Rmu_sc0007263.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007263.1
OG0007040
Physical Location & Seq
Reverse (-)
9453 .. 10043
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007263.1_g000004.1.cds

Sequence Viewer

Length: 591 bp
ctgcgagtcgatctctatcacacatggctagatgtggatctcaaaaaactctcactaggaaagagccccagggaagtacttaaagaacttgctgaaactgcaaagtccatatttgaagaatctaaaaggaagcgtagagttaagtctgggtgtgtaatggatacgagtccttcaaaatggtctgttaaggaattggcagctaattccatgcataggataagtcagactcttctgcttaaccagacatgcgacgatagactatttgaagcactggtggtgatgatctccgacattgttggtgcttgtctcactaatacacagaatgttatggcgatgaagtgtttcaacagcaaaattgaagagagggaagaagccgtgaggcacgcagttcacgttgttggtaagactgagagaattcttgagattgttaacaagggaattcctcctgacttggatactcaccaaatgggatgcattgatgaatggcgtttgtcacacaaacggaagatgatcccctcggccttctcttcatatccatcagactcagagtgtgacggattgcctcttctggttcaagtgattcctccctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

22.19

Weight (kDa)

7.78

Isoelectric Point (pI)

47.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 45, 505
AcsI RAATTY 2 cut(s) 414, 438
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 6 cut(s) 116, 174, 266, 346, 359, 575
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 1 cut(s) 311
AlwI GGATC 2 cut(s) 45, 505
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 1 cut(s) 197
ApoI RAATTY 2 cut(s) 414, 438
Asp700I GAANNNNTTC 1 cut(s) 341
AsuHPI GGTGA 2 cut(s) 289, 452
BanII GRGCYC 1 cut(s) 68
BbvI GCAGC 1 cut(s) 209
BccI CCATC 1 cut(s) 544
BceAI ACGGC 1 cut(s) 359
BciT130I CCWGG 1 cut(s) 70
BciVI GTATCC 2 cut(s) 154, 448
BcoDI GTCTC 1 cut(s) 311
BfaI CTAG 2 cut(s) 29, 56
BfuI GTATCC 2 cut(s) 154, 448
BisI GCNGC 1 cut(s) 198
BlsI GCNGC 1 cut(s) 199
BmcAI AGTACT 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 70
BmrFI CCNGG 1 cut(s) 70
BmsI GCATC 1 cut(s) 461
BplI GAGNNNNNCTC 1 cut(s) 29
BpuEI CTTGAG 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 15, 36
BsaJI CCNNGG 3 cut(s) 68, 69, 516
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 276
Bse8I GATNNNNATC 2 cut(s) 15, 36
BseBI CCWGG 1 cut(s) 70
BseDI CCNNGG 3 cut(s) 68, 69, 516
BseGI GGATG 1 cut(s) 476
BseJI GATNNNNATC 2 cut(s) 15, 36
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMII CTCAG 2 cut(s) 399, 558
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 209
BshFI GGCC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 1 cut(s) 521
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 4 cut(s) 10, 37, 282, 510
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 2 cut(s) 400, 557
BspPI GGATC 2 cut(s) 45, 505
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 3 cut(s) 68, 69, 516
BssMI GATC 4 cut(s) 10, 37, 282, 510
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 4 cut(s) 234, 354, 532, 570
BstC8I GCNNGC 1 cut(s) 384
BstDEI CTNAG 2 cut(s) 408, 544
BstF5I GGATG 1 cut(s) 476
BstKTI GATC 4 cut(s) 13, 40, 285, 513
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 10, 37, 282, 510
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstNI CCWGG 1 cut(s) 70
BstNSI RCATGY 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BsuI GTATCC 2 cut(s) 154, 448
BsuRI GGCC 1 cut(s) 521
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 476
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 24, 208, 246
CviJI RGCY 5 cut(s) 28, 66, 200, 374, 521
CviKI_1 RGCY 5 cut(s) 28, 66, 200, 374, 521
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 2 cut(s) 408, 544
DpnI GATC 4 cut(s) 12, 39, 284, 512
DpnII GATC 4 cut(s) 10, 37, 282, 510
Eam1104I CTCTTC 4 cut(s) 234, 354, 532, 570
EarI CTCTTC 4 cut(s) 234, 354, 532, 570
Eco24I GRGCYC 1 cut(s) 68
EcoRI GAATTC 2 cut(s) 414, 438
EcoRII CCWGG 1 cut(s) 68
EcoT22I ATGCAT 2 cut(s) 213, 476
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 3 cut(s) 27, 211, 249
FaiI YATR 7 cut(s) 25, 110, 209, 213, 247, 329, 532
FatI CATG 3 cut(s) 23, 207, 245
Fnu4HI GCNGC 1 cut(s) 198
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 198
FspBI CTAG 2 cut(s) 29, 56
GluI GCNGC 1 cut(s) 198
HaeIII GGCC 1 cut(s) 521
Hin1II CATG 3 cut(s) 27, 211, 249
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 6 cut(s) 6, 119, 166, 226, 542, 580
HpaI GTTAAC 1 cut(s) 430
HphI GGTGA 2 cut(s) 289, 452
Hpy166II GTNNAC 2 cut(s) 391, 430
Hpy188I TCNGA 4 cut(s) 225, 289, 541, 547
Hpy188III TCNNGA 2 cut(s) 419, 446
Hpy8I GTNNAC 2 cut(s) 391, 430
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 2 cut(s) 180, 532
HpyCH4IV ACGT 1 cut(s) 393
HpyCH4V TGCA 3 cut(s) 101, 211, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 408, 544
HpySE526I ACGT 1 cut(s) 393
Hsp92II CATG 3 cut(s) 27, 211, 249
KspAI GTTAAC 1 cut(s) 430
Kzo9I GATC 4 cut(s) 10, 37, 282, 510
LpnPI CCDG 7 cut(s) 55, 82, 132, 254, 257, 459, 554
Lsp1109I GCAGC 1 cut(s) 209
LweI GCATC 1 cut(s) 461
MaeI CTAG 2 cut(s) 29, 56
MaeII ACGT 1 cut(s) 393
MaeIII GTNAC 2 cut(s) 492, 551
MalI GATC 4 cut(s) 12, 39, 284, 512
MboI GATC 4 cut(s) 10, 37, 282, 510
MboII GAAGA 7 cut(s) 128, 221, 371, 380, 517, 519, 557
MflI RGATCY 1 cut(s) 37
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 5 cut(s) 191, 202, 354, 414, 438
MlyI GAGTC 4 cut(s) 15, 175, 220, 536
MmeI TCCRAC 1 cut(s) 312
MnlI CCTC 5 cut(s) 357, 372, 453, 526, 573
Mph1103I ATGCAT 2 cut(s) 213, 476
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 5 cut(s) 81, 141, 186, 237, 429
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 98
NdeII GATC 4 cut(s) 10, 37, 282, 510
NlaIII CATG 3 cut(s) 27, 211, 249
NmeAIII GCCGAG 1 cut(s) 497
NmuCI GTSAC 2 cut(s) 492, 551
NsiI ATGCAT 2 cut(s) 213, 476
NspI RCATGY 1 cut(s) 249
PasI CCCWGGG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 390
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 119, 580
PkrI GCNGC 1 cut(s) 199
PleI GAGTC 4 cut(s) 14, 174, 220, 536
PpsI GAGTC 4 cut(s) 14, 174, 220, 536
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 5 cut(s) 81, 141, 186, 237, 429
SatI GCNGC 1 cut(s) 198
Sau3AI GATC 4 cut(s) 10, 37, 282, 510
ScaI AGTACT 1 cut(s) 78
SchI GAGTC 4 cut(s) 15, 175, 220, 536
ScrFI CCNGG 1 cut(s) 70
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 202, 396
SfaNI GCATC 1 cut(s) 461
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 5 cut(s) 191, 202, 354, 414, 438
SspMI CTAG 2 cut(s) 29, 56
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 9
TasI AATT 5 cut(s) 191, 202, 354, 414, 438
TatI WGTACW 1 cut(s) 76
TfiI GAWTC 2 cut(s) 119, 580
Tru1I TTAA 5 cut(s) 81, 141, 186, 237, 429
Tru9I TTAA 5 cut(s) 81, 141, 186, 237, 429
TscAI CASTG 1 cut(s) 276
TseFI GTSAC 2 cut(s) 492, 551
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 492, 551
TspDTI ATGAA 3 cut(s) 350, 495, 519
TspGWI ACGGA 2 cut(s) 517, 570
TspRI CASTG 1 cut(s) 276
XapI RAATTY 2 cut(s) 414, 438
XceI RCATGY 1 cut(s) 249
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 29, 56
ZrmI AGTACT 1 cut(s) 78
Zsp2I ATGCAT 2 cut(s) 213, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.