
| TaqI | TCGA | 7 cut(s) | 136, 745, 936, 1105, 1524, 1647, 2159 |
| TatI | WGTACW | 5 cut(s) | 124, 543, 948, 1560, 1717 |
| TauI | GCSGC | 1 cut(s) | 675 |
| TfiI | GAWTC | 7 cut(s) | 373, 788, 955, 999, 1760, 2056, 2152 |
| TscAI | CASTG | 5 cut(s) | 52, 694, 787, 1417, 1917 |
| TseFI | GTSAC | 7 cut(s) | 11, 1148, 1412, 1471, 1689, 2133, 2189 |
| TseI | GCWGC | 6 cut(s) | 80, 83, 113, 982, 1622, 1639 |
| Tsp45I | GTSAC | 7 cut(s) | 11, 1148, 1412, 1471, 1689, 2133, 2189 |
| TspGWI | ACGGA | 4 cut(s) | 30, 36, 2158, 2208 |
| TspRI | CASTG | 5 cut(s) | 52, 694, 787, 1417, 1917 |
| VneI | GTGCAC | 1 cut(s) | 48 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 32 |
| XapI | RAATTY | 5 cut(s) | 164, 932, 1403, 1784, 2079 |
| XbaI | TCTAGA | 3 cut(s) | 532, 1748, 2059 |
| XceI | RCATGY | 5 cut(s) | 73, 99, 452, 1048, 1890 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 416 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1982 |
| XspI | CTAG | 9 cut(s) | 200, 377, 533, 1556, 1667, 1697, 1749, 2060, 2207 |
| ZrmI | AGTACT | 3 cut(s) | 126, 950, 1719 |
| Zsp2I | ATGCAT | 3 cut(s) | 407, 1854, 2117 |