Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8016408.1

Orthogroup ID

OG0007040

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 434

Gene Structure 433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8016408.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 433 bp

atgatgagatccaattgtgatgcaactggatattggcttcaaaagggaaggaaagaagagcccaaatatctcctcaaactcttgcagagatccacattctcacaaagattcaaaggagtagctgaatttgacagtgaccaagttccctccttggattctgaagaacctcctaattgttgggctcttcctgttgtgacattaacaagtattgctcttgcactctccagtataaacacttgctcaatcgaaaagttggtagatggcgtaaaccaagggctgctgtacataaatgccattgaaaatcacttggatcataaaagtgacttagcaaacaccaggaaggcagcaaacattgtatggctgcgagtcgatctctatcacacatggctagatgtggatctcaaaaaactctcactaggaaagagccccaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.3

Weight (kDa)

7.71

Isoelectric Point (pI)

46.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02650
fragaria_vesca	FvH4_1g17520 FvH4_1g17520 FvH4_3g26860 FvH4_3g26871
malus_domestica	MD06G1060600.v1.1
prunus_persica	Prupe.5G071600_v2.0.a1
pyrus_communis	pycom06g05050
rosa_chinensis	RchiOBHm_Chr7g0202971
rosa_laevigata	RLG00000003560 RLG00000003562
rosa_multiflora	Rmu_co8016408.1_g000001 Rmu_co8369993.1_g000001 Rmu_sc0007263.1_g000004 Rmu_sc0008159.1_g000002 Rmu_sc0008159.1_g000004 Rmu_sc0013377.1_g000003
rosa_roxburghii	Rroxscaffold_3G00254130 Rroxscaffold_3G00254150
rosa_rugosa	Rorug07G0074000
rosa_samantha	Rh7AG202200 Rh7BG202300 Rh7CG213300 Rh7DG209300
rosa_wichuraiana	Rw7G017680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	3, 84, 318, 405
AcsI	RAATTY	1 cut(s)	125
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	3 cut(s)	41, 112, 299
AjnI	CCWGG	2 cut(s)	335, 428
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	4 cut(s)	3, 84, 318, 405
ApeKI	GCWGC	3 cut(s)	277, 344, 361
ApoI	RAATTY	1 cut(s)	125
BanII	GRGCYC	3 cut(s)	63, 184, 428
BbvI	GCAGC	3 cut(s)	264, 348, 356
BccI	CCATC	1 cut(s)	254
BciT130I	CCWGG	2 cut(s)	337, 430
BfaI	CTAG	2 cut(s)	389, 416
BisI	GCNGC	3 cut(s)	278, 345, 362
BlsI	GCNGC	3 cut(s)	279, 346, 363
Bme1390I	CCNGG	2 cut(s)	337, 430
BmrFI	CCNGG	2 cut(s)	337, 430
BmsI	GCATC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpmI	CTGGAG	1 cut(s)	208
BsaBI	GATNNNNATC	2 cut(s)	375, 396
BsaJI	CCNNGG	4 cut(s)	150, 271, 428, 429
Bse1I	ACTGG	2 cut(s)	31, 225
Bse8I	GATNNNNATC	2 cut(s)	375, 396
BseBI	CCWGG	2 cut(s)	337, 430
BseDI	CCNNGG	4 cut(s)	150, 271, 428, 429
BseJI	GATNNNNATC	2 cut(s)	375, 396
BseNI	ACTGG	2 cut(s)	31, 225
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	264, 348, 356
Bsp1286I	GDGCHC	3 cut(s)	63, 184, 428
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	5 cut(s)	8, 89, 310, 370, 397
BspPI	GGATC	4 cut(s)	3, 84, 318, 405
BspQI	GCTCTTC	2 cut(s)	51, 189
BsrGI	TGTACA	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	31, 225
BssECI	CCNNGG	4 cut(s)	150, 271, 428, 429
BssMI	GATC	5 cut(s)	8, 89, 310, 370, 397
BssT1I	CCWWGG	2 cut(s)	150, 271
Bst2UI	CCWGG	2 cut(s)	337, 430
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	2 cut(s)	51, 189
BstAUI	TGTACA	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	325
BstKTI	GATC	5 cut(s)	11, 92, 313, 373, 400
BstMBI	GATC	5 cut(s)	8, 89, 310, 370, 397
BstNI	CCWGG	2 cut(s)	337, 430
BstSCI	CCNGG	2 cut(s)	335, 428
BstV1I	GCAGC	3 cut(s)	264, 348, 356
BstX2I	RGATCY	3 cut(s)	8, 89, 397
BstYI	RGATCY	3 cut(s)	8, 89, 397
BtsIMutI	CAGTG	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	384
CviJI	RGCY	8 cut(s)	37, 61, 122, 182, 277, 361, 388, 426
CviKI_1	RGCY	8 cut(s)	37, 61, 122, 182, 277, 361, 388, 426
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	325
DpnI	GATC	5 cut(s)	10, 91, 312, 372, 399
DpnII	GATC	5 cut(s)	8, 89, 310, 370, 397
Eam1104I	CTCTTC	2 cut(s)	51, 189
EarI	CTCTTC	2 cut(s)	51, 189
Eco130I	CCWWGG	2 cut(s)	150, 271
Eco24I	GRGCYC	3 cut(s)	63, 184, 428
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	335, 428
EcoT14I	CCWWGG	2 cut(s)	150, 271
EcoT38I	GRGCYC	3 cut(s)	63, 184, 428
ErhI	CCWWGG	2 cut(s)	150, 271
FaeI	CATG	1 cut(s)	387
FaiI	YATR	5 cut(s)	230, 287, 315, 358, 385
FatI	CATG	1 cut(s)	383
Fnu4HI	GCNGC	3 cut(s)	278, 345, 362
FriOI	GRGCYC	3 cut(s)	63, 184, 428
Fsp4HI	GCNGC	3 cut(s)	278, 345, 362
FspBI	CTAG	2 cut(s)	389, 416
GluI	GCNGC	3 cut(s)	278, 345, 362
GsuI	CTGGAG	1 cut(s)	208
Hin1II	CATG	1 cut(s)	387
HinfI	GANTC	3 cut(s)	108, 155, 366
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	160
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	42, 334
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	23, 85, 218
HpyF3I	CTNAG	1 cut(s)	325
Hsp92II	CATG	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	8, 89, 310, 370, 397
LguI	GCTCTTC	2 cut(s)	51, 189
LpnPI	CCDG	6 cut(s)	12, 201, 238, 322, 349, 415
Lsp1109I	GCAGC	3 cut(s)	264, 348, 356
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	2 cut(s)	389, 416
MaeIII	GTNAC	3 cut(s)	134, 193, 320
MalI	GATC	5 cut(s)	10, 91, 312, 372, 399
MboI	GATC	5 cut(s)	8, 89, 310, 370, 397
MboII	GAAGA	3 cut(s)	68, 173, 176
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	3 cut(s)	8, 89, 397
MhlI	GDGCHC	3 cut(s)	63, 184, 428
MluCI	AATT	3 cut(s)	13, 125, 172
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	3 cut(s)	83, 157, 177
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	318
MspR9I	CCNGG	2 cut(s)	337, 430
MunI	CAATTG	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	337, 430
NdeII	GATC	5 cut(s)	8, 89, 310, 370, 397
NlaIII	CATG	1 cut(s)	387
NmuCI	GTSAC	3 cut(s)	134, 193, 320
PasI	CCCWGGG	1 cut(s)	429
PciSI	GCTCTTC	2 cut(s)	51, 189
PfeI	GAWTC	2 cut(s)	108, 155
PkrI	GCNGC	3 cut(s)	279, 346, 363
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Psp6I	CCWGG	2 cut(s)	335, 428
PspGI	CCWGG	2 cut(s)	335, 428
PsuI	RGATCY	3 cut(s)	8, 89, 397
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	318
SapI	GCTCTTC	2 cut(s)	51, 189
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	3 cut(s)	278, 345, 362
Sau3AI	GATC	5 cut(s)	8, 89, 310, 370, 397
SchI	GAGTC	1 cut(s)	375
ScrFI	CCNGG	2 cut(s)	337, 430
SduI	GDGCHC	3 cut(s)	63, 184, 428
SetI	ASST	2 cut(s)	124, 169
SfaNI	GCATC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	318
Sse9I	AATT	3 cut(s)	13, 125, 172
SspMI	CTAG	2 cut(s)	389, 416
StyD4I	CCNGG	2 cut(s)	335, 428
StyI	CCWWGG	2 cut(s)	150, 271
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	246, 369
TasI	AATT	3 cut(s)	13, 125, 172
TatI	WGTACW	1 cut(s)	282
TfiI	GAWTC	2 cut(s)	108, 155
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	3 cut(s)	134, 193, 320
TseI	GCWGC	3 cut(s)	277, 344, 361
Tsp45I	GTSAC	3 cut(s)	134, 193, 320
TspRI	CASTG	1 cut(s)	139
XapI	RAATTY	1 cut(s)	125
XspI	CTAG	2 cut(s)	389, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.