Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Forward (+)

19998404 .. 19999294

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g26871.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCTACTGAATATTGGCTTCAAAAGGGAAGGAAAGAAGAGCCCCAATATCTCCTCAAACTCTTGCAGAAATCCACATTCTCGCAAAGGTTCAAAGGAGTAGCTGAATTTGACAGTGACCAAGTTCCCTCCTTGGACTCTGAAGAACCCCCAAACTGTTGGGCACTTCCTGTTGTGACATTAACAAGTATTGCTCTTGCACTCTCAAGTAACAGCACTTGCTCGATCGAAATGTTGGTAGATGGCTTAAACCAAGGGCTAATGTACATAAATGCCATTGAAGATCACTTGGATCATAAAAGTGACTTTAAAAACACCAGGAAGGCAGCAAACATTGTGTGGCTGCAAGTCGATCTCTATCACACATGGCTAGATGTGGATCTCAAAAACCTGTCACTGCTTGGAAAGAATCCCAGAGAAGTACTTAAAGATCTTGCTGAAACTGCAAAGTCCAGATTTGAAGAATCTAAAAGGAAGCGTAGAGATAAGTTTGGGTGTGTAATGGATGTGAGTCCTTCAAAATGGTCTGTTATGGAATTGGCTGCTTCCTCCATGAATAGGATAAGTCAGACTCTTCTGCTTAACCAGACATGCGACGATAGATTGTTTGAAGCACTGGTGGTGATGATCTCTGACATTTTTGGTGCTTGTCTCACTAATTCACAGAGAGTTATAGCAATGAAGTGTTTCAACAGCAAAATTGAAGAGAGGGAAGCAACTGTGAGGCACGCAGTTCACACTCTTGGTAAGACTGAGAGGATTCCTGAGATTGTTAACAAGGGAATTCCTCCAGACTTGGATCCTCAACAACTGGGATGCATTGATGAATGGCGTTTGTCACACAAACGGAAGATGATCCCCTCGGCCTTCTGTTTGTCATCAGACTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

297

Amino Acids

33.62

Weight (kDa)

6.33

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	5 cut(s)	300, 387, 794, 807, 850
AcsI	RAATTY	2 cut(s)	107, 783
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	2 cut(s)	266, 423
AfiI	CCNNNNNNNGG	1 cut(s)	558
AgsI	TTSAA	8 cut(s)	23, 94, 281, 461, 519, 611, 691, 704
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	5 cut(s)	300, 387, 794, 807, 850
AoxI	GGCC	1 cut(s)	864
ApeKI	GCWGC	3 cut(s)	326, 343, 542
ApoI	RAATTY	2 cut(s)	107, 783
Asp700I	GAANNNNTTC	1 cut(s)	686
AsuHPI	GGTGA	1 cut(s)	634
BaeGI	GKGCMC	1 cut(s)	166
BamHI	GGATCC	1 cut(s)	799
BanII	GRGCYC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	330, 338, 529
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	371
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	327, 344, 543
BlsI	GCNGC	3 cut(s)	328, 345, 544
BmcAI	AGTACT	1 cut(s)	423
Bme1390I	CCNGG	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	801
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	821
BmsI	GCATC	1 cut(s)	806
BmuI	ACTGGG	1 cut(s)	821
BpmI	CTGGAG	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	190
BsaBI	GATNNNNATC	2 cut(s)	357, 378
BsaJI	CCNNGG	3 cut(s)	132, 253, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	558
Bse1I	ACTGG	2 cut(s)	621, 816
Bse3DI	GCAATG	1 cut(s)	684
Bse8I	GATNNNNATC	2 cut(s)	357, 378
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	3 cut(s)	132, 253, 861
BseGI	GGATG	2 cut(s)	511, 821
BseJI	GATNNNNATC	2 cut(s)	357, 378
BseLI	CCNNNNNNNGG	1 cut(s)	558
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	2 cut(s)	744, 756
BseNI	ACTGG	2 cut(s)	621, 816
BseRI	GAGGAG	1 cut(s)	44
BseSI	GKGCMC	1 cut(s)	166
BseXI	GCAGC	3 cut(s)	330, 338, 529
Bsh1285I	CGRYCG	1 cut(s)	228
BshFI	GGCC	1 cut(s)	866
BsiEI	CGRYCG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	558
BsmAI	GTCTC	1 cut(s)	656
BsnI	GGCC	1 cut(s)	866
Bsp1286I	GDGCHC	2 cut(s)	45, 166
Bsp1407I	TGTACA	1 cut(s)	264
Bsp143I	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	2 cut(s)	745, 757
BspLI	GGNNCC	1 cut(s)	801
BspPI	GGATC	5 cut(s)	300, 387, 794, 807, 850
BspQI	GCTCTTC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	684
BsrGI	TGTACA	1 cut(s)	264
BsrI	ACTGG	2 cut(s)	621, 816
BssECI	CCNNGG	3 cut(s)	132, 253, 861
BssMI	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
BssT1I	CCWWGG	2 cut(s)	132, 253
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	3 cut(s)	116, 158, 721
Bst6I	CTCTTC	3 cut(s)	33, 579, 699
BstAUI	TGTACA	1 cut(s)	264
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	2 cut(s)	753, 765
BstF5I	GGATG	2 cut(s)	511, 821
BstKTI	GATC	9 cut(s)	228, 286, 295, 355, 382, 433, 630, 802, 858
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
BstMCI	CGRYCG	1 cut(s)	228
BstMWI	GCNNNNNNNGC	1 cut(s)	443
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	1 cut(s)	594
BstSCI	CCNGG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	166
BstV1I	GCAGC	3 cut(s)	330, 338, 529
BstX2I	RGATCY	3 cut(s)	379, 430, 799
BstXI	CCANNNNNNTGG	1 cut(s)	159
BstYI	RGATCY	3 cut(s)	379, 430, 799
BsuRI	GGCC	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	511, 821
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	121, 395, 614
Cac8I	GCNNGC	1 cut(s)	729
Csp6I	GTAC	2 cut(s)	265, 422
CviAII	CATG	3 cut(s)	366, 553, 591
CviQI	GTAC	2 cut(s)	265, 422
DdeI	CTNAG	2 cut(s)	753, 765
DpnI	GATC	9 cut(s)	227, 285, 294, 354, 381, 432, 629, 801, 857
DpnII	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
DraI	TTTAAA	1 cut(s)	310
Eam1104I	CTCTTC	3 cut(s)	33, 579, 699
EarI	CTCTTC	3 cut(s)	33, 579, 699
Eco130I	CCWWGG	2 cut(s)	132, 253
Eco24I	GRGCYC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	162
EcoRI	GAATTC	1 cut(s)	783
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	132, 253
EcoT22I	ATGCAT	1 cut(s)	821
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	132, 253
FaeI	CATG	3 cut(s)	369, 556, 594
FaiI	YATR	8 cut(s)	269, 297, 367, 533, 554, 592, 674, 889
FatI	CATG	3 cut(s)	365, 552, 590
Fnu4HI	GCNGC	3 cut(s)	327, 344, 543
FokI	GGATG	2 cut(s)	518, 828
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	327, 344, 543
FspBI	CTAG	1 cut(s)	371
GluI	GCNGC	3 cut(s)	327, 344, 543
GsuI	CTGGAG	1 cut(s)	774
HaeIII	GGCC	1 cut(s)	866
Hin1II	CATG	3 cut(s)	369, 556, 594
HincII	GTYRAC	1 cut(s)	775
HindII	GTYRAC	1 cut(s)	775
HinfI	GANTC	7 cut(s)	137, 409, 464, 511, 571, 760, 884
HpaI	GTTAAC	1 cut(s)	775
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	2 cut(s)	736, 775
Hpy188I	TCNGA	4 cut(s)	142, 570, 634, 883
Hpy188III	TCNNGA	3 cut(s)	453, 764, 791
Hpy8I	GTNNAC	2 cut(s)	736, 775
Hpy99I	CGWCG	1 cut(s)	599
HpyAV	CCTTC	4 cut(s)	24, 316, 525, 877
HpyCH4III	ACNGT	3 cut(s)	116, 158, 721
HpyCH4V	TGCA	5 cut(s)	67, 200, 346, 446, 819
HpyF10VI	GCNNNNNNNGC	1 cut(s)	443
HpyF3I	CTNAG	2 cut(s)	753, 765
Hsp92II	CATG	3 cut(s)	369, 556, 594
KspAI	GTTAAC	1 cut(s)	775
Kzo9I	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
LguI	GCTCTTC	1 cut(s)	33
Lsp1109I	GCAGC	3 cut(s)	330, 338, 529
LweI	GCATC	1 cut(s)	806
MaeI	CTAG	1 cut(s)	371
MaeIII	GTNAC	6 cut(s)	116, 175, 209, 302, 393, 837
MalI	GATC	9 cut(s)	227, 285, 294, 354, 381, 432, 629, 801, 857
MboI	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
MboII	GAAGA	7 cut(s)	50, 155, 293, 473, 566, 716, 862
MflI	RGATCY	3 cut(s)	379, 430, 799
MhlI	GDGCHC	2 cut(s)	45, 166
MluCI	AATT	5 cut(s)	107, 536, 658, 699, 783
MlyI	GAGTC	4 cut(s)	131, 520, 565, 878
MnlI	CCTC	9 cut(s)	65, 139, 559, 702, 717, 750, 798, 813, 871
Mph1103I	ATGCAT	1 cut(s)	821
MroXI	GAANNNNTTC	1 cut(s)	686
MseI	TTAA	6 cut(s)	182, 248, 309, 426, 582, 774
MslI	CAYNNNNRTG	1 cut(s)	300
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	443
NdeII	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
NlaIII	CATG	3 cut(s)	369, 556, 594
NlaIV	GGNNCC	1 cut(s)	801
NmeAIII	GCCGAG	1 cut(s)	842
NmuCI	GTSAC	5 cut(s)	116, 175, 302, 393, 837
NsiI	ATGCAT	1 cut(s)	821
NspI	RCATGY	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	33
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	409, 464, 760
PkrI	GCNGC	3 cut(s)	328, 345, 544
Ple19I	CGATCG	1 cut(s)	228
PleI	GAGTC	4 cut(s)	131, 519, 565, 878
PpsI	GAGTC	4 cut(s)	131, 519, 565, 878
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	1 cut(s)	801
PsuI	RGATCY	3 cut(s)	379, 430, 799
PvuI	CGATCG	1 cut(s)	228
RsaI	GTAC	2 cut(s)	266, 423
RsaNI	GTAC	2 cut(s)	265, 422
RseI	CAYNNNNRTG	1 cut(s)	300
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	6 cut(s)	182, 248, 309, 426, 582, 774
SatI	GCNGC	3 cut(s)	327, 344, 543
Sau3AI	GATC	9 cut(s)	225, 283, 292, 352, 379, 430, 627, 799, 855
ScaI	AGTACT	1 cut(s)	423
SchI	GAGTC	4 cut(s)	131, 520, 565, 878
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	45, 166
SetI	ASST	3 cut(s)	92, 106, 393
SfaNI	GCATC	1 cut(s)	806
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	5 cut(s)	107, 536, 658, 699, 783
SspI	AATATT	1 cut(s)	14
SspMI	CTAG	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	2 cut(s)	132, 253
TaaI	ACNGT	3 cut(s)	116, 158, 721
TaqI	TCGA	3 cut(s)	224, 228, 351
TasI	AATT	5 cut(s)	107, 536, 658, 699, 783
TatI	WGTACW	2 cut(s)	264, 421
TfiI	GAWTC	3 cut(s)	409, 464, 760
Tru1I	TTAA	6 cut(s)	182, 248, 309, 426, 582, 774
Tru9I	TTAA	6 cut(s)	182, 248, 309, 426, 582, 774
TscAI	CASTG	3 cut(s)	121, 402, 621
TseFI	GTSAC	5 cut(s)	116, 175, 302, 393, 837
TseI	GCWGC	3 cut(s)	326, 343, 542
Tsp45I	GTSAC	5 cut(s)	116, 175, 302, 393, 837
TspDTI	ATGAA	3 cut(s)	569, 695, 840
TspGWI	ACGGA	1 cut(s)	862
TspRI	CASTG	3 cut(s)	121, 402, 621
XapI	RAATTY	2 cut(s)	107, 783
XceI	RCATGY	1 cut(s)	594
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	1 cut(s)	371
ZrmI	AGTACT	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.