Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Forward (+)

6778837 .. 6780027

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g05050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGCAAACGGGGATTGTCCTATCAAGCAAAGCAATTCGATCAATTTCCATTTTCTTGGTGAGTCGAATCTTTTTACTCAGCGACTTGTTCAGGGAGTGGAAGAACAAGAAGTTGGAATTCGACTCCATCCCAATGTCCCAGAAAAACCCAAGGCAAGATCTTAGTAATTATGTTCTGTATCTTGAAGGTGAGGATGCGTTGGTTCATTACATGATGAATTCCAACTGTGATGCTACTGATCATTGGACTCAGAAGGGAATGAAAGAAGAACCCAAGCATCTCATTAAGCTGTTGGAGAAATTGACAGCCTCACAAGGATTCAAGGGAGTGGCAGAGTTTGACAGTGATCAAGTTCCCTCTCTACAATGTGAAGAACCTCCAAATTGTTGGGCTCTTCCCGTTCTGACACTAACAAGTATTGCACTTGCACTTCCAAACATCGGTTCTGGTTCAATCGAAAATCTGATAGATGGGGTACATGAAGGGCTCATGTACATGAATGCTATTGAGGAACAGCTGGATAGCAAAGGAGTTCTTGCCAACATCAGAAAGGCGGCAGAGGTCGTGTGGCTAAGAGTTGATCTATATCACACATGGCTAGATTTGGATCTCAGAAAATTGTCACGTCAAGGGAAGAGTCTAAAGGAAACACTTGAAGAACTTTCTGAAACTGCAAAATCCATATTTGAAGAATGTAGAAAGCGGCGGATGAGTAAGGAGAATGTGTGTTCGAGAGATATCCCTTCCAAATGGTCTGTTAAGGAGCTTGCCGCTAATTCCATGTACAGGATAAGCCAAACTCTTCTGCTAAATCCTGATGGCCAAATCAATGAATCAAGTGAGAGATTGTATGAATCAATGGTTGTGATGATCTCTGACATAATGGGTGCGTGTCTAACAAATTTACAGGAAGCTATGGCAATCAAGTGTTTTAACAGCACAATTGAAGAGAGGGAGGAAAGTGTGAGACTTGCAGTTCACGTTCTTGGTAAAACTGAAAGGATTCTTTATATTGTGGAACCTGGTATTCCTTCAAATTTGGATCATCACCAAATGGCATGCATTGATGAGTGGCGTTCGGCACGGAAACCCCAGATAAATTTCAAGGCGTGCACATCATTTCCAATATCCGAGAGTGACAGGGATTCTTCGGCAGGCTCAAGTGATCACTTTTACCCGACGATGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

44.96

Weight (kDa)

5.38

Isoelectric Point (pI)

54.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	554, 703, 706, 771
AclWI	GGATC	2 cut(s)	615, 1050
AcoI	YGGCCR	1 cut(s)	820
AcsI	RAATTY	5 cut(s)	116, 217, 901, 1036, 1099
AfaI	GTAC	3 cut(s)	477, 494, 785
AfiI	CCNNNNNNNGG	3 cut(s)	440, 786, 1183
AgsI	TTSAA	8 cut(s)	185, 322, 453, 656, 689, 947, 1035, 1105
AjiI	CACGTC	1 cut(s)	626
AjnI	CCWGG	1 cut(s)	1021
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 127, 427, 459
AluBI	AGCT	4 cut(s)	289, 517, 766, 914
AluI	AGCT	4 cut(s)	289, 517, 766, 914
Alw21I	GWGCWC	1 cut(s)	1115
Alw26I	GTCTC	1 cut(s)	961
Alw44I	GTGCAC	1 cut(s)	1111
AlwI	GGATC	2 cut(s)	615, 1050
AoxI	GGCC	1 cut(s)	820
ApaLI	GTGCAC	1 cut(s)	1111
ApoI	RAATTY	5 cut(s)	116, 217, 901, 1036, 1099
Asp700I	GAANNNNTTC	1 cut(s)	1002
AsuHPI	GGTGA	3 cut(s)	70, 200, 1040
BaeGI	GKGCMC	1 cut(s)	1115
BalI	TGGCCA	1 cut(s)	822
BanII	GRGCYC	2 cut(s)	394, 489
Bbv12I	GWGCWC	1 cut(s)	1115
BccI	CCATC	4 cut(s)	134, 464, 812, 1177
BciT130I	CCWGG	1 cut(s)	1023
BclI	TGATCA	3 cut(s)	238, 346, 1165
BcoDI	GTCTC	1 cut(s)	961
BfaI	CTAG	1 cut(s)	599
BglII	AGATCT	1 cut(s)	157
BisI	GCNGC	3 cut(s)	555, 704, 771
BlsI	GCNGC	3 cut(s)	556, 705, 772
Bme1390I	CCNGG	1 cut(s)	1023
BmgBI	CACGTC	1 cut(s)	626
BmiI	GGNNCC	1 cut(s)	1020
BmrFI	CCNGG	1 cut(s)	1023
BmsI	GCATC	3 cut(s)	184, 220, 286
BpuEI	CTTGAG	1 cut(s)	1144
BsaBI	GATNNNNATC	2 cut(s)	585, 606
BsaJI	CCNNGG	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	710, 740
Bsc4I	CCNNNNNNNGG	3 cut(s)	440, 786, 1183
Bse8I	GATNNNNATC	2 cut(s)	585, 606
BseBI	CCWGG	1 cut(s)	1023
BseDI	CCNNGG	1 cut(s)	149
BseGI	GGATG	3 cut(s)	126, 199, 714
BseJI	GATNNNNATC	2 cut(s)	585, 606
BseLI	CCNNNNNNNGG	3 cut(s)	440, 786, 1183
BseMII	CTCAG	3 cut(s)	91, 263, 625
BseSI	GKGCMC	1 cut(s)	1115
BshFI	GGCC	1 cut(s)	822
BsiHKAI	GWGCWC	1 cut(s)	1115
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	440, 786, 1183
BsmAI	GTCTC	1 cut(s)	961
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	1 cut(s)	822
Bsp1286I	GDGCHC	3 cut(s)	394, 489, 1115
Bsp1407I	TGTACA	2 cut(s)	492, 783
Bsp143I	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
BspACI	CCGC	4 cut(s)	554, 703, 706, 771
BspANI	GGCC	1 cut(s)	822
BspCNI	CTCAG	3 cut(s)	90, 262, 624
BspLI	GGNNCC	1 cut(s)	1020
BspPI	GGATC	2 cut(s)	615, 1050
BspQI	GCTCTTC	1 cut(s)	399
BsrGI	TGTACA	2 cut(s)	492, 783
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	1 cut(s)	1023
Bst4CI	ACNGT	2 cut(s)	227, 344
Bst6I	CTCTTC	4 cut(s)	399, 629, 807, 942
BstAUI	TGTACA	2 cut(s)	492, 783
BstC8I	GCNNGC	4 cut(s)	768, 1060, 1111, 1156
BstDEI	CTNAG	5 cut(s)	77, 161, 249, 572, 611
BstF5I	GGATG	3 cut(s)	126, 199, 714
BstKTI	GATC	9 cut(s)	41, 160, 241, 349, 583, 610, 873, 1045, 1168
BstMAI	GTCTC	1 cut(s)	961
BstMBI	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
BstNI	CCWGG	1 cut(s)	1023
BstNSI	RCATGY	1 cut(s)	1062
BstSCI	CCNGG	1 cut(s)	1021
BstSLI	GKGCMC	1 cut(s)	1115
BstX2I	RGATCY	2 cut(s)	157, 607
BstXI	CCANNNNNNTGG	2 cut(s)	55, 387
BstYI	RGATCY	2 cut(s)	157, 607
BsuRI	GGCC	1 cut(s)	822
BtrI	CACGTC	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	126, 199, 714
BtsIMutI	CAGTG	1 cut(s)	349
Cac8I	GCNNGC	4 cut(s)	768, 1060, 1111, 1156
CsiI	ACCWGGT	1 cut(s)	1021
Csp6I	GTAC	3 cut(s)	476, 493, 784
CviAII	CATG	7 cut(s)	211, 479, 490, 496, 594, 781, 1059
CviQI	GTAC	3 cut(s)	476, 493, 784
DdeI	CTNAG	5 cut(s)	77, 161, 249, 572, 611
DpnI	GATC	9 cut(s)	40, 159, 240, 348, 582, 609, 872, 1044, 1167
DpnII	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
EaeI	YGGCCR	1 cut(s)	820
Eam1104I	CTCTTC	4 cut(s)	399, 629, 807, 942
EarI	CTCTTC	4 cut(s)	399, 629, 807, 942
EciI	GGCGGA	1 cut(s)	721
Eco130I	CCWWGG	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	394, 489
Eco32I	GATATC	1 cut(s)	739
EcoRI	GAATTC	2 cut(s)	116, 217
EcoRII	CCWGG	1 cut(s)	1021
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	1 cut(s)	149
EcoT22I	ATGCAT	1 cut(s)	1064
EcoT38I	GRGCYC	2 cut(s)	394, 489
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	7 cut(s)	214, 482, 493, 499, 597, 784, 1062
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	7 cut(s)	210, 478, 489, 495, 593, 780, 1058
FbaI	TGATCA	3 cut(s)	238, 346, 1165
Fnu4HI	GCNGC	3 cut(s)	555, 704, 771
FokI	GGATG	3 cut(s)	113, 206, 721
FriOI	GRGCYC	2 cut(s)	394, 489
Fsp4HI	GCNGC	3 cut(s)	555, 704, 771
FspBI	CTAG	1 cut(s)	599
GluI	GCNGC	3 cut(s)	555, 704, 771
HaeIII	GGCC	1 cut(s)	822
Hin1II	CATG	7 cut(s)	214, 482, 493, 499, 597, 784, 1062
HphI	GGTGA	3 cut(s)	70, 200, 1040
Hpy166II	GTNNAC	2 cut(s)	979, 1113
Hpy188I	TCNGA	8 cut(s)	252, 405, 465, 548, 614, 667, 877, 1132
Hpy188III	TCNNGA	3 cut(s)	182, 732, 815
Hpy8I	GTNNAC	2 cut(s)	979, 1113
Hpy99I	CGWCG	1 cut(s)	1183
HpyAV	CCTTC	5 cut(s)	179, 247, 476, 753, 1041
HpyCH4III	ACNGT	2 cut(s)	227, 344
HpyCH4IV	ACGT	2 cut(s)	625, 981
HpyCH4V	TGCA	7 cut(s)	4, 422, 428, 674, 974, 1062, 1113
HpyF3I	CTNAG	5 cut(s)	77, 161, 249, 572, 611
HpySE526I	ACGT	2 cut(s)	625, 981
Hsp92II	CATG	7 cut(s)	214, 482, 493, 499, 597, 784, 1062
Ksp22I	TGATCA	3 cut(s)	238, 346, 1165
Kzo9I	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
LguI	GCTCTTC	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	763
LweI	GCATC	3 cut(s)	184, 220, 286
MabI	ACCWGGT	1 cut(s)	1021
MaeI	CTAG	1 cut(s)	599
MaeII	ACGT	2 cut(s)	625, 981
MaeIII	GTNAC	2 cut(s)	621, 1136
MalI	GATC	9 cut(s)	40, 159, 240, 348, 582, 609, 872, 1044, 1167
MboI	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
MfeI	CAATTG	1 cut(s)	942
MflI	RGATCY	2 cut(s)	157, 607
MhlI	GDGCHC	3 cut(s)	394, 489, 1115
MlsI	TGGCCA	1 cut(s)	822
MluNI	TGGCCA	1 cut(s)	822
MlyI	GAGTC	4 cut(s)	70, 116, 241, 646
MmeI	TCCRAC	3 cut(s)	93, 246, 273
MnlI	CCTC	8 cut(s)	184, 319, 367, 387, 502, 553, 945, 949
Mox20I	TGGCCA	1 cut(s)	822
Mph1103I	ATGCAT	1 cut(s)	1064
MroXI	GAANNNNTTC	1 cut(s)	1002
MscI	TGGCCA	1 cut(s)	822
MseI	TTAA	3 cut(s)	285, 759, 933
MslI	CAYNNNNRTG	2 cut(s)	131, 494
Msp20I	TGGCCA	1 cut(s)	822
MspA1I	CMGCKG	1 cut(s)	517
MspR9I	CCNGG	1 cut(s)	1023
MunI	CAATTG	1 cut(s)	942
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	1023
NdeII	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
NlaIII	CATG	7 cut(s)	214, 482, 493, 499, 597, 784, 1062
NlaIV	GGNNCC	1 cut(s)	1020
NmuCI	GTSAC	2 cut(s)	621, 1136
NsiI	ATGCAT	1 cut(s)	1064
NspI	RCATGY	1 cut(s)	1062
PaeI	GCATGC	1 cut(s)	1062
PciSI	GCTCTTC	1 cut(s)	399
PctI	GAATGC	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	1002
PfeI	GAWTC	6 cut(s)	66, 318, 833, 854, 1003, 1145
PkrI	GCNGC	3 cut(s)	556, 705, 772
PleI	GAGTC	4 cut(s)	69, 116, 241, 645
PpsI	GAGTC	4 cut(s)	69, 116, 241, 645
Psp6I	CCWGG	1 cut(s)	1021
PspGI	CCWGG	1 cut(s)	1021
PspN4I	GGNNCC	1 cut(s)	1020
PsuI	RGATCY	2 cut(s)	157, 607
PvuII	CAGCTG	1 cut(s)	517
RsaI	GTAC	3 cut(s)	477, 494, 785
RsaNI	GTAC	3 cut(s)	476, 493, 784
RseI	CAYNNNNRTG	2 cut(s)	131, 494
SapI	GCTCTTC	1 cut(s)	399
SaqAI	TTAA	3 cut(s)	285, 759, 933
SatI	GCNGC	3 cut(s)	555, 704, 771
Sau3AI	GATC	9 cut(s)	38, 157, 238, 346, 580, 607, 870, 1042, 1165
SchI	GAGTC	4 cut(s)	70, 116, 241, 646
ScrFI	CCNGG	1 cut(s)	1023
SduI	GDGCHC	3 cut(s)	394, 489, 1115
SexAI	ACCWGGT	1 cut(s)	1021
SfaNI	GCATC	3 cut(s)	184, 220, 286
SmiMI	CAYNNNNRTG	2 cut(s)	131, 494
SmlI	CTYRAG	1 cut(s)	1159
SmoI	CTYRAG	1 cut(s)	1159
SphI	GCATGC	1 cut(s)	1062
SsiI	CCGC	4 cut(s)	554, 703, 706, 771
SspMI	CTAG	1 cut(s)	599
StyD4I	CCNGG	1 cut(s)	1021
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	2 cut(s)	227, 344
TaiI	ACGT	2 cut(s)	628, 984
TaqI	TCGA	5 cut(s)	37, 64, 120, 456, 731
TatI	WGTACW	2 cut(s)	492, 783
TauI	GCSGC	3 cut(s)	557, 706, 773
TfiI	GAWTC	6 cut(s)	66, 318, 833, 854, 1003, 1145
Tru1I	TTAA	3 cut(s)	285, 759, 933
Tru9I	TTAA	3 cut(s)	285, 759, 933
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	2 cut(s)	621, 1136
Tsp45I	GTSAC	2 cut(s)	621, 1136
TspDTI	ATGAA	7 cut(s)	194, 230, 275, 495, 512, 846, 867
TspGWI	ACGGA	1 cut(s)	1099
TspRI	CASTG	1 cut(s)	349
VneI	GTGCAC	1 cut(s)	1111
XapI	RAATTY	5 cut(s)	116, 217, 901, 1036, 1099
XceI	RCATGY	1 cut(s)	1062
XmnI	GAANNNNTTC	1 cut(s)	1002
XspI	CTAG	1 cut(s)	599
Zsp2I	ATGCAT	1 cut(s)	1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.